TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydr... 149 3e-041
gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, ... 149 3e-041
gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, compl... 149 3e-041
gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pe... 149 3e-041
emb|A83259.1| Sequence 1 from Patent WO9850568 149 3e-041
dbj|E64634.1| Method for modifying plant cell wall component 149 3e-041
gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC)... 149 3e-041
gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, ... 149 3e-041
ref|NM_118559.1| Arabidopsis thaliana hydrolase, hydrolyzin... 134 1e-036
gb|CF652570.1|CF652570 63-L020578-066-004-M16-SP6P MPIZ-ADI... 145 9e-034
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 74 1e-032
emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosom... 74 1e-032
gb|AC005861.4|AC005861 Arabidopsis thaliana clone F23B24, *... 74 1e-032
emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome ... 74 1e-032
ref|NM_105234.2| Arabidopsis thaliana hydrolase, hydrolyzin... 69 5e-025
emb|AX651256.1| Sequence 40 from Patent WO03000898 69 5e-025
gb|BU635691.1|BU635691 031E12 Infected Arabidopsis Leaf Ara... 67 1e-022
dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosom... 81 2e-022
dbj|E64635.1| Method for modifying plant cell wall component 81 2e-022
gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC)... 81 2e-022
gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D... 81 2e-022
gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis ... 69 2e-021
>ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydrolase, hydrolyzing
O-glycosyl compounds AT5G49720 (KOR1) mRNA, complete cds
Length = 2360
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 688 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 867
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 868 PEDMDYKRPVTTCN 909
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 916 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 1023
>gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, complete cds
Length = 2307
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 688 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 867
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 868 PEDMDYKRPVTTCN 909
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 916 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 1023
>gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, complete sequence
Length = 2303
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 688 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 867
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 868 PEDMDYKRPVTTCN 909
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 916 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 1023
>gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds
Length = 2257
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 638 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 817
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 818 PEDMDYKRPVTTCN 859
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +2
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 866 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 973
>emb|A83259.1| Sequence 1 from Patent WO9850568
Length = 2257
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 638 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 817
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 818 PEDMDYKRPVTTCN 859
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +2
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 866 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 973
>dbj|E64634.1| Method for modifying plant cell wall component
Length = 2257
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 638 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 817
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 818 PEDMDYKRPVTTCN 859
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +2
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 866 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 973
>gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC) mRNA, complete cds
Length = 2179
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 631 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 810
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 811 PEDMDYKRPVTTCN 852
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 859 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 966
>gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, complete cds
Length = 1866
Score = 149 bits (320), Expect(2) = 3e-041
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 568 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 747
Query: 176 PEDIDYKRPVTECH 135
PED+DYKRPVT C+
Sbjct: 748 PEDMDYKRPVTTCN 789
Score = 40.9 bits (83), Expect(2) = 3e-041
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 796 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 903
>ref|NM_118559.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT4G24260 mRNA, complete cds
Length = 1863
Score = 134 bits (287), Expect(2) = 1e-036
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+Y+A GEL+H+KELIKWGTDY LKTFNSSAD I +V QVG G + +GS NDHYCWMR
Sbjct: 571 KYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQVGSGVSGRGSELHNDHYCWMR 750
Query: 176 PEDIDYKRPVTECHS 132
PEDI YKR V++C+S
Sbjct: 751 PEDIHYKRTVSQCYS 795
Score = 40.5 bits (82), Expect(2) = 1e-036
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -3 / +1
Query: 134 SCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
SCSD SIVFKD++ YS LV GAK L
Sbjct: 796 SCSDLAAEMAAALASASIVFKDNRLYSKNLVHGAKTL 906
>gb|CF652570.1|CF652570 63-L020578-066-004-M16-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M164Q 5-PRIME, mRNA sequence
Length = 888
Score = 145 bits (311), Expect = 9e-034
Identities = 53/71 (74%), Positives = 63/71 (88%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QVG G+T G++ PNDHYCWMR
Sbjct: 650 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMR 829
Query: 176 PEDIDYKRPVT 144
PED+DYKRPVT
Sbjct: 830 PEDMDYKRPVT 862
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 73.9 bits (155), Expect(3) = 1e-032
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A GEL+H+KELIKWGTDY LKTFNSSAD I +V QV
Sbjct: 8492258 KYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQV 8492139
Score = 65.2 bits (136), Expect(3) = 1e-032
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -3 / -1
Query: 239 VGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHS 132
VG G + +GS NDHYCWMRPEDI YKR V++C+S
Sbjct: 8492065 VGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQCYS 8491958
Score = 40.5 bits (82), Expect(3) = 1e-032
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -3 / -1
Query: 134 SCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
SCSD SIVFKD++ YS LV GAK L
Sbjct: 8491957 SCSDLAAEMAAALASASIVFKDNRLYSKNLVHGAKTL 8491847
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
Length = 198402
Score = 73.9 bits (155), Expect(3) = 1e-032
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A GEL+H+KELIKWGTDY LKTFNSSAD I +V QV
Sbjct: 47194 KYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQV 47075
Score = 65.2 bits (136), Expect(3) = 1e-032
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -3 / -1
Query: 239 VGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHS 132
VG G + +GS NDHYCWMRPEDI YKR V++C+S
Sbjct: 47001 VGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQCYS 46894
Score = 40.5 bits (82), Expect(3) = 1e-032
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -3 / -1
Query: 134 SCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
SCSD SIVFKD++ YS LV GAK L
Sbjct: 46893 SCSDLAAEMAAALASASIVFKDNRLYSKNLVHGAKTL 46783
>gb|AC005861.4|AC005861 Arabidopsis thaliana clone F23B24, *** SEQUENCING IN PROGRESS ***, 6
unordered pieces
Length = 112369
Score = 73.9 bits (155), Expect(3) = 1e-032
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A GEL+H+KELIKWGTDY LKTFNSSAD I +V QV
Sbjct: 36651 KYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQV 36532
Score = 65.2 bits (136), Expect(3) = 1e-032
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -3 / -3
Query: 239 VGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHS 132
VG G + +GS NDHYCWMRPEDI YKR V++C+S
Sbjct: 36458 VGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQCYS 36351
Score = 40.5 bits (82), Expect(3) = 1e-032
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -3 / -3
Query: 134 SCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
SCSD SIVFKD++ YS LV GAK L
Sbjct: 36350 SCSDLAAEMAAALASASIVFKDNRLYSKNLVHGAKTL 36240
>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project)
Length = 108459
Score = 73.9 bits (155), Expect(3) = 1e-032
Identities = 29/40 (72%), Positives = 34/40 (85%)
Frame = -3 / -1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A GEL+H+KELIKWGTDY LKTFNSSAD I +V QV
Sbjct: 30537 KYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQV 30418
Score = 65.2 bits (136), Expect(3) = 1e-032
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = -3 / -2
Query: 239 VGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHS 132
VG G + +GS NDHYCWMRPEDI YKR V++C+S
Sbjct: 30344 VGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQCYS 30237
Score = 40.5 bits (82), Expect(3) = 1e-032
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = -3 / -2
Query: 134 SCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
SCSD SIVFKD++ YS LV GAK L
Sbjct: 30236 SCSDLAAEMAAALASASIVFKDNRLYSKNLVHGAKTL 30126
>ref|NM_105234.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT1G65610 mRNA, complete cds
Length = 2115
Score = 68.9 bits (144), Expect(2) = 5e-025
Identities = 29/70 (41%), Positives = 36/70 (51%)
Frame = -3 / +1
Query: 233 VGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYS 54
VG + S P+D YCW +PED+ Y RPV S +D SIVF D Y+
Sbjct: 799 VGGGLRDSESPDDIYCWQKPEDMSYDRPVLSSTSAADLGAEVSAALAAASIVFTDKPDYA 978
Query: 53 DKLVKGAKAL 24
KL KGA+ L
Sbjct: 979 KKLKKGAETL 1008
Score = 67.0 bits (140), Expect(2) = 5e-025
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVG 228
+Y+AI E DH+++++KWGTDY+L TFN+SA +D I QVG G
Sbjct: 682 KYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQVGGG 810
>emb|AX651256.1| Sequence 40 from Patent WO03000898
Length = 1872
Score = 68.9 bits (144), Expect(2) = 5e-025
Identities = 29/70 (41%), Positives = 36/70 (51%)
Frame = -3 / +1
Query: 233 VGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYS 54
VG + S P+D YCW +PED+ Y RPV S +D SIVF D Y+
Sbjct: 700 VGGGLRDSESPDDIYCWQKPEDMSYDRPVLSSTSAADLGAEVSAALAAASIVFTDKPDYA 879
Query: 53 DKLVKGAKAL 24
KL KGA+ L
Sbjct: 880 KKLKKGAETL 909
Score = 67.0 bits (140), Expect(2) = 5e-025
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVG 228
+Y+AI E DH+++++KWGTDY+L TFN+SA +D I QVG G
Sbjct: 583 KYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQVGGG 711
>gb|BU635691.1|BU635691 031E12 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 741
Score = 67.0 bits (140), Expect(2) = 1e-022
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVG 228
+Y+AI E DH+++++KWGTDY+L TFN+SA +D I QVG G
Sbjct: 166 KYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQVGGG 294
Score = 60.6 bits (126), Expect(2) = 1e-022
Identities = 25/58 (43%), Positives = 30/58 (51%)
Frame = -3 / +2
Query: 197 DHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
D YCW +PED+ Y RPV S +D SIVF D Y+ KL KGA+ L
Sbjct: 320 DIYCWQKPEDMSYDRPVLSSTSAADLGAEVSAALAAASIVFTDKPDYAKKLKKGAETL 493
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5
Length = 71807
Score = 81.3 bits (171), Expect(3) = 2e-022
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / -3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGS 210
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QV V D + S
Sbjct: 36528 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVLVYDLRRRS 36382
Score = 40.9 bits (83), Expect(3) = 2e-022
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / -1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 36227 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 36120
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2 / -3
Query: 204 A**PLLLDETRGHRLQKA 151
+**PLLLD T G+ L KA
Sbjct: 36303 S**PLLLDAT*GYGL*KA 36250
>dbj|E64635.1| Method for modifying plant cell wall component
Length = 12319
Score = 81.3 bits (171), Expect(3) = 2e-022
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGS 210
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QV V D + S
Sbjct: 4092 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVLVYDLRRRS 4238
Score = 40.9 bits (83), Expect(3) = 2e-022
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +1
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 4393 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 4500
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2 / +3
Query: 204 A**PLLLDETRGHRLQKA 151
+**PLLLD T G+ L KA
Sbjct: 4317 S**PLLLDAT*GYGL*KA 4370
>gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC) gene, complete cds
Length = 4033
Score = 81.3 bits (171), Expect(3) = 2e-022
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGS 210
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QV V D + S
Sbjct: 1633 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVLVYDLRRRS 1779
Score = 40.9 bits (83), Expect(3) = 2e-022
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +2
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 1934 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 2041
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2 / +1
Query: 204 A**PLLLDETRGHRLQKA 151
+**PLLLD T G+ L KA
Sbjct: 1858 S**PLLLDAT*GYGL*KA 1911
>gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene,
KOR-1 allele, complete cds
Length = 2873
Score = 81.3 bits (171), Expect(3) = 2e-022
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGS 210
+YEA GEL H+KELIKWGTDY LKTFNS+AD+ID +V+QV V D + S
Sbjct: 794 KYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVLVYDLRRRS 940
Score = 40.9 bits (83), Expect(3) = 2e-022
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / +3
Query: 131 CSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
CSD SIVFKD+K YS KLV GAK +
Sbjct: 1095 CSDLAAEMAAALASASIVFKDNKEYSKKLVHGAKVV 1202
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2 / +2
Query: 204 A**PLLLDETRGHRLQKA 151
+**PLLLD T G+ L KA
Sbjct: 1019 S**PLLLDAT*GYGL*KA 1072
>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 109560
Score = 68.9 bits (144), Expect(2) = 2e-021
Identities = 29/70 (41%), Positives = 36/70 (51%)
Frame = -3 / -1
Query: 233 VGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYS 54
VG + S P+D YCW +PED+ Y RPV S +D SIVF D Y+
Sbjct: 72225 VGGGLRDSESPDDIYCWQKPEDMSYDRPVLSSTSAADLGAEVSAALAAASIVFTDKPDYA 72046
Query: 53 DKLVKGAKAL 24
KL KGA+ L
Sbjct: 72045 KKLKKGAETL 72016
Score = 62.9 bits (131), Expect(2) = 2e-021
Identities = 22/40 (55%), Positives = 32/40 (80%)
Frame = -3 / -1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+AI E DH+++++KWGTDY+L TFN+SA +D I QV
Sbjct: 72519 KYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQV 72400
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 650,774,815
Number of Sequences: 1013581
Number of extensions: 7480704
Number of successful extensions: 186661
Number of sequences better than 1.0e-020: 25
length of database: 302,980,290
effective HSP length: 53
effective length of database: 249,260,497
effective search space used: 17448234790
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)