TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636621.2.1
(691 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY045896.1| Arabidopsis thaliana putative nodulin protei... 154 3e-036
gb|AY091450.1| Arabidopsis thaliana putative nodulin protei... 154 3e-036
gb|BT000668.1| Arabidopsis thaliana clone RAFL07-07-I04 (R1... 154 3e-036
emb|CQ804562.1| Sequence 973 from Patent WO2004035798 154 3e-036
ref|NM_106203.3| Arabidopsis thaliana unknown protein AT1G7... 154 3e-036
ref|NM_112703.3| Arabidopsis thaliana unknown protein AT3G1... 138 2e-031
ref|NM_001035644.1| Arabidopsis thaliana unknown protein AT... 138 2e-031
gb|AV553280.1|AV553280 AV553280 Arabidopsis thaliana roots ... 134 3e-030
gb|BX840060.1|BX840060 BX840060 Arabidopsis thaliana Hormon... 133 4e-030
gb|AV785333.1|AV785333 AV785333 RAFL6 Arabidopsis thaliana ... 129 1e-028
gb|AV527105.1|AV527105 AV527105 Arabidopsis thaliana aboveg... 124 2e-027
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 92 4e-026
gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis tha... 92 4e-026
gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BA... 92 4e-026
emb|BX817624.1|CNS0AEM4 Arabidopsis thaliana Full-length cD... 90 6e-026
gb|AY087537.1| Arabidopsis thaliana clone 36442 mRNA, compl... 118 1e-025
ref|NM_115181.1| Arabidopsis thaliana unknown protein AT3G5... 118 1e-025
gb|AV785039.1|AV785039 AV785039 RAFL6 Arabidopsis thaliana ... 114 3e-024
gb|CB257406.1|CB257406 95-E012744-027-007-N24-T7R MPIZ-ADIS... 103 1e-023
gb|AV540435.1|AV540435 AV540435 Arabidopsis thaliana roots ... 111 2e-023
emb|BX824196.1|CNS0A6W7 Arabidopsis thaliana Full-length cD... 110 4e-023
dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosom... 77 2e-021
gb|BP834501.1|BP834501 BP834501 RAFL19 Arabidopsis thaliana... 63 9e-021
>gb|AY045896.1| Arabidopsis thaliana putative nodulin protein (At1g75500) mRNA,
complete cds
Length = 1697
Score = 154 bits (331), Expect = 3e-036
Identities = 65/108 (60%), Positives = 78/108 (72%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+Q
Sbjct: 790 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQ 969
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGA 366
PVQT+ VA+MAS LG++ Y LYFVL+GKS E+K A
Sbjct: 970 PVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 1113
Score = 131 bits (280), Expect = 3e-029
Identities = 64/105 (60%), Positives = 72/105 (68%)
Frame = +1 / -1
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 1112 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 933
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+HQI ANA PDAT PA RMVKSS PE S S KAAM +N
Sbjct: 932 IHQI*TANAIPDATIPA*RMVKSSQPE*KTQA*ESLSQKAAMIKN 798
>gb|AY091450.1| Arabidopsis thaliana putative nodulin protein (At1g75500) mRNA,
complete cds
Length = 1201
Score = 154 bits (331), Expect = 3e-036
Identities = 65/108 (60%), Positives = 78/108 (72%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+Q
Sbjct: 721 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQ 900
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGA 366
PVQT+ VA+MAS LG++ Y LYFVL+GKS E+K A
Sbjct: 901 PVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 1044
Score = 131 bits (280), Expect = 3e-029
Identities = 64/105 (60%), Positives = 72/105 (68%)
Frame = +1 / -3
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 1043 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 864
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+HQI ANA PDAT PA RMVKSS PE S S KAAM +N
Sbjct: 863 IHQI*TANAIPDATIPA*RMVKSSQPE*KTQA*ESLSQKAAMIKN 729
>gb|BT000668.1| Arabidopsis thaliana clone RAFL07-07-I04 (R10794) putative nodulin
(At1g75500) mRNA, complete cds
Length = 1632
Score = 154 bits (331), Expect = 3e-036
Identities = 65/108 (60%), Positives = 78/108 (72%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+Q
Sbjct: 790 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQ 969
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGA 366
PVQT+ VA+MAS LG++ Y LYFVL+GKS E+K A
Sbjct: 970 PVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 1113
Score = 131 bits (280), Expect = 3e-029
Identities = 64/105 (60%), Positives = 72/105 (68%)
Frame = +1 / -2
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 1112 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 933
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+HQI ANA PDAT PA RMVKSS PE S S KAAM +N
Sbjct: 932 IHQI*TANAIPDATIPA*RMVKSSQPE*KTQA*ESLSQKAAMIKN 798
>emb|CQ804562.1| Sequence 973 from Patent WO2004035798
Length = 1170
Score = 154 bits (331), Expect = 3e-036
Identities = 65/108 (60%), Positives = 78/108 (72%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+Q
Sbjct: 721 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQ 900
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGA 366
PVQT+ VA+MAS LG++ Y LYFVL+GKS E+K A
Sbjct: 901 PVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 1044
Score = 131 bits (280), Expect = 3e-029
Identities = 64/105 (60%), Positives = 72/105 (68%)
Frame = +1 / -2
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 1043 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 864
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+HQI ANA PDAT PA RMVKSS PE S S KAAM +N
Sbjct: 863 IHQI*TANAIPDATIPA*RMVKSSQPE*KTQA*ESLSQKAAMIKN 729
>ref|NM_106203.3| Arabidopsis thaliana unknown protein AT1G75500 mRNA, complete cds
Length = 1729
Score = 154 bits (331), Expect = 3e-036
Identities = 65/108 (60%), Positives = 78/108 (72%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+Q
Sbjct: 790 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQ 969
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGA 366
PVQT+ VA+MAS LG++ Y LYFVL+GKS E+K A
Sbjct: 970 PVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFA 1113
Score = 131 bits (280), Expect = 3e-029
Identities = 64/105 (60%), Positives = 72/105 (68%)
Frame = +1 / -3
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 1112 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 933
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+HQI ANA PDAT PA RMVKSS PE S S KAAM +N
Sbjct: 932 IHQI*TANAIPDATIPA*RMVKSSQPE*KTQA*ESLSQKAAMIKN 798
>ref|NM_112703.3| Arabidopsis thaliana unknown protein AT3G18200 transcript variant
AT3G18200.1 mRNA, complete cds
Length = 1318
Score = 138 bits (295), Expect = 2e-031
Identities = 59/106 (55%), Positives = 72/106 (67%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
L+QFL IA F E DL+ W + S ELFTILYAG++ASG+ LQ WCI + GP+F AVFQ
Sbjct: 702 LIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQ 881
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
P+QT+ VA MA ILGDQLY+ LY VLWGK+ E+K
Sbjct: 882 PLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERK 1019
Score = 116 bits (249), Expect = 5e-025
Identities = 55/105 (52%), Positives = 65/105 (61%)
Frame = +1 / -1
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+ LP TK* P I+TAP IPP + SPR+ A+ AT +V GWKTA K+GP L
Sbjct: 1024 ASFLSSFLPQRTK*SPSIINTAPTIPPEYN*SPRIRNAIAATRSVWRGWKTATKTGPLL* 845
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+H + R PDA PAYRMVKSS E L RS S K A+ RN
Sbjct: 844 IHHV*R*TTNPDAIIPAYRMVKSSSQETMIQLFRSVSTKRAITRN 710
>ref|NM_001035644.1| Arabidopsis thaliana unknown protein AT3G18200 transcript variant
AT3G18200.2 mRNA, complete cds
Length = 1317
Score = 138 bits (295), Expect = 2e-031
Identities = 59/106 (55%), Positives = 72/106 (67%)
Frame = -3 / +2
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
L+QFL IA F E DL+ W + S ELFTILYAG++ASG+ LQ WCI + GP+F AVFQ
Sbjct: 701 LIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQ 880
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
P+QT+ VA MA ILGDQLY+ LY VLWGK+ E+K
Sbjct: 881 PLQTLLVAAMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERK 1018
Score = 116 bits (249), Expect = 5e-025
Identities = 55/105 (52%), Positives = 65/105 (61%)
Frame = +1 / -1
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+ LP TK* P I+TAP IPP + SPR+ A+ AT +V GWKTA K+GP L
Sbjct: 1023 ASFLSSFLPQRTK*SPSIINTAPTIPPEYN*SPRIRNAIAATRSVWRGWKTATKTGPLL* 844
Query: 547 MHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+H + R PDA PAYRMVKSS E L RS S K A+ RN
Sbjct: 843 IHHV*R*TTNPDAIIPAYRMVKSSSQETMIQLFRSVSTKRAITRN 709
>gb|AV553280.1|AV553280 AV553280 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ59b01R 5', mRNA sequence
Length = 523
Score = 134 bits (287), Expect = 3e-030
Identities = 55/94 (58%), Positives = 67/94 (71%)
Frame = -3 / +1
Query: 656 EEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMA 477
+ D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MA
Sbjct: 241 QRDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 420
Query: 476 SAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEK 375
S LG++ Y LYFVL+GKS E+
Sbjct: 421 SIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEER 522
Score = 119 bits (255), Expect = 8e-026
Identities = 55/83 (66%), Positives = 62/83 (74%)
Frame = +1 / -3
Query: 379 SALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQI 558
S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS+HQI
Sbjct: 518 SSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLSIHQI 339
Query: 559 CRANATPDATRPAYRMVKSSPPE 627
ANA PDAT PA RMVKSS PE
Sbjct: 338 *TANAIPDATIPA*RMVKSSQPE 270
>gb|BX840060.1|BX840060 BX840060 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH65ZB10 5PRIM, mRNA
sequence
Length = 1028
Score = 133 bits (286), Expect = 4e-030
Identities = 58/106 (54%), Positives = 70/106 (66%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
L+QFL IA F E DL+ W + S ELFTILYAG++ASG+ LQ WCI + GP+F AVFQ
Sbjct: 703 LIQFLVIALFVETDLNDWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQ 882
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
P+QT+ VA MA ILGDQLY+ LY VLWG+ KK
Sbjct: 883 PLQTLLVAAMAFLILGDQLYSGGIFGAVFIMLGLYLVLWGQKRRKK 1020
Score = 109 bits (232), Expect = 1e-022
Identities = 52/103 (50%), Positives = 60/103 (58%)
Frame = +1 / -1
Query: 373 FFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMH 552
FF P TK* P I TAP IPP + SPR+ A+ AT +V GWKTA K+GP L +H
Sbjct: 1019 FFLRFCPQRTK*SPSIIKTAPKIPPEYN*SPRIRNAIAATRSVWRGWKTATKTGPLL*IH 840
Query: 553 QICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
+ R PDA PAYRMVKSS E RS S K A+ RN
Sbjct: 839 HV*R*TTNPDAIIPAYRMVKSSSQETMIQSFRSVSTKRAITRN 711
>gb|AV785333.1|AV785333 AV785333 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-15-C10 3',
mRNA sequence
Length = 693
Score = 129 bits (276), Expect = 1e-028
Identities = 54/86 (62%), Positives = 65/86 (75%)
Frame = -3 / -2
Query: 623 GGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTX 444
G ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 692 GWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLG 513
Query: 443 XXXXXXXXXXXLYFVLWGKSAEKKGA 366
LYFVL+GKS E+K A
Sbjct: 512 GIIGAVLIIAGLYFVLYGKSEERKFA 435
Score = 121 bits (258), Expect = 3e-026
Identities = 56/86 (65%), Positives = 63/86 (73%)
Frame = +1 / +1
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 436 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 615
Query: 547 MHQICRANATPDATRPAYRMVKSSPP 624
+HQI ANA PDAT PA RMVKSS P
Sbjct: 616 IHQI*TANAIPDATIPA*RMVKSSQP 693
>gb|AV527105.1|AV527105 AV527105 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ28g05R 5', mRNA
sequence
Length = 519
Score = 124 bits (266), Expect = 2e-027
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV+Q
Sbjct: 310 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQ 489
Query: 509 PVQTVAVAVM 480
PVQT+ VA+M
Sbjct: 490 PVQTLVVAIM 519
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 92.3 bits (195), Expect(2) = 4e-026
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = -3 / -1
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLY 450
G+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 12580067 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFY 12579924
Score = 73.5 bits (154), Expect(3) = 9e-021
Identities = 33/51 (64%), Positives = 36/51 (70%)
Frame = +1 / +1
Query: 442 PPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQICRANATPDATRP 594
PP *+ SP EAM AT V TGW TA K+GPPLS+HQI ANA PDAT P
Sbjct: 12579916 PPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLSIHQI*TANAIPDATIP 12580068
Score = 47.8 bits (98), Expect(2) = 4e-026
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = -3 / -3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYA 594
++QFL IAAF E D W SG ELFTILYA
Sbjct: 12580257 IIQFLIIAAFCERDSQAWVFHSGWELFTILYA 12580162
Score = 37.7 bits (76), Expect(3) = 9e-021
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV 450
A F S+LLP++TK* P I TAP+I P+
Sbjct: 12579728 ANFLSSLLPYNTK*SPAMIKTAPIILPL 12579811
Score = 28.1 bits (55), Expect(3) = 9e-021
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 601 RMVKSSPPERTFHLLRSSSVKAAMARN 681
RMVKSS PE S S KAAM +N
Sbjct: 12580169 RMVKSSQPE*KTQA*ESLSQKAAMIKN 12580249
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence
Length = 129547
Score = 92.3 bits (195), Expect(2) = 4e-026
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = -3 / +3
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLY 450
G+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 120567 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFY 120710
Score = 47.8 bits (98), Expect(2) = 4e-026
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = -3 / +2
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYA 594
++QFL IAAF E D W SG ELFTILYA
Sbjct: 120377 IIQFLIIAAFCERDSQAWVFHSGWELFTILYA 120472
>gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete
sequence
Length = 100685
Score = 92.3 bits (195), Expect(2) = 4e-026
Identities = 34/48 (70%), Positives = 43/48 (89%)
Frame = -3 / +2
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLY 450
G+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 23060 GIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFY 23203
Score = 47.8 bits (98), Expect(2) = 4e-026
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYA 594
++QFL IAAF E D W SG ELFTILYA
Sbjct: 22870 IIQFLIIAAFCERDSQAWVFHSGWELFTILYA 22965
>emb|BX817624.1|CNS0AEM4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL33ZB10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1719
Score = 89.5 bits (189), Expect(2) = 6e-026
Identities = 39/69 (56%), Positives = 48/69 (69%)
Frame = -3 / +2
Query: 572 AFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLW 393
AFA+QI CIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y LYFVL+
Sbjct: 890 AFAVQI*CIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLY 1069
Query: 392 GKSAEKKGA 366
GKS E+K A
Sbjct: 1070 GKSEERKFA 1096
Score = 50.1 bits (103), Expect(2) = 6e-026
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGV 573
++Q L IAAF E++ W S +LFTILYAG+VASG+
Sbjct: 772 IIQCLIIAAFCEKNSQSWFFHSDWKLFTILYAGIVASGI 888
>gb|AY087537.1| Arabidopsis thaliana clone 36442 mRNA, complete sequence
Length = 1234
Score = 118 bits (253), Expect = 1e-025
Identities = 49/120 (40%), Positives = 72/120 (60%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QF I+A+ E DL RWK+ SGGEL+ +LY GLV S + FA+QI+ ++RGGPLF + +
Sbjct: 690 VIQFFGISAYFERDLERWKIISGGELYALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYL 869
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGARNLLQDQLAQGA 330
P+QT+ AV+A+ LG+ Y LY V+ GKS E + Q ++ A
Sbjct: 870 PLQTLIAAVLATLALGEHFYLGGLIGAILIMSGLYLVVMGKSWENQALCQQQQHMISSAA 1049
>ref|NM_115181.1| Arabidopsis thaliana unknown protein AT3G53210 mRNA, complete cds
Length = 1234
Score = 118 bits (253), Expect = 1e-025
Identities = 49/120 (40%), Positives = 72/120 (60%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QF I+A+ E DL RWK+ SGGEL+ +LY GLV S + FA+QI+ ++RGGPLF + +
Sbjct: 690 VIQFFGISAYFERDLERWKIISGGELYALLYTGLVGSAMVFAIQIYVVERGGPLFVSAYL 869
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGARNLLQDQLAQGA 330
P+QT+ AV+A+ LG+ Y LY V+ GKS E + Q ++ A
Sbjct: 870 PLQTLIAAVLATLALGEHFYLGGLIGAILIMSGLYLVVMGKSWENQALCQQQQHMISSAA 1049
>gb|AV785039.1|AV785039 AV785039 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-O04 3',
mRNA sequence
Length = 681
Score = 114 bits (244), Expect = 3e-024
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = -3 / -3
Query: 599 YAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXX 420
YAG+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 679 YAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLI 500
Query: 419 XXXLYFVLWGKSAEKKGA 366
LYFVL+GKS E+K A
Sbjct: 499 IAGLYFVLYGKSEERKFA 446
Score = 107 bits (229), Expect = 3e-022
Identities = 49/77 (63%), Positives = 56/77 (72%)
Frame = +1 / +3
Query: 367 APFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLS 546
A F S+LLP++TK* P I TAP+IPP *+ SP EAM AT V TGW TA K+GPPLS
Sbjct: 447 ANFLSSLLPYNTK*SPAMIKTAPIIPPK*NSSPNAIEAMIATTRV*TGW*TATKTGPPLS 626
Query: 547 MHQICRANATPDATRPA 597
+HQI ANA PDAT PA
Sbjct: 627 IHQI*TANAIPDATIPA 677
>gb|CB257406.1|CB257406 95-E012744-027-007-N24-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772N247Q 5-PRIME, mRNA sequence
Length = 626
Score = 103 bits (220), Expect(2) = 1e-023
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = -3 / +2
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAV 516
++QFL IAAF E D W SG ELFTILYAG+VASG+AFA+QIWCIDRGGP+F AV
Sbjct: 407 IIQFLIIAAFCERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAV 580
Score = 28.1 bits (55), Expect(2) = 1e-023
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3 / +1
Query: 536 GPLFTAVFQPVQTVAVAVMAS 474
G +QPVQT+ VA+MAS
Sbjct: 559 GSSLRCCYQPVQTLVVAIMAS 621
>gb|AV540435.1|AV540435 AV540435 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ150b12F 3', mRNA sequence
Length = 562
Score = 111 bits (238), Expect = 2e-023
Identities = 47/82 (57%), Positives = 57/82 (69%)
Frame = -3 / -3
Query: 617 ELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXX 438
ELFTILYAG++ASG+ LQ WCI + GP+F AVFQP+QT+ VA MA ILGDQLY+
Sbjct: 545 ELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGI 366
Query: 437 XXXXXXXXXLYFVLWGKSAEKK 372
LY VLWGK+ E+K
Sbjct: 365 VGAVFIMLGLYLVLWGKNEERK 300
>emb|BX824196.1|CNS0A6W7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH29ZF10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1232
Score = 110 bits (235), Expect = 4e-023
Identities = 49/106 (46%), Positives = 61/106 (57%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
L+QFL IA F E DL+ W + S ELFTILYAG++ASG+ LQ WCI + GP F F
Sbjct: 702 LIQFLVIALFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPAFCRCFP 881
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
+ +ILGDQLY+ LY VLWGK+ E+K
Sbjct: 882 ASPDTSCCCDGVSILGDQLYSGGIVGAVFIMLALYLVLWGKNEERK 1019
>dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8
Length = 76816
Score = 77.1 bits (162), Expect(2) = 2e-021
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = -3 / -1
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYT 447
G++ASG+ LQ WCI + GP+F AVFQP+QT+ VA MA ILGDQLY+
Sbjct: 63904 GIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYS 63758
Score = 46.9 bits (96), Expect(2) = 2e-021
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -3 / -3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYA 594
L+QFL IA F E DL+ W + S ELFTILYA
Sbjct: 64094 LIQFLVIALFVETDLNNWIIVSWEELFTILYA 63999
>gb|BP834501.1|BP834501 BP834501 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-10-I01 5',
mRNA sequence
Length = 377
Score = 63.4 bits (132), Expect(2) = 9e-021
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = -3 / +3
Query: 548 IDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKG 369
+ G LF AV+QPVQT+ VA+MAS LG++ Y LYFVL+GKS E+K
Sbjct: 57 LTEGVQLFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKF 236
Query: 368 A 366
A
Sbjct: 237 A 239
Score = 58.8 bits (122), Expect(2) = 9e-021
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = -3 / +2
Query: 602 LYAGLVASGVAFALQIWCIDRGGP 531
LYAG+VASG+AFA+QIWCIDRGGP
Sbjct: 2 LYAGIVASGIAFAVQIWCIDRGGP 73
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,260,570,968
Number of Sequences: 1013581
Number of extensions: 15796794
Number of successful extensions: 196911
Number of sequences better than 1.0e-020: 24
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 43018600290
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)