TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF479279.1| Arabidopsis thaliana SEC6 (SEC6) mRNA, compl... 291 2e-077
gb|AY046014.1| Arabidopsis thaliana unknown protein (At1g71... 291 2e-077
gb|AY133819.1| Arabidopsis thaliana clone U09918 unknown pr... 291 2e-077
ref|NM_105840.2| Arabidopsis thaliana unknown protein AT1G7... 291 2e-077
gb|AV783152.1|AV783152 AV783152 RAFL5 Arabidopsis thaliana ... 268 2e-070
gb|AC012654.2|F14O23 Arabidopsis thaliana chromosome 1 BAC ... 85 1e-051
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 85 2e-043
gb|AA712174.1|AA712174 31902 Lambda-PRL2 Arabidopsis thalia... 143 4e-034
>gb|AF479279.1| Arabidopsis thaliana SEC6 (SEC6) mRNA, complete cds
Length = 2728
Score = 291 bits (629), Expect = 2e-077
Identities = 116/145 (80%), Positives = 137/145 (94%)
Frame = -3 / +2
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 1970 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 2149
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 2150 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 2329
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG 258
+LVDGNP K+GFVF ++KCLTA KG
Sbjct: 2330 TLVDGNPPKTGFVFPRVKCLTASKG 2404
Score = 133 bits (285), Expect = 6e-030
Identities = 71/145 (48%), Positives = 72/145 (49%)
Frame = +1 / -2
Query: 259 PFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL*KTSGGQS 438
P AVKH L NT P F GLPSTS FSYISLHSCTTS SF GMPSR TS TS GQS
Sbjct: 2403 PLEAVKHLTLGNTNPVFGGLPSTSVFSYISLHSCTTSFVSFRGMPSRRLTSFSTTSAGQS 2224
Query: 439 G*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXXXXXXXXXX 618
G CS I V LLST L+
Sbjct: 2223 GWCSRIFEYTSVNASRLSADASSLRSLIILILLSTLDALIYSLKKSMRTSSSSLIRSIVS 2044
Query: 619 XFM*FF*ERRWST*TTIVSSMQAST 693
M*FF* RRWST*TT VSS AST
Sbjct: 2043 SLM*FF*VRRWST*TTTVSSKHAST 1969
Score = 126 bits (269), Expect = 9e-028
Identities = 62/133 (46%), Positives = 83/133 (62%)
Frame = +3 / -1
Query: 276 ALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHKLIKNLRRAIRLMFQY 455
AL ++K+ L R+ I++ VL+YLFA LY+L L W AF +KL+ +L RA+RL+
Sbjct: 2386 ALDSREYKSCLWRITIYQCVLIYLFALLYHLFCVLPWYAFTQTNKLLYDLGRAVRLVL*N 2207
Query: 456 ISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVF 635
I V+E K I TL I SA +F + P+EIH++LFI*PHP FF VVF
Sbjct: 2206 IRVHECKCI*TLCRCKFSQIAHYSDSALHFRCTYILPKEIHENLFI*PHPFNSFFLDVVF 2027
Query: 636 LRKEMVNIDHNCF 674
L EMVNID++CF
Sbjct: 2026 LS*EMVNIDNDCF 1988
>gb|AY046014.1| Arabidopsis thaliana unknown protein (At1g71820) mRNA, complete cds
Length = 2798
Score = 291 bits (629), Expect = 2e-077
Identities = 116/145 (80%), Positives = 137/145 (94%)
Frame = -3 / +3
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 2070 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 2249
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 2250 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 2429
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG 258
+LVDGNP K+GFVF ++KCLTA KG
Sbjct: 2430 TLVDGNPPKTGFVFPRVKCLTASKG 2504
Score = 133 bits (285), Expect = 6e-030
Identities = 71/145 (48%), Positives = 72/145 (49%)
Frame = +1 / -2
Query: 259 PFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL*KTSGGQS 438
P AVKH L NT P F GLPSTS FSYISLHSCTTS SF GMPSR TS TS GQS
Sbjct: 2503 PLEAVKHLTLGNTNPVFGGLPSTSVFSYISLHSCTTSFVSFRGMPSRRLTSFSTTSAGQS 2324
Query: 439 G*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXXXXXXXXXX 618
G CS I V LLST L+
Sbjct: 2323 GWCSRIFEYTSVNASRLSADASSLRSLIILILLSTLDALIYSLKKSMRTSSSSLIRSIVS 2144
Query: 619 XFM*FF*ERRWST*TTIVSSMQAST 693
M*FF* RRWST*TT VSS AST
Sbjct: 2143 SLM*FF*VRRWST*TTTVSSKHAST 2069
Score = 126 bits (269), Expect = 9e-028
Identities = 62/133 (46%), Positives = 83/133 (62%)
Frame = +3 / -1
Query: 276 ALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHKLIKNLRRAIRLMFQY 455
AL ++K+ L R+ I++ VL+YLFA LY+L L W AF +KL+ +L RA+RL+
Sbjct: 2486 ALDSREYKSCLWRITIYQCVLIYLFALLYHLFCVLPWYAFTQTNKLLYDLGRAVRLVL*N 2307
Query: 456 ISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVF 635
I V+E K I TL I SA +F + P+EIH++LFI*PHP FF VVF
Sbjct: 2306 IRVHECKCI*TLCRCKFSQIAHYSDSALHFRCTYILPKEIHENLFI*PHPFNSFFLDVVF 2127
Query: 636 LRKEMVNIDHNCF 674
L EMVNID++CF
Sbjct: 2126 LS*EMVNIDNDCF 2088
>gb|AY133819.1| Arabidopsis thaliana clone U09918 unknown protein (At1g71820) mRNA,
complete cds
Length = 2290
Score = 291 bits (629), Expect = 2e-077
Identities = 116/145 (80%), Positives = 137/145 (94%)
Frame = -3 / +1
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 1801 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 1980
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 1981 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 2160
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG 258
+LVDGNP K+GFVF ++KCLTA KG
Sbjct: 2161 TLVDGNPPKTGFVFPRVKCLTASKG 2235
Score = 133 bits (285), Expect = 6e-030
Identities = 71/145 (48%), Positives = 72/145 (49%)
Frame = +1 / -3
Query: 259 PFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL*KTSGGQS 438
P AVKH L NT P F GLPSTS FSYISLHSCTTS SF GMPSR TS TS GQS
Sbjct: 2234 PLEAVKHLTLGNTNPVFGGLPSTSVFSYISLHSCTTSFVSFRGMPSRRLTSFSTTSAGQS 2055
Query: 439 G*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXXXXXXXXXX 618
G CS I V LLST L+
Sbjct: 2054 GWCSRIFEYTSVNASRLSADASSLRSLIILILLSTLDALIYSLKKSMRTSSSSLIRSIVS 1875
Query: 619 XFM*FF*ERRWST*TTIVSSMQAST 693
M*FF* RRWST*TT VSS AST
Sbjct: 1874 SLM*FF*VRRWST*TTTVSSKHAST 1800
Score = 126 bits (269), Expect = 9e-028
Identities = 62/133 (46%), Positives = 83/133 (62%)
Frame = +3 / -2
Query: 276 ALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHKLIKNLRRAIRLMFQY 455
AL ++K+ L R+ I++ VL+YLFA LY+L L W AF +KL+ +L RA+RL+
Sbjct: 2217 ALDSREYKSCLWRITIYQCVLIYLFALLYHLFCVLPWYAFTQTNKLLYDLGRAVRLVL*N 2038
Query: 456 ISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVF 635
I V+E K I TL I SA +F + P+EIH++LFI*PHP FF VVF
Sbjct: 2037 IRVHECKCI*TLCRCKFSQIAHYSDSALHFRCTYILPKEIHENLFI*PHPFNSFFLDVVF 1858
Query: 636 LRKEMVNIDHNCF 674
L EMVNID++CF
Sbjct: 1857 LS*EMVNIDNDCF 1819
>ref|NM_105840.2| Arabidopsis thaliana unknown protein AT1G71820 mRNA, complete cds
Length = 2904
Score = 291 bits (629), Expect = 2e-077
Identities = 116/145 (80%), Positives = 137/145 (94%)
Frame = -3 / +1
Query: 692 VEACIEETIVVYVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILAD 513
VEAC+EET+VVYVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D
Sbjct: 2083 VEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSD 2262
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 2263 LRELASAESLDAFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 2442
Query: 332 SLVDGNPQKSGFVFGKLKCLTAKKG 258
+LVDGNP K+GFVF ++KCLTA KG
Sbjct: 2443 TLVDGNPPKTGFVFPRVKCLTASKG 2517
Score = 133 bits (285), Expect = 6e-030
Identities = 71/145 (48%), Positives = 72/145 (49%)
Frame = +1 / -2
Query: 259 PFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL*KTSGGQS 438
P AVKH L NT P F GLPSTS FSYISLHSCTTS SF GMPSR TS TS GQS
Sbjct: 2516 PLEAVKHLTLGNTNPVFGGLPSTSVFSYISLHSCTTSFVSFRGMPSRRLTSFSTTSAGQS 2337
Query: 439 G*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXXXXXXXXXX 618
G CS I V LLST L+
Sbjct: 2336 GWCSRIFEYTSVNASRLSADASSLRSLIILILLSTLDALIYSLKKSMRTSSSSLIRSIVS 2157
Query: 619 XFM*FF*ERRWST*TTIVSSMQAST 693
M*FF* RRWST*TT VSS AST
Sbjct: 2156 SLM*FF*VRRWST*TTTVSSKHAST 2082
Score = 126 bits (269), Expect = 9e-028
Identities = 62/133 (46%), Positives = 83/133 (62%)
Frame = +3 / -1
Query: 276 ALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHKLIKNLRRAIRLMFQY 455
AL ++K+ L R+ I++ VL+YLFA LY+L L W AF +KL+ +L RA+RL+
Sbjct: 2499 ALDSREYKSCLWRITIYQCVLIYLFALLYHLFCVLPWYAFTQTNKLLYDLGRAVRLVL*N 2320
Query: 456 ISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVF 635
I V+E K I TL I SA +F + P+EIH++LFI*PHP FF VVF
Sbjct: 2319 IRVHECKCI*TLCRCKFSQIAHYSDSALHFRCTYILPKEIHENLFI*PHPFNSFFLDVVF 2140
Query: 636 LRKEMVNIDHNCF 674
L EMVNID++CF
Sbjct: 2139 LS*EMVNIDNDCF 2101
>gb|AV783152.1|AV783152 AV783152 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-A10 3',
mRNA sequence
Length = 681
Score = 268 bits (579), Expect = 2e-070
Identities = 107/134 (79%), Positives = 126/134 (94%)
Frame = -3 / -3
Query: 659 YVDHLLSQKNYIKEETIERMRLDEEVLMDFFREHINVTKVESRVRILADMRELASAESLD 480
YVDHLL+QKNYIKEETIERMRLDEEVLMDFFRE+I+ +KVESR+RI++D+RELASAESLD
Sbjct: 679 YVDHLLTQKNYIKEETIERMRLDEEVLMDFFREYISASKVESRIRIMSDLRELASAESLD 500
Query: 479 SFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYENSLVDGNPQKSG 300
+FTL+Y+NILEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN+LVDGNP K+G
Sbjct: 499 AFTLVYSNILEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYENTLVDGNPPKTG 320
Query: 299 FVFGKLKCLTAKKG 258
FVF ++KCLTA KG
Sbjct: 319 FVFPRVKCLTASKG 278
Score = 118 bits (252), Expect = 2e-025
Identities = 63/134 (47%), Positives = 64/134 (47%)
Frame = +1 / +3
Query: 259 PFFAVKHFNLPNTKPDF*GLPSTSEFSYISLHSCTTSLASFFGMPSRIATSL*KTSGGQS 438
P AVKH L NT P F GLPSTS FSYISLHSCTTS SF GMPSR TS TS GQS
Sbjct: 279 PLEAVKHLTLGNTNPVFGGLPSTSVFSYISLHSCTTSFVSFRGMPSRRLTSFSTTSAGQS 458
Query: 439 G*CSSILV*MRVXXXXXXXXXXXXXXXXXXTLLSTFVTLMCXXXXXXXXXXXXXXXXXXX 618
G CS I V LLST L+
Sbjct: 459 GWCSRIFEYTSVNASRLSADASSLRSLIILILLSTLDALIYSLKKSMRTSSSSLIRSIVS 638
Query: 619 XFM*FF*ERRWST* 660
M*FF* RRWST*
Sbjct: 639 SLM*FF*VRRWST* 680
Score = 115 bits (246), Expect = 1e-024
Identities = 59/128 (46%), Positives = 78/128 (60%)
Frame = +3 / +2
Query: 276 ALQFAKHKTGLLRVAIHKRVLVYLFAFLYNLLGFLFWNAFPHCHKLIKNLRRAIRLMFQY 455
AL ++K+ L R+ I++ VL+YLFA LY+L L W AF +KL+ +L RA+RL+
Sbjct: 296 ALDSREYKSCLWRITIYQCVLIYLFALLYHLFCVLPWYAFTQTNKLLYDLGRAVRLVL*N 475
Query: 456 ISVNESKAIQTLS*S*LPHICQNPHSAFNFCHVDVFPEEIHKHLFI*PHPLYRFFFYVVF 635
I V+E K I TL I SA +F + P+EIH++LFI*PHP FF VVF
Sbjct: 476 IRVHECKCI*TLCRCKFSQIAHYSDSALHFRCTYILPKEIHENLFI*PHPFNSFFLDVVF 655
Query: 636 LRKEMVNI 659
L EMVNI
Sbjct: 656 LS*EMVNI 679
>gb|AC012654.2|F14O23 Arabidopsis thaliana chromosome 1 BAC F14O23 sequence, complete
sequence
Length = 98471
Score = 85.4 bits (180), Expect(5) = 1e-051
Identities = 32/42 (76%), Positives = 40/42 (95%)
Frame = -3 / +2
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCPPEV 420
KVESR+RI++D+RELASAESLD+FTL+Y+NILEHQPDCP +
Sbjct: 75476 KVESRIRIMSDLRELASAESLDAFTLVYSNILEHQPDCPVNI 75601
Score = 79.0 bits (166), Expect(5) = 1e-051
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -3 / +2
Query: 371 KEVVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKG 258
K+VVQECKEIYEN+LVDGNP K+GFVF ++KCLTA KG
Sbjct: 75869 KQVVQECKEIYENTLVDGNPPKTGFVFPRVKCLTASKG 75982
Score = 67.0 bits (140), Expect(5) = 1e-051
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -3 / +3
Query: 638 QKNYIKEETIERMRLDEEVLMDFFREHINVT 546
QKNYIKEETIERMRLDEEVLMDFFRE+I+ +
Sbjct: 75288 QKNYIKEETIERMRLDEEVLMDFFREYISAS 75380
Score = 43.7 bits (89), Expect(5) = 1e-051
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = -3 / +1
Query: 692 VEACIEETIVVYVDHLLSQ 636
VEAC+EET+VVYVDHLL+Q
Sbjct: 75142 VEACLEETVVVYVDHLLTQ 75198
Score = 35.9 bits (72), Expect(5) = 1e-051
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -3 / +3
Query: 425 EVFYKLVAMREGIPKKEAKEV 363
EV KLV++REGIP+K+ KEV
Sbjct: 75675 EVVEKLVSLREGIPRKDTKEV 75737
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 85.4 bits (180), Expect(5) = 2e-043
Identities = 32/42 (76%), Positives = 40/42 (95%)
Frame = -3 / +1
Query: 545 KVESRVRILADMRELASAESLDSFTLIYTNILEHQPDCPPEV 420
KVESR+RI++D+RELASAESLD+FTL+Y+NILEHQPDCP +
Sbjct: 11257537 KVESRIRIMSDLRELASAESLDAFTLVYSNILEHQPDCPVNI 11257662
Score = 79.0 bits (166), Expect(5) = 2e-043
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = -3 / +1
Query: 371 KEVVQECKEIYENSLVDGNPQKSGFVFGKLKCLTAKKG 258
K+VVQECKEIYEN+LVDGNP K+GFVF ++KCLTA KG
Sbjct: 11257930 KQVVQECKEIYENTLVDGNPPKTGFVFPRVKCLTASKG 11258043
Score = 67.0 bits (140), Expect(5) = 2e-043
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -3 / +2
Query: 638 QKNYIKEETIERMRLDEEVLMDFFREHINVT 546
QKNYIKEETIERMRLDEEVLMDFFRE+I+ +
Sbjct: 11257349 QKNYIKEETIERMRLDEEVLMDFFREYISAS 11257441
Score = 43.7 bits (89), Expect(5) = 2e-043
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = -3 / +3
Query: 692 VEACIEETIVVYVDHLLSQ 636
VEAC+EET+VVYVDHLL+Q
Sbjct: 11257203 VEACLEETVVVYVDHLLTQ 11257259
Score = 35.9 bits (72), Expect(5) = 2e-043
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -3 / +2
Query: 425 EVFYKLVAMREGIPKKEAKEV 363
EV KLV++REGIP+K+ KEV
Sbjct: 11257736 EVVEKLVSLREGIPRKDTKEV 11257798
>gb|AA712174.1|AA712174 31902 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182E1T7, mRNA
sequence
Length = 335
Score = 143 bits (307), Expect(2) = 4e-034
Identities = 56/72 (77%), Positives = 66/72 (91%)
Frame = -3 / +2
Query: 512 MRELASAESLDSFTLIYTNILEHQPDCPPEVFYKLVAMREGIPKKEAKEVVQECKEIYEN 333
+RELASAESLD+FTL+Y+N LEHQPDCP EV KLV++REGIP+K+ KEVVQECKEIYEN
Sbjct: 2 LRELASAESLDAFTLVYSNXLEHQPDCPAEVVEKLVSLREGIPRKDTKEVVQECKEIYEN 181
Query: 332 SLVDGNPQKSGF 297
+LVDGNP K+GF
Sbjct: 182 TLVDGNPPKTGF 217
Score = 23.5 bits (45), Expect(2) = 4e-034
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 293 FGKLKCLTAKKG 258
F ++KCLTA KG
Sbjct: 223 FPRVKCLTASKG 258
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,544,131,738
Number of Sequences: 1013581
Number of extensions: 22605897
Number of successful extensions: 203061
Number of sequences better than 1.0e-020: 10
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 45058214982
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)