TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC005313.3| Arabidopsis thaliana chromosome 2 clone T18E... 130 3e-029
ref|NM_126372.1| Arabidopsis thaliana FUT2; fucosyltransfer... 130 3e-029
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 130 3e-029
gb|BP780259.1|BP780259 BP780259 RAFL7 Arabidopsis thaliana ... 129 4e-029
gb|BP794409.1|BP794409 BP794409 RAFL7 Arabidopsis thaliana ... 129 4e-029
gb|CK121533.1|CK121533 202l06.p1 AtM1 Arabidopsis thaliana ... 129 6e-029
gb|AF154111.1|AF154111 Arabidopsis thaliana xyloglucan fuco... 129 6e-029
gb|AY139993.1| Arabidopsis thaliana unknown protein mRNA, c... 129 6e-029
gb|BT002477.1| Arabidopsis thaliana unknown protein (At2g03... 129 6e-029
gb|BT003401.1| Arabidopsis thaliana unknown protein mRNA, c... 129 6e-029
ref|NM_126373.2| Arabidopsis thaliana FT1 (FUCOSYLTRANSFERA... 129 6e-029
gb|AV805720.1|AV805720 AV805720 RAFL9 Arabidopsis thaliana ... 129 6e-029
gb|BP571184.1|BP571184 BP571184 RAFL14 Arabidopsis thaliana... 129 6e-029
gb|AA605483.1|AA605483 30519 Lambda-PRL2 Arabidopsis thalia... 126 4e-028
emb|BX813608.1|CNS0ACCF Arabidopsis thaliana Full-length cD... 125 7e-028
gb|AV807820.1|AV807820 AV807820 RAFL9 Arabidopsis thaliana ... 71 1e-021
>gb|AC005313.3| Arabidopsis thaliana chromosome 2 clone T18E12 map CIC11A04, complete
sequence
Length = 91318
Score = 130 bits (278), Expect = 3e-029
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = +3 / +3
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL+ WI+ K EN P+PPC RAMS +PCFH P+YDCKA+K TD G VVP+VRHCED+S
Sbjct: 45036 GLRAWILYKQENQTNPNPPCGRAMSPDPCFHAPPYYDCKAKKGTDTGNVVPHVRHCEDIS 45215
Query: 192 WGLKIVD 212
WGLK+VD
Sbjct: 45216 WGLKLVD 45236
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 42979 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 43158
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 43159 WGLKLV 43176
>ref|NM_126372.1| Arabidopsis thaliana FUT2; fucosyltransferase/ transferase,
transferring glycosyl groups AT2G03210 (FUT2) mRNA,
complete cds
Length = 1620
Score = 130 bits (278), Expect = 3e-029
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = +3 / +1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL+ WI+ K EN P+PPC RAMS +PCFH P+YDCKA+K TD G VVP+VRHCED+S
Sbjct: 1411 GLRAWILYKQENQTNPNPPCGRAMSPDPCFHAPPYYDCKAKKGTDTGNVVPHVRHCEDIS 1590
Query: 192 WGLKIVD 212
WGLK+VD
Sbjct: 1591 WGLKLVD 1611
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 130 bits (278), Expect = 3e-029
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = +3 / -1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL+ WI+ K EN P+PPC RAMS +PCFH P+YDCKA+K TD G VVP+VRHCED+S
Sbjct: 968541 GLRAWILYKQENQTNPNPPCGRAMSPDPCFHAPPYYDCKAKKGTDTGNVVPHVRHCEDIS 968362
Query: 192 WGLKIVD 212
WGLK+VD
Sbjct: 968361 WGLKLVD 968341
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / -2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 970598 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 970419
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 970418 WGLKLV 970401
>gb|BP780259.1|BP780259 BP780259 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-72-B12 3',
mRNA sequence
Length = 413
Score = 129 bits (277), Expect = 4e-029
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = +3 / -2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCEDVS
Sbjct: 289 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDVS 110
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 109 WGLKLV 92
>gb|BP794409.1|BP794409 BP794409 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-60-G14 3',
mRNA sequence
Length = 428
Score = 129 bits (277), Expect = 4e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / -1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 287 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 108
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 107 WGLKVV 90
>gb|CK121533.1|CK121533 202l06.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011L06202
5-PRIME, mRNA sequence
Length = 806
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +3
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 555 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 734
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 735 WGLKLV 752
>gb|AF154111.1|AF154111 Arabidopsis thaliana xyloglucan fucosyltransferase (FT1) mRNA,
complete cds
Length = 1768
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 1495 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 1674
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 1675 WGLKLV 1692
>gb|AY139993.1| Arabidopsis thaliana unknown protein mRNA, complete cds
Length = 1786
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 1498 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 1677
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 1678 WGLKLV 1695
>gb|BT002477.1| Arabidopsis thaliana unknown protein (At2g03220) mRNA, complete cds
Length = 1772
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +3
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 1488 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 1667
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 1668 WGLKLV 1685
>gb|BT003401.1| Arabidopsis thaliana unknown protein mRNA, complete cds
Length = 1706
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 1477 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 1656
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 1657 WGLKLV 1674
>ref|NM_126373.2| Arabidopsis thaliana FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/
transferase, transferring glycosyl groups AT2G03220 (FT1)
mRNA, complete cds
Length = 1873
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / +1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 1531 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 1710
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 1711 WGLKLV 1728
>gb|AV805720.1|AV805720 AV805720 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-43-P18 3',
mRNA sequence
Length = 416
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / -2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 286 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 107
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 106 WGLKLV 89
>gb|BP571184.1|BP571184 BP571184 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-75-E16 3',
mRNA sequence
Length = 458
Score = 129 bits (276), Expect = 6e-029
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +3 / -1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 287 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 108
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 107 WGLKLV 90
>gb|AA605483.1|AA605483 30519 Lambda-PRL2 Arabidopsis thaliana cDNA clone 191A6XP 3', mRNA
sequence
Length = 507
Score = 126 bits (270), Expect = 4e-028
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = +3 / +2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL PWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 221 GLXPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDXGTLVPHVRHCEDIS 400
Query: 192 WGLKIV 209
WGLK+V
Sbjct: 401 WGLKLV 418
>emb|BX813608.1|CNS0ACCF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB27ZG02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 840
Score = 125 bits (268), Expect = 7e-028
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = +3 / -2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GLKPWI+ + EN TPDP C RAMS+EPCFH PFYDCKA+ D G +VP+VRHCED+S
Sbjct: 287 GLKPWILYRPENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDIS 108
Query: 192 WGLKIV 209
W LK+V
Sbjct: 107 WELKLV 90
>gb|AV807820.1|AV807820 AV807820 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-52-C06 3',
mRNA sequence
Length = 443
Score = 71.2 bits (149), Expect(2) = 1e-021
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +3 / -3
Query: 21 PWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCK 128
PWI+ + EN TPDP C R MS+EPCFH PFYDC+
Sbjct: 336 PWILYRPENRTTPDPSCGRPMSMEPCFHSPPFYDCE 229
Score = 52.4 bits (108), Expect(2) = 1e-021
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / -1
Query: 126 KARKDTDLGKVVPYVRHCEDVSWGLKIV 209
KA+ D G +VP+VRHCED+SWGLK+V
Sbjct: 230 KAKTGIDTGTLVPHVRHCEDISWGLKLV 147
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 895,265,875
Number of Sequences: 1013581
Number of extensions: 10493288
Number of successful extensions: 205077
Number of sequences better than 1.0e-020: 18
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 24824691600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)