TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9232502.2.1
(560 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF333972.1|AF333972 Arabidopsis thaliana fasciclin-like ... 102 7e-021
emb|BX255819.1| Arabidopsis thaliana transposon insertion S... 102 7e-021
emb|BX255830.1| Arabidopsis thaliana transposon insertion S... 102 7e-021
gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C... 102 7e-021
ref|NM_127612.2| Arabidopsis thaliana FLA6 (fasciclin-like ... 102 7e-021
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 102 7e-021
>gb|AF333972.1|AF333972 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 6
(Fla6) mRNA, complete cds
Length = 744
Score = 102 bits (218), Expect = 7e-021
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2 / +1
Query: 379 QFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQMVL 200
QF+ QLL+ T+V Q++ QL S G+TI APT+ AF+K+K G LN L+ Q+QIQ++L
Sbjct: 142 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLML 321
Query: 199 YCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Y ++P++YSLS L S V TQ +G DG
Sbjct: 322 YHIIPKYYSLSDLLLASNPVRTQATGQDG 408
>emb|BX255819.1| Arabidopsis thaliana transposon insertion STS SM_3.25058, sequence
tagged site
Length = 465
Score = 102 bits (218), Expect = 7e-021
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2 / +3
Query: 379 QFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQMVL 200
QF+ QLL+ T+V Q++ QL S G+TI APT+ AF+K+K G LN L+ Q+QIQ++L
Sbjct: 141 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLML 320
Query: 199 YCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Y ++P++YSLS L S V TQ +G DG
Sbjct: 321 YHIIPKYYSLSDLLLASNPVRTQATGQDG 407
>emb|BX255830.1| Arabidopsis thaliana transposon insertion STS SM_3.25075, sequence
tagged site
Length = 466
Score = 102 bits (218), Expect = 7e-021
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2 / +3
Query: 379 QFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQMVL 200
QF+ QLL+ T+V Q++ QL S G+TI APT+ AF+K+K G LN L+ Q+QIQ++L
Sbjct: 141 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLML 320
Query: 199 YCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Y ++P++YSLS L S V TQ +G DG
Sbjct: 321 YHIIPKYYSLSDLLLASNPVRTQATGQDG 407
>gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map mi148, complete
sequence
Length = 52784
Score = 102 bits (218), Expect = 7e-021
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2 / +1
Query: 379 QFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQMVL 200
QF+ QLL+ T+V Q++ QL S G+TI APT+ AF+K+K G LN L+ Q+QIQ++L
Sbjct: 34264 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLML 34443
Query: 199 YCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Y ++P++YSLS L S V TQ +G DG
Sbjct: 34444 YHIIPKYYSLSDLLLASNPVRTQATGQDG 34530
>ref|NM_127612.2| Arabidopsis thaliana FLA6 (fasciclin-like arabinogalactan-protein
6) AT2G20520 (FLA6) mRNA, complete cds
Length = 799
Score = 102 bits (218), Expect = 7e-021
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2 / +1
Query: 379 QFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQMVL 200
QF+ QLL+ T+V Q++ QL S G+TI APT+ AF+K+K G LN L+ Q+QIQ++L
Sbjct: 142 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLML 321
Query: 199 YCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Y ++P++YSLS L S V TQ +G DG
Sbjct: 322 YHIIPKYYSLSDLLLASNPVRTQATGQDG 408
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 102 bits (218), Expect = 7e-021
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2 / +3
Query: 379 QFSEFRQLLHDTRVDTQINAQLTDSYNGLTIMAPTNAAFDKMKAGVLNGLSPQEQIQMVL 200
QF+ QLL+ T+V Q++ QL S G+TI APT+ AF+K+K G LN L+ Q+QIQ++L
Sbjct: 8847885 QFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLML 8848064
Query: 199 YCVLPRFYSLSMLGTLSGKVNTQGSGHDG 113
Y ++P++YSLS L S V TQ +G DG
Sbjct: 8848065 YHIIPKYYSLSDLLLASNPVRTQATGQDG 8848151
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 545,697,169
Number of Sequences: 1013581
Number of extensions: 5105379
Number of successful extensions: 98366
Number of sequences better than 1.0e-020: 7
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 32387566885
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)