TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT002823.1| Arabidopsis thaliana clone RAFL14-87-E12 (R2... 103 2e-021
ref|NM_100088.3| Arabidopsis thaliana transcription regulat... 103 2e-021
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 79 6e-014
gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence 79 6e-014
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 79 6e-014
gb|AQ965283.1|AQ965283 LERIB35TF LERG Arabidopsis thaliana ... 37 0.22
gb|AQ965284.1|AQ965284 LERIB35TRB LERG Arabidopsis thaliana... 37 0.22
emb|AJ525029.1|ATH525029 Arabidopsis thaliana T-DNA flankin... 36 0.41
emb|AJ594843.1| Arabidopsis thaliana T-DNA flanking sequenc... 35 0.56
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 35 0.77
emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome ... 35 0.77
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 35 0.77
gb|BP560498.2|BP560498 BP560498 RAFL3 Arabidopsis thaliana ... 34 1.5
gb|AY050360.1| Arabidopsis thaliana AT5g25110/T11H3_120 mRN... 34 1.5
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 34 1.5
gb|AC005964.1| Arabidopsis thaliana chromosome V map 60.5 c... 34 1.5
ref|NM_122420.1| Arabidopsis thaliana CIPK25 (CBL-INTERACTI... 34 1.5
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 34 1.5
gb|BH173138.1|BH173138 SALK_000068 Arabidopsis thaliana TDN... 34 2.0
gb|CL478875.1|CL478875 SAIL_299_E05.v1 SAIL Collection Arab... 34 2.0
gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B... 34 2.0
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 34 2.0
gb|BZ287439.1|BZ287439 SALK_020812.47.70.x Arabidopsis thal... 33 2.7
gb|BP671953.1|BP671953 BP671953 RAFL21 Arabidopsis thaliana... 33 2.7
gb|BP844592.1|BP844592 BP844592 RAFL21 Arabidopsis thaliana... 33 3.8
gb|AC005936.3| Arabidopsis thaliana chromosome 2 clone F5O4... 30 5.6
gb|BH254929.1|BH254929 SALK_017424 Arabidopsis thaliana TDN... 32 7.1
gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis tha... 32 7.1
dbj|AP002067.2| Arabidopsis thaliana genomic DNA, chromosom... 31 9.8
dbj|AB005244.2| Arabidopsis thaliana genomic DNA, chromosom... 31 9.8
>gb|BT002823.1| Arabidopsis thaliana clone RAFL14-87-E12 (R20253) unknown protein
(At1g02080) mRNA, partial cds
Length = 2205
Score = 103 bits (219), Expect = 2e-021
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = +3 / +2
Query: 66 SYFSIDSYAKLVVMVLKYSSVEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFR 245
S+ ID YAKLV +LKY + + ++ +LS+I++ TVR IQKDAE+KK S N +PYFR
Sbjct: 701 SFLIIDMYAKLVFSILKYFPEQESSSRLFLLSEIMADTVRFIQKDAEDKKTSLNSKPYFR 880
Query: 246 LXINWLYDLTTTDGHHDGSNFQV 314
L INWL DL + D DG+NFQV
Sbjct: 881 LFINWLLDLCSLDPGTDGANFQV 949
Score = 45.1 bits (92), Expect = 7e-004
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = -3 / -1
Query: 313 T*KLEPS*WPXXXXXXXSQFIXNRKYGRGLNEAFFSSASF*MVLTVTEIILE 158
T*K PS SQ + NRKYG L++ F SSASF*+ LTV+ +I E
Sbjct: 948 T*KFAPSVPGSREHKSSSQLMNNRKYGLELSDVFLSSASF*INLTVSAMISE 793
Score = 38.2 bits (77), Expect = 0.083
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -2 / -3
Query: 314 NLKIRTIMMAISSSKVIEPIYXQSEVWSGIK*SFLFLSIFLNGPHSNRNNLGK 156
NLK+ TI I ++V P+ QSE+W I+* + LN H ++L K
Sbjct: 949 NLKVCTIRPRIQGTQVQ*PVDEQSEIWFRIE*CLFIFCVLLNKSHCVSHDL*K 791
>ref|NM_100088.3| Arabidopsis thaliana transcription regulator AT1G02080 mRNA, complete
cds
Length = 7275
Score = 103 bits (219), Expect = 2e-021
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = +3 / +1
Query: 66 SYFSIDSYAKLVVMVLKYSSVEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFR 245
S+ ID YAKLV +LKY + + ++ +LS+I++ TVR IQKDAE+KK S N +PYFR
Sbjct: 5788 SFLIIDMYAKLVFSILKYFPEQESSSRLFLLSEIMADTVRFIQKDAEDKKTSLNSKPYFR 5967
Query: 246 LXINWLYDLTTTDGHHDGSNFQV 314
L INWL DL + D DG+NFQV
Sbjct: 5968 LFINWLLDLCSLDPGTDGANFQV 6036
Score = 45.1 bits (92), Expect = 7e-004
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = -3 / -2
Query: 313 T*KLEPS*WPXXXXXXXSQFIXNRKYGRGLNEAFFSSASF*MVLTVTEIILE 158
T*K PS SQ + NRKYG L++ F SSASF*+ LTV+ +I E
Sbjct: 6035 T*KFAPSVPGSREHKSSSQLMNNRKYGLELSDVFLSSASF*INLTVSAMISE 5880
Score = 38.2 bits (77), Expect = 0.083
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -2 / -1
Query: 314 NLKIRTIMMAISSSKVIEPIYXQSEVWSGIK*SFLFLSIFLNGPHSNRNNLGK 156
NLK+ TI I ++V P+ QSE+W I+* + LN H ++L K
Sbjct: 6036 NLKVCTIRPRIQGTQVQ*PVDEQSEIWFRIE*CLFIFCVLLNKSHCVSHDL*K 5878
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 78.5 bits (165), Expect = 6e-014
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 156 LSKIISVTVRTIQKDAEEKKASFNPRPYFRLXINWLYDLTTTDGHHDGSNFQV 314
L +I++ TVR IQKDAE+KK S N +PYFRL INWL DL + D DG+NFQV
Sbjct: 384745 LFQIMADTVRFIQKDAEDKKTSLNSKPYFRLFINWLLDLCSLDPGTDGANFQV 384903
Score = 43.7 bits (89), Expect = 0.002
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = -3 / -2
Query: 313 T*KLEPS*WPXXXXXXXSQFIXNRKYGRGLNEAFFSSASF*MVLTVTEII 164
T*K PS SQ + NRKYG L++ F SSASF*+ LTV+ +I
Sbjct: 384902 T*KFAPSVPGSREHKSSSQLMNNRKYGLELSDVFLSSASF*INLTVSAMI 384753
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence
Length = 106973
Score = 78.5 bits (165), Expect = 6e-014
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +3 / +3
Query: 156 LSKIISVTVRTIQKDAEEKKASFNPRPYFRLXINWLYDLTTTDGHHDGSNFQV 314
L +I++ TVR IQKDAE+KK S N +PYFRL INWL DL + D DG+NFQV
Sbjct: 35073 LFQIMADTVRFIQKDAEDKKTSLNSKPYFRLFINWLLDLCSLDPGTDGANFQV 35231
Score = 43.7 bits (89), Expect = 0.002
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = -3 / -2
Query: 313 T*KLEPS*WPXXXXXXXSQFIXNRKYGRGLNEAFFSSASF*MVLTVTEII 164
T*K PS SQ + NRKYG L++ F SSASF*+ LTV+ +I
Sbjct: 35230 T*KFAPSVPGSREHKSSSQLMNNRKYGLELSDVFLSSASF*INLTVSAMI 35081
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 78.5 bits (165), Expect = 6e-014
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +3 / +1
Query: 156 LSKIISVTVRTIQKDAEEKKASFNPRPYFRLXINWLYDLTTTDGHHDGSNFQV 314
L +I++ TVR IQKDAE+KK S N +PYFRL INWL DL + D DG+NFQV
Sbjct: 384685 LFQIMADTVRFIQKDAEDKKTSLNSKPYFRLFINWLLDLCSLDPGTDGANFQV 384843
Score = 43.7 bits (89), Expect = 0.002
Identities = 24/50 (48%), Positives = 30/50 (60%)
Frame = -3 / -1
Query: 313 T*KLEPS*WPXXXXXXXSQFIXNRKYGRGLNEAFFSSASF*MVLTVTEII 164
T*K PS SQ + NRKYG L++ F SSASF*+ LTV+ +I
Sbjct: 384842 T*KFAPSVPGSREHKSSSQLMNNRKYGLELSDVFLSSASF*INLTVSAMI 384693
>gb|AQ965283.1|AQ965283 LERIB35TF LERG Arabidopsis thaliana genomic clone LERIB35, DNA
sequence
Length = 599
Score = 36.8 bits (74), Expect = 0.22
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +1 / +3
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL +HHS+PI+ IF +++M+S
Sbjct: 453 ASFLIKLNHLLHHHSSPIYLIFNILNMES 539
>gb|AQ965284.1|AQ965284 LERIB35TRB LERG Arabidopsis thaliana genomic clone LERIB35, DNA
sequence
Length = 607
Score = 36.8 bits (74), Expect = 0.22
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +1 / -3
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL +HHS+PI+ IF +++M+S
Sbjct: 230 ASFLIKLNHLLHHHSSPIYLIFNILNMES 144
>emb|AJ525029.1|ATH525029 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
087A04
Length = 642
Score = 35.9 bits (72), Expect = 0.41
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +1 / -3
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL +HHS+PI+ IF +++M S
Sbjct: 463 ASFLIKLNHLLHHHSSPIYLIFNILNMDS 377
>emb|AJ594843.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
406D11, genomic survey sequence
Length = 351
Score = 35.4 bits (71), Expect = 0.56
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1 / -1
Query: 34 HLSNHHSNPIFHIFPLIHM 90
HL N H NP FHIFP I+M
Sbjct: 345 HLFNGHKNPPFHIFPSINM 289
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 35.0 bits (70), Expect = 0.77
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3 / -3
Query: 126 VEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFRLXIN 257
VE T +KGS LS + S R + K K NP P F L N
Sbjct: 18882787 VETTSSKGSCLSGVTSRIFRNVTKTVTWPKKQINPWPNFCLFTN 18882656
Score = 31.3 bits (62), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1 / +1
Query: 25 LVDHLSNHHSNPIFHIFPLIHMQSSWL 105
L+ HL NHH+ + + +HMQ S++
Sbjct: 13318996 LIAHLVNHHAYKVISLLSPMHMQQSYM 13319076
>emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3
Length = 89469
Score = 35.0 bits (70), Expect = 0.77
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3 / -2
Query: 126 VEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFRLXIN 257
VE T +KGS LS + S R + K K NP P F L N
Sbjct: 67970 VETTSSKGSCLSGVTSRIFRNVTKTVTWPKKQINPWPNFCLFTN 67839
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 35.0 bits (70), Expect = 0.77
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3 / -1
Query: 126 VEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFRLXIN 257
VE T +KGS LS + S R + K K NP P F L N
Sbjct: 18930314 VETTSSKGSCLSGVTSRIFRNVTKTVTWPKKQINPWPNFCLFTN 18930183
Score = 31.3 bits (62), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1 / +1
Query: 25 LVDHLSNHHSNPIFHIFPLIHMQSSWL 105
L+ HL NHH+ + + +HMQ S++
Sbjct: 13433143 LIAHLVNHHAYKVISLLSPMHMQQSYM 13433223
>gb|BP560498.2|BP560498 BP560498 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-06-A15 5',
mRNA sequence
Length = 601
Score = 34.1 bits (68), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1 / +2
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL HHS+PI+ IF +++M S
Sbjct: 11 ASFLIKLNHLLLHHSSPIYLIFHILNMDS 97
>gb|AY050360.1| Arabidopsis thaliana AT5g25110/T11H3_120 mRNA, complete cds
Length = 1694
Score = 34.1 bits (68), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1 / +1
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL HHS+PI+ IF +++M S
Sbjct: 10 ASFLIKLNHLLLHHSSPIYLIFHILNMDS 96
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 34.1 bits (68), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1 / -1
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL HHS+PI+ IF +++M S
Sbjct: 8149684 ASFLIKLNHLLLHHSSPIYLIFHILNMDS 8149598
Score = 31.8 bits (63), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1 / +3
Query: 25 LVDHLSNHHSNPIFHIFPLIHMQSSWL 105
L+ HL NHH+ I + +HMQ S++
Sbjct: 12022503 LITHLVNHHAYMIISLLSPMHMQQSYM 12022583
Score = 31.3 bits (62), Expect = 9.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2 / -2
Query: 20 CSWWIISAITTATPYFIFFH*FICKARGYGSQVL 121
CSW + + YF FFH*+I + YG +VL
Sbjct: 7655010 CSW*YMYSCDQYIFYFYFFH*YINFLKNYG*KVL 7654909
>gb|AC005964.1| Arabidopsis thaliana chromosome V map 60.5 cM, complete sequence
Length = 91916
Score = 34.1 bits (68), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL HHS+PI+ IF +++M S
Sbjct: 63001 ASFLIKLNHLLLHHSSPIYLIFHILNMDS 62915
>ref|NM_122420.1| Arabidopsis thaliana CIPK25 (CBL-INTERACTING PROTEIN KINASE 25);
ATP binding / kinase/ protein kinase/ protein
serine/threonine kinase/ protein-tyro> AT5G25110
(CIPK25) mRNA, complete cds
Length = 1697
Score = 34.1 bits (68), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1 / +1
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL HHS+PI+ IF +++M S
Sbjct: 10 ASFLIKLNHLLLHHSSPIYLIFHILNMDS 96
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 34.1 bits (68), Expect = 1.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1 / -2
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQS 96
+ L+ ++HL HHS+PI+ IF +++M S
Sbjct: 8659316 ASFLIKLNHLLLHHSSPIYLIFHILNMDS 8659230
Score = 31.8 bits (63), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1 / -2
Query: 25 LVDHLSNHHSNPIFHIFPLIHMQSSWL 105
L+ HL NHH+ I + +HMQ S++
Sbjct: 12969980 LITHLVNHHAYMIISLLSPMHMQQSYM 12969900
Score = 31.3 bits (62), Expect = 9.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2 / -2
Query: 20 CSWWIISAITTATPYFIFFH*FICKARGYGSQVL 121
CSW + + YF FFH*+I + YG +VL
Sbjct: 8084642 CSW*YMYSCDQYIFYFYFFH*YINFLKNYG*KVL 8084541
>gb|BH173138.1|BH173138 SALK_000068 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_000068, DNA sequence
Length = 453
Score = 33.6 bits (67), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1 / -1
Query: 37 LSNHHSNPIFHIFPLIHMQSSWLWFSSTLQW 129
L N + IFH FP + + SWLW LQ+
Sbjct: 195 LLNRGGHLIFHSFPTLRLM*SWLWIYIFLQY 103
>gb|CL478875.1|CL478875 SAIL_299_E05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_299_E05.v1, DNA sequence
Length = 962
Score = 33.6 bits (67), Expect = 2.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1 / +3
Query: 7 PSKLLLLVDHLSNHHSNPIFHIFPLIHM 90
P LLL HL+ HH P F +FPLI++
Sbjct: 681 PPPHLLLPPHLAPHH*PPPFPLFPLIYL 764
>gb|AC006300.4| Arabidopsis thaliana chromosome 2 clone F13B15 map mi238, complete
sequence
Length = 88770
Score = 33.6 bits (67), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1 / -1
Query: 37 LSNHHSNPIFHIFPLIHMQSSWLWFSSTLQW 129
L N + IFH FP + + SWLW LQ+
Sbjct: 18852 LLNRGGHLIFHSFPTLRLM*SWLWIYIFLQY 18760
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 33.6 bits (67), Expect = 2.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1 / -2
Query: 37 LSNHHSNPIFHIFPLIHMQSSWLWFSSTLQW 129
L N + IFH FP + + SWLW LQ+
Sbjct: 10826714 LLNRGGHLIFHSFPTLRLM*SWLWIYIFLQY 10826622
>gb|BZ287439.1|BZ287439 SALK_020812.47.70.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_020812.47.70.x,
DNA sequence
Length = 205
Score = 33.1 bits (66), Expect = 2.7
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +3 / +3
Query: 126 VEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFRL 248
VE T +KGS LS + S R + K K NP P F L
Sbjct: 81 VETTSSKGSCLSGVTSRIFRNVTKTVTWPKKQINPWPNFCL 203
>gb|BP671953.1|BP671953 BP671953 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-42-G09 3',
mRNA sequence
Length = 421
Score = 33.1 bits (66), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1 / +1
Query: 31 DHLSNHHSNPIFHIFPLIHMQSSW 102
+HL HH P+F + P H+ S W
Sbjct: 199 NHLHGHHHKPLFELVPSPHLISMW 270
>gb|BP844592.1|BP844592 BP844592 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-90-O10 5',
mRNA sequence
Length = 411
Score = 32.7 bits (65), Expect = 3.8
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3 / -2
Query: 63 ISYFSIDSYAKLVVMVLKYSSVEITPNKGSILSKIISVTVRTIQK 197
+++FS S A L+ +V+ +SVE++P S + ++ V +R + K
Sbjct: 203 LTFFSGASPASLLAIVVSVASVEVSPGITSATTGLVEVIIRILFK 69
>gb|AC005936.3| Arabidopsis thaliana chromosome 2 clone F5O4 map CIC11A04, complete
sequence
Length = 93212
Score = 29.9 bits (59), Expect(2) = 5.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3 / -1
Query: 222 FNPRPYFRLXINWLYDLTTTDGHHDGSNF 308
F+P +F I WL++ T HH ++F
Sbjct: 38024 FSPFSFFNRQITWLFNNIQTINHHKANSF 37938
Score = 26.3 bits (51), Expect(2) = 5.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2 / -1
Query: 71 FFH*FICKARGYGSQVLFSGD 133
F ++C+ +GYGS V+ G+
Sbjct: 82724 FLFEYVCERKGYGSSVIVIGN 82662
>gb|BH254929.1|BH254929 SALK_017424 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_017424, DNA sequence
Length = 436
Score = 31.8 bits (63), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1 / +3
Query: 10 SKLLLLVDHLSNHHSNPIFHIFPLIHMQSSWL 105
S L++L DHL + + FHI+ L+ ++ WL
Sbjct: 12 SLLMILPDHLYSRTFDSYFHIYYLLKQEALWL 107
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
V, complete sequence
Length = 130299
Score = 31.8 bits (63), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1 / +2
Query: 25 LVDHLSNHHSNPIFHIFPLIHMQSSWL 105
L+ HL NHH+ I + +HMQ S++
Sbjct: 67439 LITHLVNHHAYMIISLLSPMHMQQSYM 67519
>dbj|AP002067.2| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T7B9
Length = 84711
Score = 31.3 bits (62), Expect = 9.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1 / +3
Query: 25 LVDHLSNHHSNPIFHIFPLIHMQSSWL 105
L+ HL NHH+ + + +HMQ S++
Sbjct: 25419 LIAHLVNHHAYKVISLLSPMHMQQSYM 25499
>dbj|AB005244.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRO11
Length = 82415
Score = 31.3 bits (62), Expect = 9.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2 / -1
Query: 20 CSWWIISAITTATPYFIFFH*FICKARGYGSQVL 121
CSW + + YF FFH*+I + YG +VL
Sbjct: 82325 CSW*YMYSCDQYIFYFYFFH*YINFLKNYG*KVL 82224
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 592,031,650
Number of Sequences: 1013581
Number of extensions: 6911051
Number of successful extensions: 251706
Number of sequences better than 10.0: 42
length of database: 302,980,290
effective HSP length: 52
effective length of database: 250,274,078
effective search space used: 13014252056
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)