TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021175.2.1
(1225 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_112830.2| Arabidopsis thaliana structural constituen... 133 3e-067
dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosom... 133 1e-060
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 133 1e-048
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 133 1e-048
gb|AV552923.1|AV552923 AV552923 Arabidopsis thaliana roots ... 103 5e-047
ref|NM_125445.1| Arabidopsis thaliana unknown protein AT5G6... 111 1e-042
gb|BT011223.1| Arabidopsis thaliana 111 2e-042
gb|BT000598.1| Arabidopsis thaliana late embryonic abundant... 109 2e-042
ref|NM_125446.2| Arabidopsis thaliana unknown protein AT5G6... 109 3e-042
gb|AY054263.1| Arabidopsis thaliana AT5g60530/muf9_180 mRNA... 107 8e-042
emb|CQ805856.1| Sequence 2267 from Patent WO2004035798 103 3e-040
gb|BT023723.1| Arabidopsis thaliana At5g54370 mRNA, complet... 103 4e-040
ref|NM_124817.2| Arabidopsis thaliana unknown protein AT5G5... 103 5e-040
dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosom... 111 6e-039
ref|NM_104362.2| Arabidopsis thaliana unknown protein AT1G5... 92 3e-037
gb|AY142522.1| Arabidopsis thaliana unknown protein (At4g27... 94 3e-035
ref|NM_118874.2| Arabidopsis thaliana unknown protein AT4G2... 94 3e-035
gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BA... 92 1e-033
gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BA... 92 2e-033
emb|AL078467.1|ATF27G19 Arabidopsis thaliana DNA chromosome... 94 1e-031
emb|AL030978.1|ATM4I22 Arabidopsis thaliana DNA chromosome ... 94 1e-031
emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosom... 94 7e-031
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 92 3e-029
gb|AV543918.1|AV543918 AV543918 Arabidopsis thaliana roots ... 100 5e-029
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 94 3e-027
gb|AV546945.1|AV546945 AV546945 Arabidopsis thaliana roots ... 100 3e-026
gb|AV550351.1|AV550351 AV550351 Arabidopsis thaliana roots ... 95 2e-024
gb|CW841669.1|CW841669 ET11466.Ds3.04.02.2003.jw87.708 Arab... 111 5e-023
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 111 5e-023
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 111 5e-023
>ref|NM_112830.2| Arabidopsis thaliana structural constituent of cell wall AT3G19430
mRNA, complete cds
Length = 1878
Score = 133 bits (286), Expect(4) = 3e-067
Identities = 49/79 (62%), Positives = 57/79 (72%)
Frame = +1 / +1
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG C DPRF G DG FYFHGKKD +FC++SD LHINAHFIGKR M+RDFTW+Q++
Sbjct: 907 PGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWVQSI 1086
Query: 496 GIRFAHHHLYVAAQRTPRW 552
I F H LYV A +T W
Sbjct: 1087 AILFGTHRLYVGALKTATW 1143
Score = 100 bits (213), Expect(4) = 3e-067
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1 / +1
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLS 957
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG ++ +
Sbjct: 1360 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQT 1539
Query: 958 SDLFSTDCAVARFGG 1002
+ LF+ DC+ ARF G
Sbjct: 1540 TGLFAPDCSAARFTG 1584
Score = 87.7 bits (185), Expect(3) = 8e-030
Identities = 43/79 (54%), Positives = 48/79 (60%)
Frame = -3 / -2
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASETMQKSRSFLPWK 372
H+ V A T + K M W VKSR + LRLPMK ALM R SE QK SFLPWK
Sbjct: 1142 HVAVFRAPTYKR*VPKSMAMDWTHVKSRAIPALRLPMK*ALM*RLGSEIRQKLESFLPWK 963
Query: 371 *KLLPSAPVKRGSPQDTPG 315
*K+ PS P+KRGS Q PG
Sbjct: 962 *KVRPSPPMKRGSWQTDPG 906
Score = 55.1 bits (114), Expect(3) = 8e-030
Identities = 35/69 (50%), Positives = 38/69 (55%)
Frame = -3 / -2
Query: 1001 PPKRATAQSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPR 822
P A QS K S +PP+TGM L LT* *V P TP T S+RS NLKPR
Sbjct: 1583 PVNLAAEQSGAKSPVV*NSLSPPITGMWTPILTRLT*LDL*VCPKTPSTLSLRSWNLKPR 1404
Query: 821 SRCARVSPS 795
SR AR S S
Sbjct: 1403 SR*ARQSSS 1377
Score = 50.6 bits (104), Expect(4) = 3e-067
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1 / +1
Query: 706 ELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
E+ G +I A VVPIT EDSRIH Y V+EDD
Sbjct: 1294 EVEGLLKITARVVPITMEDSRIHGYDVKEDD 1386
Score = 40.9 bits (83), Expect(4) = 3e-067
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1 / +1
Query: 193 LKCTNIKSNKTTCSATCNARCPHKCLIQCPSCKTFCLCD 309
++C +S TC A CP C + C +CK C CD
Sbjct: 787 VRCKKQRSPCYGVEYTCPADCPRSCQVDCVTCKPVCNCD 903
Score = 36.3 bits (73), Expect(3) = 8e-030
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -3 / -2
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS T * WI ESS V+GTTLA + P
Sbjct: 1385 SSSFTS*PWILESSIVIGTTLAVILSKP 1302
>dbj|AB025624.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLD14
Length = 83097
Score = 133 bits (286), Expect(4) = 1e-060
Identities = 49/79 (62%), Positives = 57/79 (72%)
Frame = +1 / -3
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG C DPRF G DG FYFHGKKD +FC++SD LHINAHFIGKR M+RDFTW+Q++
Sbjct: 50557 PGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWVQSI 50378
Query: 496 GIRFAHHHLYVAAQRTPRW 552
I F H LYV A +T W
Sbjct: 50377 AILFGTHRLYVGALKTATW 50321
Score = 100 bits (213), Expect(4) = 1e-060
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1 / -2
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLS 957
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG ++ +
Sbjct: 49928 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQT 49749
Query: 958 SDLFSTDCAVARFGG 1002
+ LF+ DC+ ARF G
Sbjct: 49748 TGLFAPDCSAARFTG 49704
Score = 87.7 bits (185), Expect(3) = 1e-026
Identities = 43/79 (54%), Positives = 48/79 (60%)
Frame = -3 / +3
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASETMQKSRSFLPWK 372
H+ V A T + K M W VKSR + LRLPMK ALM R SE QK SFLPWK
Sbjct: 50322 HVAVFRAPTYKR*VPKSMAMDWTHVKSRAIPALRLPMK*ALM*RLGSEIRQKLESFLPWK 50501
Query: 371 *KLLPSAPVKRGSPQDTPG 315
*K+ PS P+KRGS Q PG
Sbjct: 50502 *KVRPSPPMKRGSWQTDPG 50558
Score = 55.1 bits (114), Expect(3) = 1e-026
Identities = 35/69 (50%), Positives = 38/69 (55%)
Frame = -3 / +1
Query: 1001 PPKRATAQSVEKRSEER*SGAPPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPR 822
P A QS K S +PP+TGM L LT* *V P TP T S+RS NLKPR
Sbjct: 49705 PVNLAAEQSGAKSPVV*NSLSPPITGMWTPILTRLT*LDL*VCPKTPSTLSLRSWNLKPR 49884
Query: 821 SRCARVSPS 795
SR AR S S
Sbjct: 49885 SR*ARQSSS 49911
Score = 50.6 bits (104), Expect(4) = 1e-060
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1 / -2
Query: 706 ELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
E+ G +I A VVPIT EDSRIH Y V+EDD
Sbjct: 49994 EVEGLLKITARVVPITMEDSRIHGYDVKEDD 49902
Score = 36.3 bits (73), Expect(3) = 1e-026
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -3 / +1
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS T * WI ESS V+GTTLA + P
Sbjct: 49903 SSSFTS*PWILESSIVIGTTLAVILSKP 49986
Score = 35.4 bits (71), Expect(4) = 1e-060
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1 / -3
Query: 193 LKCTNIKSNKTTCSATCNARCPHKCLIQCPSCKTFC 300
++C +S TC A CP C + C +CK C
Sbjct: 50770 VRCKKQRSPCYGVEYTCPADCPRSCQVDCVTCKPVC 50663
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 133 bits (286), Expect(2) = 1e-048
Identities = 49/79 (62%), Positives = 57/79 (72%)
Frame = +1 / -1
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG C DPRF G DG FYFHGKKD +FC++SD LHINAHFIGKR M+RDFTW+Q++
Sbjct: 6704952 PGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWVQSI 6704773
Query: 496 GIRFAHHHLYVAAQRTPRW 552
I F H LYV A +T W
Sbjct: 6704772 AILFGTHRLYVGALKTATW 6704716
Score = 100 bits (213), Expect(2) = 1e-048
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1 / -3
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLS 957
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG ++ +
Sbjct: 6704323 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQT 6704144
Query: 958 SDLFSTDCAVARFGG 1002
+ LF+ DC+ ARF G
Sbjct: 6704143 TGLFAPDCSAARFTG 6704099
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 133 bits (286), Expect(2) = 1e-048
Identities = 49/79 (62%), Positives = 57/79 (72%)
Frame = +1 / -3
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG C DPRF G DG FYFHGKKD +FC++SD LHINAHFIGKR M+RDFTW+Q++
Sbjct: 6737337 PGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWVQSI 6737158
Query: 496 GIRFAHHHLYVAAQRTPRW 552
I F H LYV A +T W
Sbjct: 6737157 AILFGTHRLYVGALKTATW 6737101
Score = 100 bits (213), Expect(2) = 1e-048
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1 / -2
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLS 957
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG ++ +
Sbjct: 6736708 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQT 6736529
Query: 958 SDLFSTDCAVARFGG 1002
+ LF+ DC+ ARF G
Sbjct: 6736528 TGLFAPDCSAARFTG 6736484
>gb|AV552923.1|AV552923 AV552923 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ49b06R 5', mRNA sequence
Length = 561
Score = 103 bits (219), Expect(3) = 5e-047
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = +1 / +3
Query: 373 FHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALGIRFAHHHLYVAAQRTPRW 552
FHGKKD +FC++SD LHINAHFIGKR M+RDFTW+Q++ I F H LYV A +T W
Sbjct: 3 FHGKKDSNFCLISDPNLHINAHFIGKRRAGMARDFTWVQSIAILFGTHRLYVGALKTATW 182
Score = 79.9 bits (168), Expect(3) = 5e-047
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +1 / +3
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGG 939
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG
Sbjct: 399 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGG 560
Score = 62.5 bits (130), Expect(3) = 8e-023
Identities = 31/60 (51%), Positives = 34/60 (56%)
Frame = -3 / -3
Query: 551 HLGVLWAAT*RWWCAKRMPSAWIQVKSRLMAGLRLPMKCALMWRAASETMQKSRSFLPWK 372
H+ V A T + K M W VKSR + LRLPMK ALM R SE QK SFLPWK
Sbjct: 181 HVAVFRAPTYKR*VPKSMAMDWTHVKSRAIPALRLPMK*ALM*RLGSEIRQKLESFLPWK 2
Score = 52.8 bits (109), Expect(3) = 8e-023
Identities = 29/48 (60%), Positives = 31/48 (64%)
Frame = -3 / -3
Query: 938 PPMTGMLDVTLRLLT*SGR*VWPSTPCTSSVRS*NLKPRSRCARVSPS 795
PP+TGM L LT* *V P TP T S+RS NLKPRSR AR S S
Sbjct: 559 PPITGM*TPILTRLT*LDL*VCPKTPSTLSLRSWNLKPRSR*ARQSSS 416
Score = 50.6 bits (104), Expect(3) = 5e-047
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1 / +3
Query: 706 ELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
E+ G +I A VVPIT EDSRIH Y V+EDD
Sbjct: 333 EVEGLLKITARVVPITMEDSRIHGYDVKEDD 425
Score = 36.3 bits (73), Expect(3) = 8e-023
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -3 / -3
Query: 797 SSSLTP*LWIRESSAVMGTTLATMRKAP 714
SSS T * WI ESS V+GTTLA + P
Sbjct: 424 SSSFTS*PWILESSIVIGTTLAVILSKP 341
>ref|NM_125445.1| Arabidopsis thaliana unknown protein AT5G60520 mRNA, complete cds
Length = 1017
Score = 111 bits (237), Expect(3) = 1e-042
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG KD +F IVSD L INAHFIG R +RDFTW+QA
Sbjct: 319 GSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFS 498
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F H+L +AA++ W
Sbjct: 499 VMFDSHNLVIAAKKVASW 552
Score = 81.7 bits (172), Expect(3) = 1e-042
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = +1 / +1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF++L+D V GVLG+TYRP YV+ + MP+MGG Y + LFS C
Sbjct: 787 DAFAHLETQFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLC 966
Query: 982 AVARFGGR 1005
V RF G+
Sbjct: 967 NVCRFQGK 990
Score = 27.6 bits (54), Expect(3) = 1e-042
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 715 GAFRIVASVVPITAEDSRIHNYGVREDD 798
G +I V PI E+ R+H Y + +DD
Sbjct: 706 GIVQIDIQVRPIGKEEDRVHKYQLPKDD 789
>gb|BT011223.1| Arabidopsis thaliana
Length = 1232
Score = 111 bits (237), Expect(3) = 2e-042
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +1 / +3
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG KD +F IVSD L INAHFIG R +RDFTW+QA
Sbjct: 417 GSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFS 596
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F H+L +AA++ W
Sbjct: 597 VMFDSHNLVIAAKKVASW 650
Score = 81.7 bits (172), Expect(3) = 2e-042
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = +1 / +3
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF++L+D V GVLG+TYRP YV+ + MP+MGG Y + LFS C
Sbjct: 885 DAFAHLETQFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLC 1064
Query: 982 AVARFGGR 1005
V RF G+
Sbjct: 1065 NVCRFQGK 1088
Score = 27.6 bits (54), Expect(3) = 2e-042
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +3
Query: 715 GAFRIVASVVPITAEDSRIHNYGVREDD 798
G +I V PI E+ R+H Y + +DD
Sbjct: 804 GIVQIDIQVRPIGKEEDRVHKYQLPKDD 887
>gb|BT000598.1| Arabidopsis thaliana late embryonic abundant protein
(At5g60530/muf9_180) mRNA, complete cds
Length = 1320
Score = 109 bits (232), Expect(3) = 2e-042
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG K +F IVSD L INAHFIG R +RDFTW+QAL
Sbjct: 619 GSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFTWVQALN 798
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F +H L + A R +W
Sbjct: 799 VMFENHKLVITANRVNQW 852
Score = 82.6 bits (174), Expect(3) = 2e-042
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +1 / +1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF DL++ V GVLG+TYRPDYV+S MPV+GG Y + LFS C
Sbjct: 1090 DAFAHLETQFKFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTC 1269
Query: 982 AVARF 996
+ RF
Sbjct: 1270 RLCRF 1284
Score = 29.0 bits (57), Expect(3) = 2e-042
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / +1
Query: 739 VVPITAEDSRIHNYGVREDD 798
V PI E++R+HNY + +DD
Sbjct: 1033 VRPIGKEENRVHNYQLPQDD 1092
>ref|NM_125446.2| Arabidopsis thaliana unknown protein AT5G60530 mRNA, complete cds
Length = 1704
Score = 109 bits (232), Expect(3) = 3e-042
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +1 / +2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG K +F IVSD L INAHFIG R +RDFTW+QAL
Sbjct: 713 GSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFTWVQALN 892
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F +H L + A R +W
Sbjct: 893 VMFENHKLVITANRVNQW 946
Score = 82.6 bits (174), Expect(3) = 3e-042
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +1 / +2
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF DL++ V GVLG+TYRPDYV+S MPV+GG Y + LFS C
Sbjct: 1184 DAFAHLETQFKFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTC 1363
Query: 982 AVARF 996
+ RF
Sbjct: 1364 RLCRF 1378
Score = 29.0 bits (57), Expect(3) = 3e-042
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / +2
Query: 739 VVPITAEDSRIHNYGVREDD 798
V PI E++R+HNY + +DD
Sbjct: 1127 VRPIGKEENRVHNYQLPQDD 1186
>gb|AY054263.1| Arabidopsis thaliana AT5g60530/muf9_180 mRNA, complete cds
Length = 1675
Score = 107 bits (229), Expect(3) = 8e-042
Identities = 43/78 (55%), Positives = 49/78 (62%)
Frame = +1 / +2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG K +F IVSD L INAHFIG R RDFTW+QAL
Sbjct: 713 GSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRIRDFTWVQALN 892
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F +H L + A R +W
Sbjct: 893 VMFENHKLVITANRVNQW 946
Score = 82.6 bits (174), Expect(3) = 8e-042
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +1 / +2
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF DL++ V GVLG+TYRPDYV+S MPV+GG Y + LFS C
Sbjct: 1184 DAFAHLETQFKFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTC 1363
Query: 982 AVARF 996
+ RF
Sbjct: 1364 RLCRF 1378
Score = 29.0 bits (57), Expect(3) = 8e-042
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / +2
Query: 739 VVPITAEDSRIHNYGVREDD 798
V PI E++R+HNY + +DD
Sbjct: 1127 VRPIGKEENRVHNYQLPQDD 1186
>emb|CQ805856.1| Sequence 2267 from Patent WO2004035798
Length = 1014
Score = 103 bits (219), Expect(3) = 3e-040
Identities = 41/79 (51%), Positives = 50/79 (63%)
Frame = +1 / +1
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG +C DPRF G DG FYFHGK + +F +VSD+ L IN FIG R +RDFTWIQAL
Sbjct: 247 PGSACYDPRFIGGDGIVFYFHGKSNEEFSLVSDSDLQINGRFIGHRPAGRARDFTWIQAL 426
Query: 496 GIRFAHHHLYVAAQRTPRW 552
G F + + A +T W
Sbjct: 427 GFLFNSNKFSLEAAKTASW 483
Score = 72.1 bits (151), Expect(3) = 3e-040
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +1 / +1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL++ F+F++L+ V G+LG+TYRPD+ N MPV+GG + +S L S DC
Sbjct: 712 DCFAHLEVQFRFFNLSPKVDGILGRTYRPDFQNPAKPGVAMPVVGGEDSFKTSSLLSNDC 891
Query: 982 AVARF 996
F
Sbjct: 892 KTCIF 906
Score = 37.3 bits (75), Expect(3) = 3e-040
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIH+Y V DD
Sbjct: 643 IMINVVPVTKEDDRIHSYKVPSDD 714
>gb|BT023723.1| Arabidopsis thaliana At5g54370 mRNA, complete cds
Length = 1144
Score = 103 bits (219), Expect(3) = 4e-040
Identities = 41/79 (51%), Positives = 50/79 (63%)
Frame = +1 / +2
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG +C DPRF G DG FYFHGK + +F +VSD+ L IN FIG R +RDFTWIQAL
Sbjct: 263 PGSACYDPRFIGGDGIVFYFHGKSNEEFSLVSDSDLQINGRFIGHRPAGRARDFTWIQAL 442
Query: 496 GIRFAHHHLYVAAQRTPRW 552
G F + + A +T W
Sbjct: 443 GFLFNSNKFSLEAAKTASW 499
Score = 72.1 bits (151), Expect(3) = 4e-040
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +1 / +2
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL++ F+F++L+ V G+LG+TYRPD+ N MPV+GG + +S L S DC
Sbjct: 728 DCFAHLEVQFRFFNLSPKVDGILGRTYRPDFQNPAKPGVAMPVVGGEDSFKTSSLLSNDC 907
Query: 982 AVARF 996
F
Sbjct: 908 KTCIF 922
Score = 37.3 bits (75), Expect(3) = 4e-040
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIH+Y V DD
Sbjct: 659 IMINVVPVTKEDDRIHSYKVPSDD 730
>ref|NM_124817.2| Arabidopsis thaliana unknown protein AT5G54370 mRNA, complete cds
Length = 1235
Score = 103 bits (219), Expect(3) = 5e-040
Identities = 41/79 (51%), Positives = 50/79 (63%)
Frame = +1 / +1
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQAL 495
PG +C DPRF G DG FYFHGK + +F +VSD+ L IN FIG R +RDFTWIQAL
Sbjct: 271 PGSACYDPRFIGGDGIVFYFHGKSNEEFSLVSDSDLQINGRFIGHRPAGRARDFTWIQAL 450
Query: 496 GIRFAHHHLYVAAQRTPRW 552
G F + + A +T W
Sbjct: 451 GFLFNSNKFSLEAAKTASW 507
Score = 72.1 bits (151), Expect(3) = 5e-040
Identities = 28/65 (43%), Positives = 40/65 (61%)
Frame = +1 / +1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL++ F+F++L+ V G+LG+TYRPD+ N MPV+GG + +S L S DC
Sbjct: 736 DCFAHLEVQFRFFNLSPKVDGILGRTYRPDFQNPAKPGVAMPVVGGEDSFKTSSLLSNDC 915
Query: 982 AVARF 996
F
Sbjct: 916 KTCIF 930
Score = 37.3 bits (75), Expect(3) = 5e-040
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIH+Y V DD
Sbjct: 667 IMINVVPVTKEDDRIHSYKVPSDD 738
>dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9
Length = 77298
Score = 111 bits (237), Expect(3) = 6e-039
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +1 / -2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG KD +F IVSD L INAHFIG R +RDFTW+QA
Sbjct: 52985 GSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFS 52806
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F H+L +AA++ W
Sbjct: 52805 VMFDSHNLVIAAKKVASW 52752
Score = 109 bits (232), Expect(3) = 6e-039
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +1 / -1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG K +F IVSD L INAHFIG R +RDFTW+QAL
Sbjct: 55398 GSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFTWVQALN 55219
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F +H L + A R +W
Sbjct: 55218 VMFENHKLVITANRVNQW 55165
Score = 82.6 bits (174), Expect(3) = 6e-039
Identities = 34/65 (52%), Positives = 42/65 (64%)
Frame = +1 / -1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF DL++ V GVLG+TYRPDYV+S MPV+GG Y + LFS C
Sbjct: 54927 DAFAHLETQFKFLDLSELVEGVLGKTYRPDYVSSAKTGVPMPVLGGEDKYQTPSLFSPTC 54748
Query: 982 AVARF 996
+ RF
Sbjct: 54747 RLCRF 54733
Score = 81.7 bits (172), Expect(3) = 6e-039
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = +1 / -2
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AHL+ FKF++L+D V GVLG+TYRP YV+ + MP+MGG Y + LFS C
Sbjct: 52517 DAFAHLETQFKFFNLSDLVEGVLGKTYRPGYVSPVKTGVPMPMMGGEDKYQTPSLFSPLC 52338
Query: 982 AVARFGGR 1005
V RF G+
Sbjct: 52337 NVCRFQGK 52314
Score = 29.0 bits (57), Expect(3) = 6e-039
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / -1
Query: 739 VVPITAEDSRIHNYGVREDD 798
V PI E++R+HNY + +DD
Sbjct: 54984 VRPIGKEENRVHNYQLPQDD 54925
Score = 27.6 bits (54), Expect(3) = 6e-039
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / -2
Query: 715 GAFRIVASVVPITAEDSRIHNYGVREDD 798
G +I V PI E+ R+H Y + +DD
Sbjct: 52598 GIVQIDIQVRPIGKEEDRVHKYQLPKDD 52515
>ref|NM_104362.2| Arabidopsis thaliana unknown protein AT1G54890 mRNA, complete cds
Length = 1131
Score = 92.3 bits (195), Expect(3) = 3e-037
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G +C DPRF G DG FYFHGK+D F ++SD +NA FIG R +RDFTWIQ+LG
Sbjct: 292 GSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLG 471
Query: 499 IRF 507
+ F
Sbjct: 472 LIF 480
Score = 65.7 bits (137), Expect(3) = 3e-037
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1 / +1
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D AHL++ F+F L+ +V GVLG+TY+ D+ N MPV+GG Y ++ L T
Sbjct: 757 EDDCFAHLEVQFRFLKLSSNVEGVLGRTYKEDFKNPAKPGVAMPVVGGEDKYRTASLLET 936
Query: 976 DCAVARFGG 1002
C + G
Sbjct: 937 SCNACVYSG 963
Score = 45.1 bits (92), Expect(3) = 3e-037
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1 / +1
Query: 640 WSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
WSPP + L+ I +VVP+T ED IH YG+ EDD
Sbjct: 607 WSPPLGDYIKIERTSDINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDD 765
>gb|AY142522.1| Arabidopsis thaliana unknown protein (At4g27400) mRNA, complete cds
Length = 1057
Score = 93.6 bits (198), Expect(3) = 3e-035
Identities = 39/78 (50%), Positives = 43/78 (55%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHGK + F IVSD INA F G R +RDFTWIQALG
Sbjct: 259 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 438
Query: 499 IRFAHHHLYVAAQRTPRW 552
F H + + W
Sbjct: 439 FLFNSHKFSLETTKVATW 492
Score = 64.8 bits (135), Expect(3) = 3e-035
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / +1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AH ++ FKF +L+ V G+LG+TYRPD+ N MPV+GG + +S L S C
Sbjct: 721 DCFAHFEVQFKFINLSPKVDGILGRTYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVC 900
Query: 982 AVARF 996
F
Sbjct: 901 KTCLF 915
Score = 37.7 bits (76), Expect(3) = 3e-035
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIHNY + DD
Sbjct: 652 IMVNVVPVTKEDDRIHNYKLPVDD 723
>ref|NM_118874.2| Arabidopsis thaliana unknown protein AT4G27400 mRNA, complete cds
Length = 1057
Score = 93.6 bits (198), Expect(3) = 3e-035
Identities = 39/78 (50%), Positives = 43/78 (55%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHGK + F IVSD INA F G R +RDFTWIQALG
Sbjct: 259 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 438
Query: 499 IRFAHHHLYVAAQRTPRW 552
F H + + W
Sbjct: 439 FLFNSHKFSLETTKVATW 492
Score = 64.8 bits (135), Expect(3) = 3e-035
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / +1
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AH ++ FKF +L+ V G+LG+TYRPD+ N MPV+GG + +S L S C
Sbjct: 721 DCFAHFEVQFKFINLSPKVDGILGRTYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVC 900
Query: 982 AVARF 996
F
Sbjct: 901 KTCLF 915
Score = 37.7 bits (76), Expect(3) = 3e-035
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +1
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIHNY + DD
Sbjct: 652 IMVNVVPVTKEDDRIHNYKLPVDD 723
>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete
sequence
Length = 77923
Score = 92.3 bits (195), Expect(3) = 1e-033
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G +C DPRF G DG FYFHGK+D F ++SD +NA FIG R +RDFTWIQ+LG
Sbjct: 12901 GSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLG 13080
Query: 499 IRF 507
+ F
Sbjct: 13081 LIF 13089
Score = 65.7 bits (137), Expect(3) = 1e-033
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1 / +1
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D AHL++ F+F L+ +V GVLG+TY+ D+ N MPV+GG Y ++ L T
Sbjct: 13366 EDDCFAHLEVQFRFLKLSSNVEGVLGRTYKEDFKNPAKPGVAMPVVGGEDKYRTASLLET 13545
Query: 976 DCAVARFGG 1002
C + G
Sbjct: 13546 SCNACVYSG 13572
Score = 45.1 bits (92), Expect(3) = 1e-033
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1 / +1
Query: 640 WSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
WSPP + L+ I +VVP+T ED IH YG+ EDD
Sbjct: 13216 WSPPLGDYIKIERTSDINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDD 13374
>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
sequence
Length = 102135
Score = 92.3 bits (195), Expect(3) = 2e-033
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +1 / -1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G +C DPRF G DG FYFHGK+D F ++SD +NA FIG R +RDFTWIQ+LG
Sbjct: 81498 GSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLG 81319
Query: 499 IRF 507
+ F
Sbjct: 81318 LIF 81310
Score = 65.7 bits (137), Expect(3) = 2e-033
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1 / -1
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D AHL++ F+F L+ +V GVLG+TY+ D+ N MPV+GG Y ++ L T
Sbjct: 81033 EDDCFAHLEVQFRFLKLSSNVEGVLGRTYKEDFKNPAKPGVAMPVVGGEDKYRTASLLET 80854
Query: 976 DCAVARFGG 1002
C + G
Sbjct: 80853 SCNACVYSG 80827
Score = 45.1 bits (92), Expect(3) = 2e-033
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1 / -1
Query: 640 WSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
WSPP + L+ I +VVP+T ED IH YG+ EDD
Sbjct: 81183 WSPPLGDYIKIERTSDINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDD 81025
>emb|AL078467.1|ATF27G19 Arabidopsis thaliana DNA chromosome 4, BAC clone F27G19 (ESSA project)
Length = 82381
Score = 93.6 bits (198), Expect(3) = 1e-031
Identities = 39/78 (50%), Positives = 43/78 (55%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHGK + F IVSD INA F G R +RDFTWIQALG
Sbjct: 29329 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 29508
Query: 499 IRFAHHHLYVAAQRTPRW 552
F H + + W
Sbjct: 29509 FLFNSHKFSLETTKVATW 29562
Score = 64.8 bits (135), Expect(3) = 1e-031
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / +2
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AH ++ FKF +L+ V G+LG+TYRPD+ N MPV+GG + +S L S C
Sbjct: 29921 DCFAHFEVQFKFINLSPKVDGILGRTYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVC 30100
Query: 982 AVARF 996
F
Sbjct: 30101 KTCLF 30115
Score = 37.7 bits (76), Expect(3) = 1e-031
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIHNY + DD
Sbjct: 29852 IMVNVVPVTKEDDRIHNYKLPVDD 29923
>emb|AL030978.1|ATM4I22 Arabidopsis thaliana DNA chromosome 4, P1 clone M4I22 (ESSA project)
Length = 83371
Score = 93.6 bits (198), Expect(3) = 1e-031
Identities = 39/78 (50%), Positives = 43/78 (55%)
Frame = +1 / +2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHGK + F IVSD INA F G R +RDFTWIQALG
Sbjct: 81749 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 81928
Query: 499 IRFAHHHLYVAAQRTPRW 552
F H + + W
Sbjct: 81929 FLFNSHKFSLETTKVATW 81982
Score = 64.8 bits (135), Expect(3) = 1e-031
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / +3
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AH ++ FKF +L+ V G+LG+TYRPD+ N MPV+GG + +S L S C
Sbjct: 82341 DCFAHFEVQFKFINLSPKVDGILGRTYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVC 82520
Query: 982 AVARF 996
F
Sbjct: 82521 KTCLF 82535
Score = 37.7 bits (76), Expect(3) = 1e-031
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +3
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIHNY + DD
Sbjct: 82272 IMVNVVPVTKEDDRIHNYKLPVDD 82343
>emb|AL161571.2|ATCHRIV67 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 67
Length = 200001
Score = 93.6 bits (198), Expect(3) = 7e-031
Identities = 39/78 (50%), Positives = 43/78 (55%)
Frame = +1 / +2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHGK + F IVSD INA F G R +RDFTWIQALG
Sbjct: 16223 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 16402
Query: 499 IRFAHHHLYVAAQRTPRW 552
F H + + W
Sbjct: 16403 FLFNSHKFSLETTKVATW 16456
Score = 64.8 bits (135), Expect(3) = 7e-031
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / +3
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AH ++ FKF +L+ V G+LG+TYRPD+ N MPV+GG + +S L S C
Sbjct: 16815 DCFAHFEVQFKFINLSPKVDGILGRTYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVC 16994
Query: 982 AVARF 996
F
Sbjct: 16995 KTCLF 17009
Score = 37.7 bits (76), Expect(3) = 7e-031
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +3
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIHNY + DD
Sbjct: 16746 IMVNVVPVTKEDDRIHNYKLPVDD 16817
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 92.3 bits (195), Expect(3) = 3e-029
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +1 / +3
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G +C DPRF G DG FYFHGK+D F ++SD +NA FIG R +RDFTWIQ+LG
Sbjct: 4822893 GSACLDPRFIGGDGIVFYFHGKRDEHFALISDVDFQVNARFIGLRPNGRARDFTWIQSLG 4823072
Query: 499 IRF 507
+ F
Sbjct: 4823073 LIF 4823081
Score = 65.7 bits (137), Expect(3) = 3e-029
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1 / +3
Query: 796 DGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFST 975
+ D AHL++ F+F L+ +V GVLG+TY+ D+ N MPV+GG Y ++ L T
Sbjct: 4823358 EDDCFAHLEVQFRFLKLSSNVEGVLGRTYKEDFKNPAKPGVAMPVVGGEDKYRTASLLET 4823537
Query: 976 DCAVARFGG 1002
C + G
Sbjct: 4823538 SCNACVYSG 4823564
Score = 45.1 bits (92), Expect(3) = 3e-029
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1 / +3
Query: 640 WSPPTAPALSXXXXXXXXXXXXELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
WSPP + L+ I +VVP+T ED IH YG+ EDD
Sbjct: 4823208 WSPPLGDYIKIERTSDINSVLVTLQDIAEIWINVVPVTKEDDIIHKYGIPEDD 4823366
>gb|AV543918.1|AV543918 AV543918 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ28a04F 3', mRNA sequence
Length = 616
Score = 100 bits (213), Expect(2) = 5e-029
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1 / -3
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLS 957
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG ++ +
Sbjct: 437 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQT 258
Query: 958 SDLFSTDCAVARFGG 1002
+ LF+ DC+ ARF G
Sbjct: 257 TGLFAPDCSAARFTG 213
Score = 50.6 bits (104), Expect(2) = 5e-029
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1 / -3
Query: 706 ELRGAFRIVASVVPITAEDSRIHNYGVREDD 798
E+ G +I A VVPIT EDSRIH Y V+EDD
Sbjct: 503 EVEGLLKITARVVPITMEDSRIHGYDVKEDD 411
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 93.6 bits (198), Expect(3) = 3e-027
Identities = 39/78 (50%), Positives = 43/78 (55%)
Frame = +1 / +1
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHGK + F IVSD INA F G R +RDFTWIQALG
Sbjct: 9618514 GSICLDPRFIGGDGIVFYFHGKSNEHFSIVSDPDFQINARFTGHRPAGRTRDFTWIQALG 9618693
Query: 499 IRFAHHHLYVAAQRTPRW 552
F H + + W
Sbjct: 9618694 FLFNSHKFSLETTKVATW 9618747
Score = 64.8 bits (135), Expect(3) = 3e-027
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +1 / +2
Query: 802 DTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLSSDLFSTDC 981
D AH ++ FKF +L+ V G+LG+TYRPD+ N MPV+GG + +S L S C
Sbjct: 9619106 DCFAHFEVQFKFINLSPKVDGILGRTYRPDFKNPAKPGVVMPVVGGEDSFRTSSLLSHVC 9619285
Query: 982 AVARF 996
F
Sbjct: 9619286 KTCLF 9619300
Score = 37.7 bits (76), Expect(3) = 3e-027
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 727 IVASVVPITAEDSRIHNYGVREDD 798
I+ +VVP+T ED RIHNY + DD
Sbjct: 9619037 IMVNVVPVTKEDDRIHNYKLPVDD 9619108
>gb|AV546945.1|AV546945 AV546945 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL22c01F 3', mRNA sequence
Length = 551
Score = 100 bits (213), Expect(2) = 3e-026
Identities = 40/75 (53%), Positives = 55/75 (73%)
Frame = +1 / -3
Query: 778 YGVREDDGDTLAHLDLGFKFYDLTDDVHGVLGQTYRPDYVNSLNVTSNMPVMGGAPDYLS 957
+G + D LAHLDLGFKF DL+D+V GVLGQTYR +YV+ + + +MPVMGG ++ +
Sbjct: 516 HGYDVKEDDCLAHLDLGFKFQDLSDNVDGVLGQTYRSNYVSRVKIGVHMPVMGGDREFQT 337
Query: 958 SDLFSTDCAVARFGG 1002
+ LF+ DC+ ARF G
Sbjct: 336 TGLFAPDCSAARFTG 292
Score = 41.4 bits (84), Expect(2) = 3e-026
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +1 / -3
Query: 739 VVPITAEDSRIHNYGVREDD 798
VVPIT EDSRIH Y V+EDD
Sbjct: 549 VVPITMEDSRIHGYDVKEDD 490
>gb|AV550351.1|AV550351 AV550351 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ111b11R 5', mRNA sequence
Length = 407
Score = 94.5 bits (200), Expect(2) = 2e-024
Identities = 35/52 (67%), Positives = 39/52 (75%)
Frame = +1 / +1
Query: 316 PGVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSR 471
PG C DPRF G DG FYFHGKKD +FC++SD LHINAHFIGKR M+R
Sbjct: 250 PGSVCQDPRFIGGDGLTFYFHGKKDSNFCLISDPNLHINAHFIGKRRAGMAR 405
Score = 40.9 bits (83), Expect(2) = 2e-024
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1 / +1
Query: 193 LKCTNIKSNKTTCSATCNARCPHKCLIQCPSCKTFCLCD 309
++C +S TC A CP C + C +CK C CD
Sbjct: 130 VRCKKQRSPCYGVEYTCPADCPRSCQVDCVTCKPVCNCD 246
>gb|CW841669.1|CW841669 ET11466.Ds3.04.02.2003.jw87.708 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET11466, DNA sequence
Length = 708
Score = 111 bits (237), Expect = 5e-023
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +1 / +3
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG KD +F IVSD L INAHFIG R +RDFTW+QA
Sbjct: 225 GSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFS 404
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F H+L +AA++ W
Sbjct: 405 VMFDSHNLVIAAKKVASW 458
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 111 bits (237), Expect = 5e-023
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +1 / -3
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG KD +F IVSD L INAHFIG R +RDFTW+QA
Sbjct: 21617798 GSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFS 21617619
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F H+L +AA++ W
Sbjct: 21617618 VMFDSHNLVIAAKKVASW 21617565
Score = 109 bits (232), Expect = 2e-022
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +1 / -2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG K +F IVSD L INAHFIG R +RDFTW+QAL
Sbjct: 21620211 GSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFTWVQALN 21620032
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F +H L + A R +W
Sbjct: 21620031 VMFENHKLVITANRVNQW 21619978
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 111 bits (237), Expect = 5e-023
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +1 / -3
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG KD +F IVSD L INAHFIG R +RDFTW+QA
Sbjct: 24349711 GSLCYDPRFVGGDGVMFYFHGNKDGNFAIVSDENLQINAHFIGTRPAGRTRDFTWVQAFS 24349532
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F H+L +AA++ W
Sbjct: 24349531 VMFDSHNLVIAAKKVASW 24349478
Score = 109 bits (232), Expect = 2e-022
Identities = 43/78 (55%), Positives = 50/78 (64%)
Frame = +1 / -2
Query: 319 GVSCGDPRFTGADGNNFYFHGKKDRDFCIVSDAALHINAHFIGKRNPAMSRDFTWIQALG 498
G C DPRF G DG FYFHG K +F IVSD L INAHFIG R +RDFTW+QAL
Sbjct: 24352124 GSLCYDPRFVGGDGVMFYFHGSKGGNFAIVSDNNLQINAHFIGTRPVGRTRDFTWVQALN 24351945
Query: 499 IRFAHHHLYVAAQRTPRW 552
+ F +H L + A R +W
Sbjct: 24351944 VMFENHKLVITANRVNQW 24351891
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,366,920,771
Number of Sequences: 1013581
Number of extensions: 14704579
Number of successful extensions: 83674
Number of sequences better than 1.0e-020: 36
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 85822160550
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)