TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696537.2.1
(592 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, compl... 214 2e-054
gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA... 214 2e-054
gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene... 214 2e-054
gb|DQ059131.1| Arabidopsis thaliana RING finger family prot... 214 2e-054
ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein lig... 214 2e-054
gb|AV783078.1|AV783078 AV783078 RAFL5 Arabidopsis thaliana ... 201 2e-050
gb|CF651317.1|CF651317 30-E021110-013-001-K07-T7R MPIZ-ADIS... 201 2e-050
gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRN... 201 2e-050
ref|NM_122467.2| Arabidopsis thaliana protein binding / ubi... 201 2e-050
emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cD... 197 2e-049
dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protei... 181 2e-044
gb|CF651318.1|CF651318 30-E9213-013-001-K07-T7R MPIZ-ADIS-0... 179 7e-044
gb|C99815.1|C99815 C99815 YAC clone CIC8B11 region-specific... 172 9e-042
gb|AV543982.1|AV543982 AV543982 Arabidopsis thaliana roots ... 172 9e-042
gb|AY064060.1| Arabidopsis thaliana unknown protein (At5g18... 172 9e-042
gb|AY096370.1| Arabidopsis thaliana unknown protein (At5g18... 172 9e-042
emb|BX829794.1|CNS0A03H Arabidopsis thaliana Full-length cD... 172 9e-042
emb|CQ803772.1| Sequence 183 from Patent WO2004035798 172 9e-042
ref|NM_121870.3| Arabidopsis thaliana protein binding / ubi... 172 9e-042
emb|BX830637.1|CNS0A048 Arabidopsis thaliana Full-length cD... 169 8e-041
gb|AI996895.1|AI996895 701516501 A. thaliana, Columbia Col-... 168 1e-040
gb|BP816757.1|BP816757 BP816757 RAFL19 Arabidopsis thaliana... 125 4e-040
dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosom... 76 1e-039
gb|AV540574.1|AV540574 AV540574 Arabidopsis thaliana roots ... 164 2e-039
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 74 8e-039
gb|BP864319.1|BP864319 BP864319 RAFL21 Arabidopsis thaliana... 117 1e-038
gb|CA781795.1|CA781795 050D05AF Infected Arabidopsis Leaf A... 158 2e-037
gb|BP616432.1|BP616432 BP616432 RAFL16 Arabidopsis thaliana... 149 7e-035
gb|BP592325.1|BP592325 BP592325 RAFL15 Arabidopsis thaliana... 142 8e-033
gb|BP668651.1|BP668651 BP668651 RAFL21 Arabidopsis thaliana... 142 8e-033
emb|BX841616.1|CNS09YKN Arabidopsis thaliana Full-length cD... 140 4e-032
ref|NM_116162.4| Arabidopsis thaliana protein binding / ubi... 100 2e-031
gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complet... 100 2e-031
gb|AV795888.1|AV795888 AV795888 RAFL8 Arabidopsis thaliana ... 137 4e-031
gb|BP782779.1|BP782779 BP782779 RAFL7 Arabidopsis thaliana ... 137 4e-031
gb|BP603951.1|BP603951 BP603951 RAFL16 Arabidopsis thaliana... 136 5e-031
gb|BP670913.1|BP670913 BP670913 RAFL21 Arabidopsis thaliana... 135 1e-030
gb|AI998792.1|AI998792 701546931 A. thaliana, Columbia Col-... 134 2e-030
gb|BP650517.1|BP650517 BP650517 RAFL19 Arabidopsis thaliana... 134 2e-030
emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cD... 97 3e-030
gb|BP588580.1|BP588580 BP588580 RAFL15 Arabidopsis thaliana... 132 9e-030
gb|BP589092.1|BP589092 BP589092 RAFL15 Arabidopsis thaliana... 132 9e-030
gb|CF774264.1|CF774264 AG_FSL_30B06 Arabidopsis ag-1 35S:AG... 127 9e-030
gb|AV537130.1|AV537130 AV537130 Arabidopsis thaliana liquid... 128 2e-028
gb|BP671104.1|BP671104 BP671104 RAFL21 Arabidopsis thaliana... 98 5e-028
gb|BP634909.1|BP634909 BP634909 RAFL17 Arabidopsis thaliana... 122 1e-026
gb|BP619312.1|BP619312 BP619312 RAFL16 Arabidopsis thaliana... 97 1e-026
gb|AV793724.1|AV793724 AV793724 RAFL8 Arabidopsis thaliana ... 115 4e-026
gb|BP600359.1|BP600359 BP600359 RAFL16 Arabidopsis thaliana... 119 9e-026
gb|BP603037.1|BP603037 BP603037 RAFL16 Arabidopsis thaliana... 94 1e-025
gb|BP590494.1|BP590494 BP590494 RAFL15 Arabidopsis thaliana... 103 2e-025
gb|BP566730.1|BP566730 BP566730 RAFL14 Arabidopsis thaliana... 116 4e-025
gb|BP567913.1|BP567913 BP567913 RAFL14 Arabidopsis thaliana... 116 4e-025
gb|AI999784.1|AI999784 701557443 A. thaliana, Columbia Col-... 109 3e-024
gb|BP664065.1|BP664065 BP664065 RAFL21 Arabidopsis thaliana... 65 3e-024
gb|BP615097.1|BP615097 BP615097 RAFL16 Arabidopsis thaliana... 55 5e-024
gb|BP619378.1|BP619378 BP619378 RAFL16 Arabidopsis thaliana... 110 5e-023
gb|BP647596.1|BP647596 BP647596 RAFL19 Arabidopsis thaliana... 106 6e-023
gb|BP662072.1|BP662072 BP662072 RAFL21 Arabidopsis thaliana... 89 1e-022
gb|BT011670.1| Arabidopsis thaliana At1g74760 mRNA, complet... 79 2e-022
gb|DQ086838.1| Arabidopsis thaliana At1g74760 mRNA, complet... 79 2e-022
ref|NM_106134.1| Arabidopsis thaliana protein binding / ubi... 79 2e-022
ref|NM_101748.1| Arabidopsis thaliana protein binding / ubi... 79 2e-022
gb|BP669983.1|BP669983 BP669983 RAFL21 Arabidopsis thaliana... 49 2e-021
gb|AY094471.1| Arabidopsis thaliana AT3g18290/MIE15_8 mRNA,... 75 5e-021
ref|NM_112713.2| Arabidopsis thaliana EMB2454; protein bind... 75 5e-021
gb|BT005819.1| Arabidopsis thaliana At3g18290/MIE15_8 gene,... 75 5e-021
gb|AC051627.4|AC051627 Genomic Sequence For Arabidopsis tha... 63 9e-021
>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence
Length = 1145
Score = 214 bits (462), Expect = 2e-054
Identities = 73/113 (64%), Positives = 94/113 (83%)
Frame = -2 / +2
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHHNCPVC EYLFDS + I+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+K
Sbjct: 626 MHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKK 805
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
LD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 806 LDEEVAAYPMPKLYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 964
Score = 119 bits (255), Expect = 6e-026
Identities = 64/112 (57%), Positives = 69/112 (61%)
Frame = +2 / -3
Query: 257 VCRVL*ELHPGHLCAKMWNCTLDVTPQSLQRIHTIFF**IAGIGDAATC*SSFCQMSDML 436
VC VL*E HLCA N T PQSLQRIHTI F GIG AAT SSF DM
Sbjct: 960 VCLVL*EPQLLHLCAIK*NRTFVFEPQSLQRIHTILFSYNFGIGYAATSSSSFFHRLDMS 781
Query: 437 QADLRHTGHENCWCALIS*RHSRWMVCPQWSTLIAFIESNRYSMQTGQL*CI 592
DL HTGH C+ IS HSR +V P T+I+ +ESNRYS QTGQL*CI
Sbjct: 780 HMDLEHTGHVYRLCSPISFVHSRCIV*PHRRTVISLVESNRYSKQTGQL*CI 625
>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds
Length = 1183
Score = 214 bits (461), Expect = 2e-054
Identities = 73/113 (64%), Positives = 94/113 (83%)
Frame = -2 / +2
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHHNCPVC EYLFDS + I+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+K
Sbjct: 626 MHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKK 805
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
LD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 806 LDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 964
Score = 122 bits (262), Expect = 7e-027
Identities = 65/112 (58%), Positives = 70/112 (62%)
Frame = +2 / -2
Query: 257 VCRVL*ELHPGHLCAKMWNCTLDVTPQSLQRIHTIFF**IAGIGDAATC*SSFCQMSDML 436
VC VL*E HLCA N T PQSLQRIHTI F I GIG AAT SSF DM
Sbjct: 960 VCLVL*EPQLLHLCAIK*NRTFVFEPQSLQRIHTILFSYIFGIGYAATSSSSFFHRLDMS 781
Query: 437 QADLRHTGHENCWCALIS*RHSRWMVCPQWSTLIAFIESNRYSMQTGQL*CI 592
DL HTGH C+ IS HSR +V P T+I+ +ESNRYS QTGQL*CI
Sbjct: 780 HMDLEHTGHVYRLCSPISFVHSRCIV*PHRRTVISLVESNRYSKQTGQL*CI 625
>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds
Length = 876
Score = 214 bits (461), Expect = 2e-054
Identities = 73/113 (64%), Positives = 94/113 (83%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHHNCPVC EYLFDS + I+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+K
Sbjct: 475 MHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKK 654
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
LD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 655 LDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 813
Score = 122 bits (262), Expect = 7e-027
Identities = 65/112 (58%), Positives = 70/112 (62%)
Frame = +2 / -2
Query: 257 VCRVL*ELHPGHLCAKMWNCTLDVTPQSLQRIHTIFF**IAGIGDAATC*SSFCQMSDML 436
VC VL*E HLCA N T PQSLQRIHTI F I GIG AAT SSF DM
Sbjct: 809 VCLVL*EPQLLHLCAIK*NRTFVFEPQSLQRIHTILFSYIFGIGYAATSSSSFFHRLDMS 630
Query: 437 QADLRHTGHENCWCALIS*RHSRWMVCPQWSTLIAFIESNRYSMQTGQL*CI 592
DL HTGH C+ IS HSR +V P T+I+ +ESNRYS QTGQL*CI
Sbjct: 629 HMDLEHTGHVYRLCSPISFVHSRCIV*PHRRTVISLVESNRYSKQTGQL*CI 474
>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA,
complete cds
Length = 876
Score = 214 bits (461), Expect = 2e-054
Identities = 73/113 (64%), Positives = 94/113 (83%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHHNCPVC EYLFDS + I+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+K
Sbjct: 475 MHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKK 654
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
LD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 655 LDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 813
Score = 122 bits (262), Expect = 7e-027
Identities = 65/112 (58%), Positives = 70/112 (62%)
Frame = +2 / -2
Query: 257 VCRVL*ELHPGHLCAKMWNCTLDVTPQSLQRIHTIFF**IAGIGDAATC*SSFCQMSDML 436
VC VL*E HLCA N T PQSLQRIHTI F I GIG AAT SSF DM
Sbjct: 809 VCLVL*EPQLLHLCAIK*NRTFVFEPQSLQRIHTILFSYIFGIGYAATSSSSFFHRLDMS 630
Query: 437 QADLRHTGHENCWCALIS*RHSRWMVCPQWSTLIAFIESNRYSMQTGQL*CI 592
DL HTGH C+ IS HSR +V P T+I+ +ESNRYS QTGQL*CI
Sbjct: 629 HMDLEHTGHVYRLCSPISFVHSRCIV*PHRRTVISLVESNRYSKQTGQL*CI 474
>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT5G22920 mRNA, complete cds
Length = 1262
Score = 214 bits (461), Expect = 2e-054
Identities = 73/113 (64%), Positives = 94/113 (83%)
Frame = -2 / +3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHHNCPVC EYLFDS + I+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+K
Sbjct: 627 MHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKK 806
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
LD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 807 LDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 965
Score = 122 bits (262), Expect = 7e-027
Identities = 65/112 (58%), Positives = 70/112 (62%)
Frame = +2 / -2
Query: 257 VCRVL*ELHPGHLCAKMWNCTLDVTPQSLQRIHTIFF**IAGIGDAATC*SSFCQMSDML 436
VC VL*E HLCA N T PQSLQRIHTI F I GIG AAT SSF DM
Sbjct: 961 VCLVL*EPQLLHLCAIK*NRTFVFEPQSLQRIHTILFSYIFGIGYAATSSSSFFHRLDMS 782
Query: 437 QADLRHTGHENCWCALIS*RHSRWMVCPQWSTLIAFIESNRYSMQTGQL*CI 592
DL HTGH C+ IS HSR +V P T+I+ +ESNRYS QTGQL*CI
Sbjct: 781 HMDLEHTGHVYRLCSPISFVHSRCIV*PHRRTVISLVESNRYSKQTGQL*CI 626
>gb|AV783078.1|AV783078 AV783078 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-05-C04 3',
mRNA sequence
Length = 706
Score = 201 bits (433), Expect = 2e-050
Identities = 68/114 (59%), Positives = 90/114 (78%)
Frame = -2 / -1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+CP+C E+LF+S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 658 MHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 479
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 478 FDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 317
>gb|CF651317.1|CF651317 30-E021110-013-001-K07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K071Q 5-PRIME, mRNA sequence
Length = 716
Score = 201 bits (433), Expect = 2e-050
Identities = 68/114 (59%), Positives = 90/114 (78%)
Frame = -2 / +3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+CP+C E+LF+S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 93 MHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 272
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 273 FDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 434
>gb|AY070720.1| Arabidopsis thaliana AT5g25560/T14C9_100 mRNA sequence
Length = 2903
Score = 201 bits (433), Expect = 2e-050
Identities = 68/114 (59%), Positives = 90/114 (78%)
Frame = -2 / +2
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+CP+C E+LF+S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 2246 MHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 2425
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 2426 FDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 2587
>ref|NM_122467.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc
ion binding AT5G25560 mRNA, complete cds
Length = 1034
Score = 201 bits (433), Expect = 2e-050
Identities = 68/114 (59%), Positives = 90/114 (78%)
Frame = -2 / +3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+CP+C E+LF+S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 690 MHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 869
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 870 FDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 1031
>emb|BX831389.1|CNS0A1NP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS85ZE03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2640
Score = 197 bits (425), Expect = 2e-049
Identities = 67/114 (58%), Positives = 89/114 (78%)
Frame = -2 / +3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+CP+C E+L +S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 2049 MHHDCPICFEFLSESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 2228
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 2229 FDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 2390
>dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protein, complete cds, clone:
RAFL21-69-N21
Length = 493
Score = 181 bits (389), Expect = 2e-044
Identities = 62/101 (61%), Positives = 83/101 (82%)
Frame = -2 / +1
Query: 555 FDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPA 376
FDS + I+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+KLD++VAA PMP
Sbjct: 1 FDSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPK 180
Query: 375 IYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
+Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 181 MYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 303
>gb|CF651318.1|CF651318 30-E9213-013-001-K07-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K071Q 5-PRIME, mRNA sequence
Length = 477
Score = 179 bits (385), Expect = 7e-044
Identities = 59/104 (56%), Positives = 81/104 (77%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+CP+C E+LF+S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 91 MHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 270
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGC 280
D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP C
Sbjct: 271 FDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCPNC 402
>gb|C99815.1|C99815 C99815 YAC clone CIC8B11 region-specific cDNA Arabidopsis thaliana
cDNA clone 8B11-40, mRNA sequence
Length = 480
Score = 172 bits (370), Expect = 9e-042
Identities = 58/94 (61%), Positives = 78/94 (82%)
Frame = -2 / +1
Query: 534 SVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMV 355
+VL CGHT+HLEC +M H +++CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMV
Sbjct: 1 TVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMV 180
Query: 354 WILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
WILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 181 WILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 282
>gb|AV543982.1|AV543982 AV543982 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ29g11F 3', mRNA sequence
Length = 643
Score = 172 bits (370), Expect = 9e-042
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -2 / -3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 638 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 459
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 458 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 309
>gb|AY064060.1| Arabidopsis thaliana unknown protein (At5g18650) mRNA, complete cds
Length = 1470
Score = 172 bits (370), Expect = 9e-042
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 784 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 963
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 964 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 1113
>gb|AY096370.1| Arabidopsis thaliana unknown protein (At5g18650) mRNA, complete cds
Length = 835
Score = 172 bits (370), Expect = 9e-042
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 445 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 624
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 625 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 774
>emb|BX829794.1|CNS0A03H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB37ZF09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1413
Score = 172 bits (370), Expect = 9e-042
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -2 / +2
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 770 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 949
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 950 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 1099
>emb|CQ803772.1| Sequence 183 from Patent WO2004035798
Length = 804
Score = 172 bits (370), Expect = 9e-042
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 445 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 624
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 625 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 774
>ref|NM_121870.3| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc
ion binding AT5G18650 mRNA, complete cds
Length = 1480
Score = 172 bits (370), Expect = 9e-042
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 793 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 972
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 973 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 1122
>emb|BX830637.1|CNS0A048 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZF05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1393
Score = 169 bits (363), Expect = 8e-041
Identities = 59/110 (53%), Positives = 78/110 (70%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLF S+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 772 MRHHCPICYEYLFHSLKHTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 951
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 952 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 1101
>gb|AI996895.1|AI996895 701516501 A. thaliana, Columbia Col-0, root-2 Arabidopsis thaliana
cDNA clone 701516501, mRNA sequence
Length = 510
Score = 168 bits (362), Expect = 1e-040
Identities = 58/96 (60%), Positives = 76/96 (79%)
Frame = -2 / -1
Query: 537 ISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKM 358
++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K D ++AA+PMP YQ +M
Sbjct: 504 VTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRM 325
Query: 357 VWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
V ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 324 VQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 217
>gb|BP816757.1|BP816757 BP816757 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-42-P13 5',
mRNA sequence
Length = 406
Score = 125 bits (267), Expect(3) = 4e-040
Identities = 42/72 (58%), Positives = 57/72 (79%)
Frame = -2 / +3
Query: 543 KAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQK 364
K L CGHT+HLEC +M H +++CPVC +S C+MS++W+KLD++VAA PMP +Y+
Sbjct: 33 KRYHCLRCGHTMHLECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYEN 212
Query: 363 KMVWILCNDCGV 328
KMVWILCNDCG+
Sbjct: 213 KMVWILCNDCGL 248
Score = 49.6 bits (102), Expect(3) = 4e-040
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -2 / +1
Query: 324 SNVQFHILAHKCPGCSSYNTRQTR 253
+NV+FH++AHKC C SYNTRQT+
Sbjct: 253 TNVRFHLIAHKCSSCGSYNTRQTQ 324
Score = 30.4 bits (60), Expect(3) = 4e-040
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2 / +1
Query: 576 PVCMEYLFDSMKAISV 529
PVC EYLFDS + I+V
Sbjct: 1 PVCFEYLFDSTRDITV 48
>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17
Length = 86065
Score = 75.8 bits (159), Expect(5) = 1e-039
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = -2 / +1
Query: 357 VWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
VWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 61348 VWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 61452
Score = 56.5 bits (117), Expect(5) = 1e-039
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2 / +3
Query: 573 VCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQ 469
+C +YLFDS + I+VL CGHT+HLEC +M H +
Sbjct: 60864 ICSQYLFDSTRDITVLRCGHTMHLECTKDMGLHNR 60968
Score = 46.0 bits (94), Expect(5) = 1e-039
Identities = 13/25 (52%), Positives = 23/25 (92%)
Frame = -2 / +3
Query: 471 QFSCPVCLRSACNMSDIWQKLDQQV 397
+++CPVC +S C+MS++W+KLD++V
Sbjct: 61053 RYTCPVCSKSICDMSNLWKKLDEEV 61127
Score = 30.9 bits (61), Expect(5) = 1e-039
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2 / +3
Query: 591 MHHNCPVCME 562
MHHNCPVC E
Sbjct: 60762 MHHNCPVCFE 60791
Score = 29.0 bits (57), Expect(5) = 1e-039
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2 / +2
Query: 402 QVAASPMPAIYQKKMV 355
QVAA PMP +Y+ KMV
Sbjct: 61202 QVAAYPMPKMYENKMV 61249
>gb|AV540574.1|AV540574 AV540574 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ152a05F 3', mRNA sequence
Length = 496
Score = 164 bits (353), Expect = 2e-039
Identities = 58/110 (52%), Positives = 78/110 (70%)
Frame = -2 / -1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+C +C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +M W +
Sbjct: 403 MRHHCHICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRVKFCCPICSRSVIDMCKTWHR 224
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
LD+++ AS MP+ Y+ K VWILCNDC V++ VQFHI+ KC C SY+TR
Sbjct: 223 LDEEIEASAMPSDYRDKKVWILCNDCTVSTEVQFHIIGQKCGHCRSYSTR 74
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
Length = 110684
Score = 74.4 bits (156), Expect(4) = 8e-039
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = -2 / +1
Query: 366 KKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTRG 250
+K V ILCNDCG + VQ+H++A KCP C SYNTRQTRG
Sbjct: 59062 QKQVQILCNDCGKKAEVQYHVVAQKCPNCKSYNTRQTRG 59178
Score = 63.4 bits (132), Expect(4) = 8e-039
Identities = 19/39 (48%), Positives = 31/39 (79%)
Frame = -2 / +2
Query: 471 QFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMV 355
+++CP+C +S C+MS +W+K D ++AA+PMP YQ +MV
Sbjct: 58874 RYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMV 58990
Score = 51.0 bits (105), Expect(4) = 8e-039
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -2 / +1
Query: 573 VCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQ 469
V ++LF+S ++VL CGHTIH +CL EMR H Q
Sbjct: 58684 VFFQFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQ 58788
Score = 29.5 bits (58), Expect(4) = 8e-039
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYL 556
MHH+CP+C E L
Sbjct: 58573 MHHDCPICFEVL 58608
>gb|BP864319.1|BP864319 BP864319 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-69-N21 5',
mRNA sequence
Length = 369
Score = 117 bits (250), Expect(2) = 1e-038
Identities = 40/60 (66%), Positives = 52/60 (86%)
Frame = -2 / +1
Query: 432 MSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 124 MSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 303
Score = 63.8 bits (133), Expect(2) = 1e-038
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -2 / +3
Query: 552 DSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACN 433
DS + I+VL CGHT+HLEC +M H +++CPVC +S C+
Sbjct: 3 DSTRDITVLRCGHTMHLECTKDMGLHNRYTCPVCSKSICD 122
>gb|CA781795.1|CA781795 050D05AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 693
Score = 158 bits (339), Expect = 2e-037
Identities = 54/101 (53%), Positives = 73/101 (72%)
Frame = -2 / +1
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 388 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 567
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKC 289
LD+++ A+ MP+ Y+ K VWILCNDC T+ V FHI+ KC
Sbjct: 568 LDEEIEATAMPSDYRDKKVWILCNDCNDTTEVHFHIIGQKC 690
>gb|BP616432.1|BP616432 BP616432 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-20-A15 3',
mRNA sequence
Length = 457
Score = 149 bits (320), Expect = 7e-035
Identities = 52/92 (56%), Positives = 70/92 (76%)
Frame = -2 / -2
Query: 528 LHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWI 349
L C HT+HLEC +M H +++CPVC +S C M ++ + L ++VAA PMP +Y+ KMVWI
Sbjct: 456 LRCAHTMHLECTKDMGLHNRYTCPVCSKSICYMCNL*RNLMKRVAAYPMPKMYENKMVWI 277
Query: 348 LCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
LCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 276 LCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 181
>gb|BP592325.1|BP592325 BP592325 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-17-O22 3',
mRNA sequence
Length = 426
Score = 142 bits (305), Expect = 8e-033
Identities = 47/75 (62%), Positives = 64/75 (85%)
Frame = -2 / -2
Query: 477 HQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILA 298
H +++CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++A
Sbjct: 422 HNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIA 243
Query: 297 HKCPGCSSYNTRQTR 253
HKC C SYNTRQT+
Sbjct: 242 HKCSSCGSYNTRQTQ 198
>gb|BP668651.1|BP668651 BP668651 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-28-B10 3',
mRNA sequence
Length = 429
Score = 142 bits (305), Expect = 8e-033
Identities = 47/75 (62%), Positives = 64/75 (85%)
Frame = -2 / -1
Query: 477 HQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILA 298
H +++CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++A
Sbjct: 423 HNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIA 244
Query: 297 HKCPGCSSYNTRQTR 253
HKC C SYNTRQT+
Sbjct: 243 HKCSSCGSYNTRQTQ 199
>emb|BX841616.1|CNS09YKN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB20ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1154
Score = 140 bits (300), Expect = 4e-032
Identities = 48/92 (52%), Positives = 67/92 (72%)
Frame = -2 / +3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
M H+CP+C EYLFDS+K +V+ CGHT+H+EC EM +F CP+C RS +MS WQ+
Sbjct: 759 MRHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQR 938
Query: 411 LDQQVAASPMPAIYQKKMVWILCNDCGVTSNV 316
LD+++ A+ MP+ Y+ K VWILC+DC T+ V
Sbjct: 939 LDEEIEATSMPSDYRDKKVWILCHDCNDTTEV 1034
>ref|NM_116162.4| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT3G62970 mRNA, complete cds
Length = 1088
Score = 100 bits (213), Expect(2) = 2e-031
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = -2 / +3
Query: 585 HNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLD 406
++CPVC EYLFDS+KA V+ CGHT+H++C +M Q+ CP+C +S +MS W LD
Sbjct: 504 NSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPICAKSMVDMSPSWHLLD 683
Query: 405 QQVAASPMPAIYQ 367
+++A+ MP Y+
Sbjct: 684 FEISATEMPVEYK 722
Score = 57.0 bits (118), Expect(2) = 2e-031
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = -2 / +3
Query: 357 VWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQ 259
V ILCNDC S FHIL HKC C SYNTR+
Sbjct: 729 VSILCNDCNKGSKAMFHILGHKCSDCGSYNTRR 827
>gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complete cds
Length = 831
Score = 100 bits (213), Expect(2) = 2e-031
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = -2 / +1
Query: 585 HNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLD 406
++CPVC EYLFDS+KA V+ CGHT+H++C +M Q+ CP+C +S +MS W LD
Sbjct: 469 NSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPICAKSMVDMSPSWHLLD 648
Query: 405 QQVAASPMPAIYQ 367
+++A+ MP Y+
Sbjct: 649 FEISATEMPVEYK 687
Score = 57.0 bits (118), Expect(2) = 2e-031
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = -2 / +1
Query: 357 VWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQ 259
V ILCNDC S FHIL HKC C SYNTR+
Sbjct: 694 VSILCNDCNKGSKAMFHILGHKCSDCGSYNTRR 792
>gb|AV795888.1|AV795888 AV795888 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-19-K04 3',
mRNA sequence
Length = 428
Score = 137 bits (293), Expect = 4e-031
Identities = 46/71 (64%), Positives = 61/71 (85%)
Frame = -2 / -1
Query: 465 SCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCP 286
+CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC
Sbjct: 428 TCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCS 249
Query: 285 GCSSYNTRQTR 253
C SYNTRQT+
Sbjct: 248 SCGSYNTRQTQ 216
>gb|BP782779.1|BP782779 BP782779 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-83-I03 3',
mRNA sequence
Length = 411
Score = 137 bits (293), Expect = 4e-031
Identities = 46/71 (64%), Positives = 61/71 (85%)
Frame = -2 / -2
Query: 465 SCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCP 286
+CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC
Sbjct: 410 TCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCS 231
Query: 285 GCSSYNTRQTR 253
C SYNTRQT+
Sbjct: 230 SCGSYNTRQTQ 198
>gb|BP603951.1|BP603951 BP603951 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-60-M03 3',
mRNA sequence
Length = 391
Score = 136 bits (292), Expect = 5e-031
Identities = 46/70 (65%), Positives = 60/70 (85%)
Frame = -2 / -2
Query: 462 CPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPG 283
CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC
Sbjct: 390 CPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSS 211
Query: 282 CSSYNTRQTR 253
C SYNTRQT+
Sbjct: 210 CGSYNTRQTQ 181
>gb|BP670913.1|BP670913 BP670913 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-37-B19 3',
mRNA sequence
Length = 431
Score = 135 bits (289), Expect = 1e-030
Identities = 44/75 (58%), Positives = 64/75 (85%)
Frame = -2 / -1
Query: 477 HQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILA 298
H +++CPVC +S C+MS++W+KLD++VAA PMP +Y+ +MVWILC+DCG +NV+FH++A
Sbjct: 425 HNRYTCPVCSQSICDMSNLWKKLDEEVAAYPMPKMYENQMVWILCHDCGSNTNVRFHLIA 246
Query: 297 HKCPGCSSYNTRQTR 253
HKC C SY+TRQT+
Sbjct: 245 HKCRSCGSYHTRQTQ 201
>gb|AI998792.1|AI998792 701546931 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701546931, mRNA sequence
Length = 585
Score = 134 bits (287), Expect = 2e-030
Identities = 47/91 (51%), Positives = 63/91 (69%)
Frame = -2 / -1
Query: 534 SVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMV 355
+V+ CGHT+H+EC EM + CP+C RS +MS WQ+LD+++ A+ MP+ Y+ K V
Sbjct: 579 NVMKCGHTMHVECYNEMIKRDKICCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKV 400
Query: 354 WILCNDCGVTSNVQFHILAHKCPGCSSYNTR 262
WILCNDC T+ V FHI+ KC C SYNTR
Sbjct: 399 WILCNDCNDTTEVHFHIIGQKCGHCRSYNTR 307
>gb|BP650517.1|BP650517 BP650517 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-84-K12 3',
mRNA sequence
Length = 412
Score = 134 bits (287), Expect = 2e-030
Identities = 46/84 (54%), Positives = 66/84 (78%)
Frame = -2 / -3
Query: 504 LECLYEMRAHQQFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVT 325
LEC +M H +++CPVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCN+ +
Sbjct: 410 LECTKDMGLHNRYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNELRLK 231
Query: 324 SNVQFHILAHKCPGCSSYNTRQTR 253
+V+FH++AHK C SYNTRQT+
Sbjct: 230 HDVRFHLIAHKSSSCGSYNTRQTQ 159
>emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL52ZF09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 947
Score = 96.8 bits (205), Expect(2) = 3e-030
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = -2 / +2
Query: 585 HNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQKLD 406
++CPVC EYLFDS+KA V+ CGHT+H++C +M Q+ CP+C +S +MS W LD
Sbjct: 473 NSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQYRCPICAKSMVDMSPSWHLLD 652
Query: 405 QQVAASPMPAIYQ 367
++ MP Y+
Sbjct: 653 FEIKKKKMPVEYK 691
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = -2 / +2
Query: 357 VWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQ 259
V ILCNDC S FHIL HKC C SYNTR+
Sbjct: 698 VSILCNDCNKGSKAMFHILGHKCSDCGSYNTRR 796
>gb|BP588580.1|BP588580 BP588580 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-46-M06 3',
mRNA sequence
Length = 406
Score = 132 bits (283), Expect = 9e-030
Identities = 45/69 (65%), Positives = 59/69 (85%)
Frame = -2 / -3
Query: 459 PVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGC 280
PVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C
Sbjct: 404 PVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSC 225
Query: 279 SSYNTRQTR 253
SYNTRQT+
Sbjct: 224 GSYNTRQTQ 198
>gb|BP589092.1|BP589092 BP589092 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-48-J16 3',
mRNA sequence
Length = 410
Score = 132 bits (283), Expect = 9e-030
Identities = 45/69 (65%), Positives = 59/69 (85%)
Frame = -2 / -2
Query: 459 PVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGC 280
PVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C
Sbjct: 409 PVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSC 230
Query: 279 SSYNTRQTR 253
SYNTRQT+
Sbjct: 229 GSYNTRQTQ 203
>gb|CF774264.1|CF774264 AG_FSL_30B06 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 30B06, mRNA sequence
Length = 399
Score = 127 bits (272), Expect(2) = 9e-030
Identities = 42/78 (53%), Positives = 60/78 (76%)
Frame = -2 / +3
Query: 591 MHHNCPVCMEYLFDSMKAISVLHCGHTIHLECLYEMRAHQQFSCPVCLRSACNMSDIWQK 412
MHH+ P+C E+LF+S ++VL CGHTIH +CL EMR H Q++CP+C +S C+MS +W+K
Sbjct: 123 MHHDWPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQYACPLCSKSVCDMSKVWEK 302
Query: 411 LDQQVAASPMPAIYQKKM 358
D ++AA+PMP YQ +M
Sbjct: 303 FDMEIAATPMPEPYQNRM 356
Score = 24.4 bits (47), Expect(2) = 9e-030
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2 / +1
Query: 357 VWILCNDCGVTS 322
V ILCNDCG S
Sbjct: 358 VQILCNDCGEES 393
>gb|AV537130.1|AV537130 AV537130 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0935R 5', mRNA
sequence
Length = 322
Score = 128 bits (274), Expect = 2e-028
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = -2 / +2
Query: 465 SCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCP 286
+CP+C +S C+MS +W+K D ++AA+PMP YQ +MV ILCNDCG + VQ+H++A KCP
Sbjct: 2 ACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDCGKKAEVQYHVVAQKCP 181
Query: 285 GCSSYNTRQTRG 250
C SYNTRQTRG
Sbjct: 182 NCKSYNTRQTRG 217
>gb|BP671104.1|BP671104 BP671104 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-37-P11 3',
mRNA sequence
Length = 425
Score = 98.2 bits (208), Expect(2) = 5e-028
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = -2 / -3
Query: 402 QVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
+VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 348 RVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 199
Score = 48.3 bits (99), Expect(2) = 5e-028
Identities = 13/27 (48%), Positives = 24/27 (88%)
Frame = -2 / -1
Query: 477 HQQFSCPVCLRSACNMSDIWQKLDQQV 397
H +++CPVC +S C+MS++W+KLD+++
Sbjct: 422 HNRYTCPVCSKSICDMSNLWKKLDEEL 342
>gb|BP634909.1|BP634909 BP634909 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-36-F11 3',
mRNA sequence
Length = 383
Score = 122 bits (260), Expect = 1e-026
Identities = 41/62 (66%), Positives = 54/62 (87%)
Frame = -2 / -1
Query: 438 CNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQ 259
C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQ
Sbjct: 383 CDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQ 204
Query: 258 TR 253
T+
Sbjct: 203 TQ 198
>gb|BP619312.1|BP619312 BP619312 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-31-O09 3',
mRNA sequence
Length = 437
Score = 97.3 bits (206), Expect(2) = 1e-026
Identities = 34/50 (68%), Positives = 41/50 (82%)
Frame = -2 / -2
Query: 402 QVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYNTRQTR 253
+VA PMP IY+ KMVWILCNDCG +NV+FH++AHKC C SYNTRQT+
Sbjct: 370 RVAPYPMPKIYENKMVWILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQ 221
Score = 44.1 bits (90), Expect(2) = 1e-026
Identities = 12/24 (50%), Positives = 22/24 (91%)
Frame = -2 / -3
Query: 468 FSCPVCLRSACNMSDIWQKLDQQV 397
++CPVC +S C+MS++W+KLD+++
Sbjct: 435 YTCPVCSKSICDMSNLWKKLDEEL 364
>gb|AV793724.1|AV793724 AV793724 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-09-P06 3',
mRNA sequence
Length = 436
Score = 115 bits (246), Expect(2) = 4e-026
Identities = 37/61 (60%), Positives = 53/61 (86%)
Frame = -2 / -2
Query: 471 QFSCPVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHK 292
+++CPVC +S C+M ++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHK
Sbjct: 435 RYTCPVCSKSICDMCNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHK 256
Query: 291 C 289
C
Sbjct: 255 C 253
Score = 24.4 bits (47), Expect(2) = 4e-026
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 282 CSSYNTRQTR 253
C SYNTRQT+
Sbjct: 245 CGSYNTRQTQ 216
>gb|BP600359.1|BP600359 BP600359 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-45-N08 3',
mRNA sequence
Length = 402
Score = 119 bits (254), Expect = 9e-026
Identities = 41/65 (63%), Positives = 55/65 (84%)
Frame = -2 / -3
Query: 447 RSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQFHILAHKCPGCSSYN 268
+S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+FH++AHKC SYN
Sbjct: 397 KSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHKCSSFGSYN 218
Query: 267 TRQTR 253
TRQT+
Sbjct: 217 TRQTQ 203
>gb|BP603037.1|BP603037 BP603037 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-57-C13 3',
mRNA sequence
Length = 427
Score = 94.1 bits (199), Expect(2) = 1e-025
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = -2 / -2
Query: 459 PVCLRSACNMSDIWQKLDQQVAASPMPAIYQKKMVWILCNDCGVTSNVQF 310
PVC +S C+MS++W+KLD++VAA PMP +Y+ KMVWILCNDCG +NV+F
Sbjct: 426 PVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRF 277
Score = 44.1 bits (90), Expect(2) = 1e-025
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -2 / -1
Query: 312 FHILAHKCPGCSSYNTRQTR 253
FH++AHKC C SYNTRQT+
Sbjct: 280 FHLIAHKCSSCGSYNTRQTQ 221
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,421,531,473
Number of Sequences: 1013581
Number of extensions: 21123871
Number of successful extensions: 233590
Number of sequences better than 1.0e-020: 72
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 34859900235
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)