TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosom... 108 2e-032
gb|AY085457.1| Arabidopsis thaliana clone 15239 mRNA, compl... 108 2e-032
ref|NM_125442.2| Arabidopsis thaliana FLA12 AT5G60490 (FLA1... 108 2e-032
gb|AF410335.1|AF410335 Arabidopsis thaliana AT5g60490/muf9_... 108 2e-032
gb|BT000530.1| Arabidopsis thaliana arabinogalactan-like pr... 108 2e-032
gb|AV824213.1|AV824213 AV824213 RAFL6 Arabidopsis thaliana ... 108 2e-032
emb|AL163002.1|ATF15A17 Arabidopsis thaliana DNA chromosome... 119 4e-029
dbj|AB005240.1| Arabidopsis thaliana genomic DNA, chromosom... 119 4e-029
ref|NM_120394.2| Arabidopsis thaliana heat shock protein bi... 119 4e-029
gb|AF360183.1| Arabidopsis thaliana putative arabinogalacta... 119 4e-029
gb|AY085388.1| Arabidopsis thaliana clone 14950 mRNA, compl... 119 4e-029
ref|NM_120395.1| Arabidopsis thaliana FLA11 AT5G03170 (FLA1... 119 4e-029
gb|AY039999.1| Arabidopsis thaliana putative arabinogalacta... 119 4e-029
emb|CQ805118.1| Sequence 1529 from Patent WO2004035798 119 4e-029
gb|CB260954.1|CB260954 47-E9518-012-003-M18-T7R MPIZ-ADIS-0... 108 4e-029
gb|AV558969.1|AV558969 AV558969 Arabidopsis thaliana green ... 115 6e-028
gb|AV827521.1|AV827521 AV827521 RAFL9 Arabidopsis thaliana ... 119 1e-025
gb|AV553181.1|AV553181 AV553181 Arabidopsis thaliana roots ... 119 1e-025
gb|AV553525.1|AV553525 AV553525 Arabidopsis thaliana roots ... 119 1e-025
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 119 1e-025
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 119 1e-025
gb|T76135.1|T76135 10913 Lambda-PRL2 Arabidopsis thaliana c... 108 2e-022
>dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9
Length = 77298
Score = 108 bits (231), Expect(3) = 2e-032
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / -2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 46949 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 46770
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 46769 GDSADGHFPLNVT 46731
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / -2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 47048 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 46956
Score = 29.0 bits (57), Expect(3) = 2e-032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / -2
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
+Y+ +L VYQV KVLLP ++
Sbjct: 46670 VYSDGQLAVYQVDKVLLPQQVF 46605
>gb|AY085457.1| Arabidopsis thaliana clone 15239 mRNA, complete sequence
Length = 974
Score = 108 bits (231), Expect(3) = 2e-032
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +3
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 252 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 431
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 432 GDSADGHFPLNVT 470
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +3
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 153 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 245
Score = 29.0 bits (57), Expect(3) = 2e-032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
+Y+ +L VYQV KVLLP ++
Sbjct: 531 VYSDGQLAVYQVDKVLLPQQVF 596
>ref|NM_125442.2| Arabidopsis thaliana FLA12 AT5G60490 (FLA12) mRNA, complete cds
Length = 976
Score = 108 bits (231), Expect(3) = 2e-032
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 254 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 433
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 434 GDSADGHFPLNVT 472
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 155 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 247
Score = 29.0 bits (57), Expect(3) = 2e-032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / +2
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
+Y+ +L VYQV KVLLP ++
Sbjct: 533 VYSDGQLAVYQVDKVLLPQQVF 598
>gb|AF410335.1|AF410335 Arabidopsis thaliana AT5g60490/muf9_140 mRNA, complete cds
Length = 944
Score = 108 bits (231), Expect(3) = 2e-032
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 229 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 408
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 409 GDSADGHFPLNVT 447
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +1
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 130 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 222
Score = 29.0 bits (57), Expect(3) = 2e-032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
+Y+ +L VYQV KVLLP ++
Sbjct: 508 VYSDGQLAVYQVDKVLLPQQVF 573
>gb|BT000530.1| Arabidopsis thaliana arabinogalactan-like protein
(At5g60490/muf9_140) mRNA, complete cds
Length = 720
Score = 108 bits (231), Expect(3) = 2e-032
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 217 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 396
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 397 GDSADGHFPLNVT 435
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +1
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 118 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 210
Score = 29.0 bits (57), Expect(3) = 2e-032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
+Y+ +L VYQV KVLLP ++
Sbjct: 496 VYSDGQLAVYQVDKVLLPQQVF 561
>gb|AV824213.1|AV824213 AV824213 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-A10 5',
mRNA sequence
Length = 681
Score = 108 bits (231), Expect(3) = 2e-032
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 230 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 409
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 410 GDSADGHFPLNVT 448
Score = 41.8 bits (85), Expect(3) = 2e-032
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 131 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 223
Score = 29.0 bits (57), Expect(3) = 2e-032
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1 / +2
Query: 565 LYAGDRLVVYQVSKVLLPWALY 630
+Y+ +L VYQV KVLLP ++
Sbjct: 509 VYSDGQLAVYQVDKVLLPQQVF 574
>emb|AL163002.1|ATF15A17 Arabidopsis thaliana DNA chromosome 5, BAC clone F15A17 (ESSA project)
Length = 99008
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / -2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 56494 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 56315
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 56314 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 56171
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / -2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 56170 ANSVYSDKQLAVYQVDQVLLPLAMF 56096
>dbj|AB005240.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16
Length = 80770
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / -2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 27633 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 27454
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 27453 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 27310
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / -2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 27309 ANSVYSDKQLAVYQVDQVLLPLAMF 27235
>ref|NM_120394.2| Arabidopsis thaliana heat shock protein binding / unfolded protein
binding AT5G03160 mRNA, complete cds
Length = 2599
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / -2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 2424 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 2245
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 2244 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 2101
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / -2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 2100 ANSVYSDKQLAVYQVDQVLLPLAMF 2026
>gb|AF360183.1| Arabidopsis thaliana putative arabinogalactan protein (At5g03170)
mRNA, complete cds
Length = 931
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 176 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 355
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 356 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 499
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 500 ANSVYSDKQLAVYQVDQVLLPLAMF 574
>gb|AY085388.1| Arabidopsis thaliana clone 14950 mRNA, complete sequence
Length = 882
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 176 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 355
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 356 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 499
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 500 ANSVYSDKQLAVYQVDQVLLPLAMF 574
>ref|NM_120395.1| Arabidopsis thaliana FLA11 AT5G03170 (FLA11) mRNA, complete cds
Length = 882
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 176 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 355
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 356 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 499
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 500 ANSVYSDKQLAVYQVDQVLLPLAMF 574
>gb|AY039999.1| Arabidopsis thaliana putative arabinogalactan protein (At5g03170)
mRNA, complete cds
Length = 741
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +1
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 157 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 336
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 337 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 480
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 481 ANSVYSDKQLAVYQVDQVLLPLAMF 555
>emb|CQ805118.1| Sequence 1529 from Patent WO2004035798
Length = 741
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +1
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 157 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 336
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 337 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 480
Score = 31.3 bits (62), Expect(2) = 4e-029
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 481 ANSVYSDKQLAVYQVDQVLLPLAMF 555
>gb|CB260954.1|CB260954 47-E9518-012-003-M18-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769M183Q 5-PRIME, mRNA sequence
Length = 535
Score = 108 bits (231), Expect(2) = 4e-029
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +2
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 224 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 403
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 404 GDSADGHFPLNVT 442
Score = 41.8 bits (85), Expect(2) = 4e-029
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +2
Query: 178 ITAILSKAGQFTKFLQLLQSTREAEQITNQL 270
+T IL KAGQFT F++LL+ST A Q+ QL
Sbjct: 125 VTKILEKAGQFTVFIRLLKSTGVANQLYGQL 217
>gb|AV558969.1|AV558969 AV558969 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ108h10F 3', mRNA sequence
Length = 352
Score = 115 bits (245), Expect(2) = 6e-028
Identities = 49/87 (56%), Positives = 60/87 (68%)
Frame = +1 / +2
Query: 292 GLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQAGDT 471
GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+ + Q +TVSNPLRTQAGD
Sbjct: 5 GLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDG 184
Query: 472 GRGKYPLNLTADXXXXXXXXXXXXATL 552
GK+PLN+T+ AT+
Sbjct: 185 QNGKFPLNITSSGNQVNITTGVVSATV 265
Score = 31.3 bits (62), Expect(2) = 6e-028
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1 / +2
Query: 556 ATPLYAGDRLVVYQVSKVLLPWALY 630
A +Y+ +L VYQV +VLLP A++
Sbjct: 266 ANSVYSDKQLAVYQVDQVLLPLAMF 340
>gb|AV827521.1|AV827521 AV827521 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-16-G21 5',
mRNA sequence
Length = 590
Score = 119 bits (254), Expect = 1e-025
Identities = 54/108 (50%), Positives = 68/108 (62%)
Frame = +1 / +3
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 177 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 356
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 357 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVXSATV 500
>gb|AV553181.1|AV553181 AV553181 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ56a06R 5', mRNA sequence
Length = 466
Score = 119 bits (254), Expect = 1e-025
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +1
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 112 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 291
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 292 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 435
>gb|AV553525.1|AV553525 AV553525 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ64h05R 5', mRNA sequence
Length = 494
Score = 119 bits (254), Expect = 1e-025
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / +2
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 131 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 310
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 311 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 454
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 119 bits (254), Expect = 1e-025
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / -3
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 753038 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 752859
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 752858 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 752715
Score = 108 bits (231), Expect = 2e-022
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / -3
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 21611762 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 21611583
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 21611582 GDSADGHFPLNVT 21611544
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 119 bits (254), Expect = 1e-025
Identities = 53/108 (49%), Positives = 67/108 (62%)
Frame = +1 / -3
Query: 229 LQSTREAEQITNQLKGKPSNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSA 408
L + +A N S+ GLTVFAP D+AF++L +GTLNSLSDQQK LVQFHV+
Sbjct: 753481 LLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPT 753302
Query: 409 ALPAAQLETVSNPLRTQAGDTGRGKYPLNLTADXXXXXXXXXXXXATL 552
+ Q +TVSNPLRTQAGD GK+PLN+T+ AT+
Sbjct: 753301 LITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATV 753158
Score = 108 bits (231), Expect = 2e-022
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / -3
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 24343675 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 24343496
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 24343495 GDSADGHFPLNVT 24343457
>gb|T76135.1|T76135 10913 Lambda-PRL2 Arabidopsis thaliana cDNA clone 145O5T7, mRNA
sequence
Length = 477
Score = 108 bits (231), Expect = 2e-022
Identities = 40/73 (54%), Positives = 59/73 (80%)
Frame = +1 / +1
Query: 283 SNGGLTVFAPPDSAFSALPAGTLNSLSDQQKTSLVQFHVVSAALPAAQLETVSNPLRTQA 462
S+ G+T+FAP DS+F+ L AGTLNSL+D+Q+ L+QFHV+ + + ++ +T+SNPLRTQA
Sbjct: 4 SDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQA 183
Query: 463 GDTGRGKYPLNLT 501
GD+ G +PLN+T
Sbjct: 184 GDSADGHFPLNVT 222
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 545,850,591
Number of Sequences: 1013581
Number of extensions: 4430054
Number of successful extensions: 40305
Number of sequences better than 1.0e-020: 27
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 47766632276
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)