TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829406.2.1
(673 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF652954.1|CF652954 86-L020578-066-004-K22-SP6P MPIZ-ADI... 105 4e-028
ref|NM_120678.2| Arabidopsis thaliana lipid binding AT5G059... 105 4e-028
gb|AY086919.1| Arabidopsis thaliana clone 29476 mRNA, compl... 105 4e-028
gb|AI993885.1|AI993885 701515307 A. thaliana, Ohio State cl... 105 4e-028
gb|AU226144.1|AU226144 AU226144 RAFL14 Arabidopsis thaliana... 105 4e-028
gb|BP635293.1|BP635293 BP635293 RAFL17 Arabidopsis thaliana... 105 4e-028
gb|CF652808.1|CF652808 78-L020164-066-001-K20-SP6P MPIZ-ADI... 105 4e-028
gb|BT006519.1| Arabidopsis thaliana At3g53980 gene, complet... 100 4e-026
gb|CF651632.1|CF651632 09-L020361-066-002-B03-SP6P MPIZ-ADI... 100 4e-026
gb|AY088350.1| Arabidopsis thaliana clone 5920 mRNA, comple... 100 4e-026
ref|NM_115258.2| Arabidopsis thaliana lipid binding AT3G539... 100 4e-026
gb|BT002445.1| Arabidopsis thaliana putative protein (At3g5... 100 4e-026
gb|CB256721.1|CB256721 63-E012737-027-002-M15-T7R MPIZ-ADIS... 100 4e-026
ref|NM_180369.2| Arabidopsis thaliana lipid binding AT3G539... 100 4e-026
gb|AV531347.1|AV531347 AV531347 Arabidopsis thaliana flower... 96 6e-025
dbj|AB017060.1| Arabidopsis thaliana genomic DNA, chromosom... 91 6e-024
gb|BP580606.1|BP580606 BP580606 RAFL14 Arabidopsis thaliana... 105 2e-023
emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome ... 90 4e-023
gb|T22959.1|T22959 4967 Lambda-PRL2 Arabidopsis thaliana cD... 87 3e-022
gb|AA395753.1|AA395753 25741 Lambda-PRL2 Arabidopsis thalia... 56 5e-022
>gb|CF652954.1|CF652954 86-L020578-066-004-K22-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K224Q 5-PRIME, mRNA sequence
Length = 584
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 193 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 354
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / -1
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 338 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 192
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 191 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 63
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 64 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 195
>ref|NM_120678.2| Arabidopsis thaliana lipid binding AT5G05960 mRNA, complete cds
Length = 515
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 227 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 388
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / -3
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 372 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 226
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 225 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 97
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 98 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 229
>gb|AY086919.1| Arabidopsis thaliana clone 29476 mRNA, complete sequence
Length = 513
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 227 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 388
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / -1
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 372 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 226
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / -1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 225 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 97
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 98 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 229
>gb|AI993885.1|AI993885 701515307 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701515307, mRNA sequence
Length = 492
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 204 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 365
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / -3
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 349 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 203
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 202 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 74
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 75 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 206
>gb|AU226144.1|AU226144 AU226144 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-P22 3',
mRNA sequence
Length = 435
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / -2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 287 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 126
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / +1
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 142 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 288
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / +1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 289 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 417
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / -2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 416 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 285
>gb|BP635293.1|BP635293 BP635293 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-37-L10 3',
mRNA sequence
Length = 435
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / -2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 287 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 126
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / +1
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 142 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 288
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / +1
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 289 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 417
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / -2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 416 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 285
>gb|CF652808.1|CF652808 78-L020164-066-001-K20-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K201Q 5-PRIME, mRNA sequence
Length = 430
Score = 105 bits (223), Expect(2) = 4e-028
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 202 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 363
Score = 79.0 bits (166), Expect(2) = 3e-022
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +2 / -3
Query: 302 GRV*SPHL*PTGRSTRLQRLGMVMATSGLIPDFLAVLDSMTAQRHWGLC 448
GRV*+PHL*PTGR LQRLG+V+ SG P+ LAV +SMTAQRH+G C
Sbjct: 347 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFC 201
Score = 48.3 bits (99), Expect(2) = 3e-022
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = +2 / -3
Query: 452 PMVCTAVQQPLDGAELGFCAADAHGASFSAILSGGVAPHSPAP 580
P+ T QQ D CAA A GA+F A LSGG PHSPAP
Sbjct: 200 PICFTRAQQIADTLADVSCAAIAQGANFMASLSGGFLPHSPAP 72
Score = 41.8 bits (85), Expect(2) = 4e-028
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 73 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 204
>gb|BT006519.1| Arabidopsis thaliana At3g53980 gene, complete cds
Length = 345
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 196 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 345
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 67 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 183
>gb|CF651632.1|CF651632 09-L020361-066-002-B03-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001B032Q 5-PRIME, mRNA sequence
Length = 635
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 236 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 385
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 107 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 223
>gb|AY088350.1| Arabidopsis thaliana clone 5920 mRNA, complete sequence
Length = 593
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 263 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 412
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 134 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 250
>ref|NM_115258.2| Arabidopsis thaliana lipid binding AT3G53980 transcript variant
AT3G53980.1 mRNA, complete cds
Length = 592
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 262 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 411
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 133 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 249
>gb|BT002445.1| Arabidopsis thaliana putative protein (At3g53980) mRNA, complete
cds
Length = 589
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 262 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 411
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 133 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 249
>gb|CB256721.1|CB256721 63-E012737-027-002-M15-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772M152Q 5-PRIME, mRNA sequence
Length = 578
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 256 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 405
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 127 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 243
>ref|NM_180369.2| Arabidopsis thaliana lipid binding AT3G53980 transcript variant
AT3G53980.2 mRNA, complete cds
Length = 555
Score = 100 bits (212), Expect(2) = 4e-026
Identities = 37/50 (74%), Positives = 44/50 (88%)
Frame = -2 / +3
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 252 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 401
Score = 40.0 bits (81), Expect(2) = 4e-026
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +3
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 123 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 239
>gb|AV531347.1|AV531347 AV531347 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB019h11F 3', mRNA sequence
Length = 542
Score = 96.4 bits (204), Expect(2) = 6e-025
Identities = 36/50 (72%), Positives = 43/50 (86%)
Frame = -2 / -1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP* 298
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKC YTLP*
Sbjct: 329 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCEAYTLP* 180
Score = 40.0 bits (81), Expect(2) = 6e-025
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / -1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 458 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 342
>dbj|AB017060.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18J17
Length = 54252
Score = 90.9 bits (192), Expect(2) = 6e-024
Identities = 32/44 (72%), Positives = 40/44 (90%)
Frame = -2 / +2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCG 316
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG
Sbjct: 23345 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCG 23476
Score = 41.8 bits (85), Expect(2) = 6e-024
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2 / +2
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
GAGECG PPDR A+KL S CC V +G+
Sbjct: 23216 GAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 23347
>gb|BP580606.1|BP580606 BP580606 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-28-F01 3',
mRNA sequence
Length = 396
Score = 105 bits (223), Expect(2) = 2e-023
Identities = 38/54 (70%), Positives = 49/54 (90%)
Frame = -2 / -2
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTLP*AARE 286
Q+P+CLCAVMLS TA+ SG KPE+++TIPKRCN+ +RPVGYKCG YTLP*++R+
Sbjct: 287 QNPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP*SSRQ 126
Score = 25.8 bits (50), Expect(2) = 2e-023
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2 / -2
Query: 555 PPDRMALKLXXXXXXXXXXXXXXSNGCCTAVHTIGK 448
PPDR A+KL S CC V +G+
Sbjct: 392 PPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 285
>emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20
Length = 119407
Score = 90.0 bits (190), Expect(2) = 4e-023
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = -2 / -1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCG 316
Q+P+CLCA++LS TAK SG+ PEVA+TIPKRCN +RPVGYKCG
Sbjct: 90517 QNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCG 90386
Score = 40.0 bits (81), Expect(2) = 4e-023
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / -1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 90646 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 90530
>gb|T22959.1|T22959 4967 Lambda-PRL2 Arabidopsis thaliana cDNA clone 108E5T7, mRNA
sequence
Length = 509
Score = 87.2 bits (184), Expect(2) = 3e-022
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAITIPKRCNLVDRPVGYKCGDYTL 304
Q+P+CLCA+ LS TAK SG+ PEVA+TIPKRCN RPVGYK G YT+
Sbjct: 244 QNPKCLCAIXLSDTAKASGVDPEVALTIPKRCNFGXRPVGYKXGGYTI 387
Score = 40.0 bits (81), Expect(2) = 3e-022
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 115 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 231
>gb|AA395753.1|AA395753 25741 Lambda-PRL2 Arabidopsis thaliana cDNA clone 286F9T7 3', mRNA
sequence
Length = 532
Score = 55.6 bits (115), Expect(3) = 5e-022
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -2 / +3
Query: 372 ITIPKRCNLVDRPVGYKCGDYTLP* 298
+TIPKRCN +RPVGYKCG YTLP*
Sbjct: 318 LTIPKRCNFANRPVGYKCGAYTLP* 392
Score = 48.3 bits (99), Expect(3) = 5e-022
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = -2 / +1
Query: 447 QSPQCLCAVMLSKTAKKSGIKPEVAI 370
Q+P+CLCA++LS TAK SG+ PEVA+
Sbjct: 244 QNPKCLCAILLSDTAKASGVDPEVAL 321
Score = 40.0 bits (81), Expect(3) = 5e-022
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2 / +1
Query: 579 GAGECGATPPDRMALKLXXXXXXXXXXXXXXSNGCCTAV 463
GAGECG + PD A+KL GCCT +
Sbjct: 115 GAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQI 231
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,086,865,131
Number of Sequences: 1013581
Number of extensions: 13430000
Number of successful extensions: 106678
Number of sequences better than 1.0e-020: 22
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 41535200280
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)