TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX506996.1| Sequence 1691 from Patent WO0216655 183 5e-045
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 183 5e-045
emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4... 183 5e-045
emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosom... 183 5e-045
ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G1... 183 5e-045
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 183 5e-045
dbj|AP002048.1| Arabidopsis thaliana genomic DNA, chromosom... 182 7e-045
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 182 7e-045
ref|NM_113355.1| Arabidopsis thaliana protein binding AT3G2... 182 7e-045
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 182 7e-045
emb|CR395125.1| Arabidopsis thaliana T-DNA flanking sequenc... 176 6e-043
emb|CR395124.1| Arabidopsis thaliana T-DNA flanking sequenc... 173 5e-042
emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome... 172 1e-041
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 172 1e-041
ref|NM_117983.2| Arabidopsis thaliana protein binding AT4G1... 172 1e-041
dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosom... 167 2e-040
ref|NM_113179.3| Arabidopsis thaliana protein binding / str... 167 2e-040
gb|BX841161.1|BX841161 BX841161 Arabidopsis thaliana Flower... 127 6e-033
gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis tha... 128 1e-031
gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis tha... 128 1e-031
ref|NM_104924.1| Arabidopsis thaliana LRX2 (LEUCINE-RICH RE... 128 1e-031
emb|AX507698.1| Sequence 2393 from Patent WO0216655 128 1e-031
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 128 1e-028
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 128 1e-028
emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosom... 106 1e-026
emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome ... 106 1e-026
ref|NM_118978.2| Arabidopsis thaliana ubiquitin-protein lig... 106 1e-026
gb|AY096640.1| Arabidopsis thaliana At4g28370 mRNA sequence 106 1e-026
ref|NM_118979.1| Arabidopsis thaliana protein binding AT4G2... 106 1e-026
gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V ma... 122 1e-026
emb|BX824256.1|CNS0A7QT Arabidopsis thaliana Full-length cD... 122 1e-026
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 122 1e-026
gb|DQ056690.1| Arabidopsis thaliana leucine-rich repeat fam... 122 1e-026
ref|NM_122466.1| Arabidopsis thaliana protein binding AT5G2... 122 1e-026
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 122 1e-026
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 101 2e-026
emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome ... 101 2e-026
ref|NM_119558.1| Arabidopsis thaliana protein binding AT4G3... 101 2e-026
dbj|AP000735.1| Arabidopsis thaliana genomic DNA, chromosom... 104 1e-025
ref|NM_112788.2| Arabidopsis thaliana protein binding / str... 104 1e-025
gb|AY091043.1| Arabidopsis thaliana unknown protein (At3g19... 104 1e-025
gb|AC006438.4| Arabidopsis thaliana chromosome 2 clone F19G... 103 3e-025
ref|NM_127148.1| Arabidopsis thaliana structural constituen... 103 3e-025
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 117 3e-025
gb|AY026364.1| Arabidopsis thaliana leucine-rich repeat/ext... 117 3e-025
gb|G72110.1|G72110 At-8.5BJ-540 Arabidopsis genomic DNA (B.... 117 3e-025
emb|AX507988.1| Sequence 2683 from Patent WO0216655 117 3e-025
gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F... 117 3e-025
ref|NM_101076.1| Arabidopsis thaliana LRX1 (LEUCINE-RICH RE... 117 3e-025
gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21... 100 7e-025
ref|NM_103837.1| Arabidopsis thaliana structural constituen... 100 7e-025
emb|CR379193.1| Arabidopsis thaliana transposon insertion S... 108 2e-022
emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosom... 100 3e-022
emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, **... 100 3e-022
ref|NM_119068.2| Arabidopsis thaliana protein binding AT4G2... 100 4e-022
gb|AY091036.1| Arabidopsis thaliana putative extensin (At4g... 100 4e-022
gb|AY085352.1| Arabidopsis thaliana clone 147694 mRNA, comp... 100 4e-022
gb|AY117248.1| Arabidopsis thaliana putative extensin (At4g... 100 4e-022
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 103 7e-021
>emb|AX506996.1| Sequence 1691 from Patent WO0216655
Length = 2283
Score = 183 bits (394), Expect = 5e-045
Identities = 67/131 (51%), Positives = 96/131 (73%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M ++EQL+VAHN L+
Sbjct: 772 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 951
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL +P DDR+NC+ GRP QR +C +FL
Sbjct: 952 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLS 1131
Query: 362 QPRVRCDAHGC 394
+P V C + C
Sbjct: 1132 RPPVNCGSFSC 1164
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 183 bits (394), Expect = 5e-045
Identities = 67/131 (51%), Positives = 96/131 (73%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M ++EQL+VAHN L+
Sbjct: 3672119 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 3672298
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL +P DDR+NC+ GRP QR +C +FL
Sbjct: 3672299 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLS 3672478
Query: 362 QPRVRCDAHGC 394
+P V C + C
Sbjct: 3672479 RPPVNCGSFSC 3672511
Score = 172 bits (370), Expect = 1e-041
Identities = 64/131 (48%), Positives = 91/131 (69%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L ++I + +G +SC+P +IG+L + V D SF + G+LP +IG M ++EQL+VAHNR +
Sbjct: 6190440 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 6190261
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP ++C LP L+NFT+SYNFF GEP CL +P DDR+NC+ RP QR +C +F
Sbjct: 6190260 GKIPATICQLPRLENFTFSYNFFTGEPPVCLGLPGFDDRRNCLPARPAQRSPGQCAAFSS 6190081
Query: 362 QPRVRCDAHGC 394
P V C + GC
Sbjct: 6190080 LPPVDCGSFGC 6190048
Score = 106 bits (227), Expect = 5e-022
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 9953004 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 9952825
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 9952824 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 9952735
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence
(ESSA project)
Length = 95432
Score = 183 bits (394), Expect = 5e-045
Identities = 67/131 (51%), Positives = 96/131 (73%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M ++EQL+VAHN L+
Sbjct: 30143 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 30322
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL +P DDR+NC+ GRP QR +C +FL
Sbjct: 30323 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLS 30502
Query: 362 QPRVRCDAHGC 394
+P V C + C
Sbjct: 30503 RPPVNCGSFSC 30535
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36
Length = 199634
Score = 183 bits (394), Expect = 5e-045
Identities = 67/131 (51%), Positives = 96/131 (73%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M ++EQL+VAHN L+
Sbjct: 46122 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 46301
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL +P DDR+NC+ GRP QR +C +FL
Sbjct: 46302 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLS 46481
Query: 362 QPRVRCDAHGC 394
+P V C + C
Sbjct: 46482 RPPVNCGSFSC 46514
>ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G13340 mRNA, complete cds
Length = 2448
Score = 183 bits (394), Expect = 5e-045
Identities = 67/131 (51%), Positives = 96/131 (73%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M ++EQL+VAHN L+
Sbjct: 772 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 951
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL +P DDR+NC+ GRP QR +C +FL
Sbjct: 952 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLS 1131
Query: 362 QPRVRCDAHGC 394
+P V C + C
Sbjct: 1132 RPPVNCGSFSC 1164
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 183 bits (394), Expect = 5e-045
Identities = 67/131 (51%), Positives = 96/131 (73%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M ++EQL+VAHN L+
Sbjct: 7759377 LNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLS 7759556
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL +P DDR+NC+ GRP QR +C +FL
Sbjct: 7759557 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLS 7759736
Query: 362 QPRVRCDAHGC 394
+P V C + C
Sbjct: 7759737 RPPVNCGSFSC 7759769
Score = 172 bits (370), Expect = 1e-041
Identities = 64/131 (48%), Positives = 91/131 (69%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L ++I + +G +SC+P +IG+L + V D SF + G+LP +IG M ++EQL+VAHNR +
Sbjct: 10277695 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 10277516
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP ++C LP L+NFT+SYNFF GEP CL +P DDR+NC+ RP QR +C +F
Sbjct: 10277515 GKIPATICQLPRLENFTFSYNFFTGEPPVCLGLPGFDDRRNCLPARPAQRSPGQCAAFSS 10277336
Query: 362 QPRVRCDAHGC 394
P V C + GC
Sbjct: 10277335 LPPVDCGSFGC 10277303
Score = 106 bits (227), Expect = 5e-022
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 14040235 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 14040056
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 14040055 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 14039966
>dbj|AP002048.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXP5
Length = 35471
Score = 182 bits (393), Expect = 7e-045
Identities = 67/131 (51%), Positives = 95/131 (72%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M +EQL+VAHN L+
Sbjct: 28690 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 28511
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL + DDR+NC+ GRP QR +C +FL
Sbjct: 28510 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLS 28331
Query: 362 QPRVRCDAHGC 394
+P V C + GC
Sbjct: 28330 RPSVDCGSFGC 28298
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 182 bits (393), Expect = 7e-045
Identities = 67/131 (51%), Positives = 95/131 (72%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M +EQL+VAHN L+
Sbjct: 8843835 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 8843656
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL + DDR+NC+ GRP QR +C +FL
Sbjct: 8843655 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLS 8843476
Query: 362 QPRVRCDAHGC 394
+P V C + GC
Sbjct: 8843475 RPSVDCGSFGC 8843443
Score = 167 bits (360), Expect = 2e-040
Identities = 64/122 (52%), Positives = 90/122 (73%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L+++I+ NS ++ C+ EIG L +L V D+S+ ++ G+LP+TIG+M++LEQL++AHN+ +
Sbjct: 8013882 LHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFS 8013703
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPES+C LP L+NFTYSYNFF GEP CL + DDR+NC+ RP QR EC SF
Sbjct: 8013702 GYIPESICRLPRLENFTYSYNFFSGEPPACLRLQEFDDRRNCLPSRPMQRSLAECKSFSS 8013523
Query: 362 QP 367
P
Sbjct: 8013522 YP 8013517
Score = 104 bits (221), Expect = 3e-021
Identities = 36/91 (39%), Positives = 58/91 (63%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ + + +S C+P EIG L + V D S G+LP T+ + +EQ+D ++N+
Sbjct: 6534037 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 6533858
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G + +++C LP L NFT+SYNFF GE C+
Sbjct: 6533857 GFVTDNICKLPKLSNFTFSYNFFNGEAQSCV 6533765
>ref|NM_113355.1| Arabidopsis thaliana protein binding AT3G24480 mRNA, complete cds
Length = 1485
Score = 182 bits (393), Expect = 7e-045
Identities = 67/131 (51%), Positives = 95/131 (72%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M +EQL+VAHN L+
Sbjct: 796 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 975
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL + DDR+NC+ GRP QR +C +FL
Sbjct: 976 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLS 1155
Query: 362 QPRVRCDAHGC 394
+P V C + GC
Sbjct: 1156 RPSVDCGSFGC 1188
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 182 bits (393), Expect = 7e-045
Identities = 67/131 (51%), Positives = 95/131 (72%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M +EQL+VAHN L+
Sbjct: 8901850 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 8901671
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL + DDR+NC+ GRP QR +C +FL
Sbjct: 8901670 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLS 8901491
Query: 362 QPRVRCDAHGC 394
+P V C + GC
Sbjct: 8901490 RPSVDCGSFGC 8901458
Score = 167 bits (360), Expect = 2e-040
Identities = 64/122 (52%), Positives = 90/122 (73%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L+++I+ NS ++ C+ EIG L +L V D+S+ ++ G+LP+TIG+M++LEQL++AHN+ +
Sbjct: 8063750 LHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFS 8063571
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPES+C LP L+NFTYSYNFF GEP CL + DDR+NC+ RP QR EC SF
Sbjct: 8063570 GYIPESICRLPRLENFTYSYNFFSGEPPACLRLQEFDDRRNCLPSRPMQRSLAECKSFSS 8063391
Query: 362 QP 367
P
Sbjct: 8063390 YP 8063385
Score = 104 bits (221), Expect = 3e-021
Identities = 36/91 (39%), Positives = 58/91 (63%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ + + +S C+P EIG L + V D S G+LP T+ + +EQ+D ++N+
Sbjct: 6561261 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 6561082
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G + +++C LP L NFT+SYNFF GE C+
Sbjct: 6561081 GFVTDNICKLPKLSNFTFSYNFFNGEAQSCV 6560989
>emb|CR395125.1| Arabidopsis thaliana T-DNA flanking sequence GK-017A08-026160,
genomic survey sequence
Length = 530
Score = 176 bits (379), Expect = 6e-043
Identities = 65/126 (51%), Positives = 92/126 (73%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M +EQL+VAHN L+
Sbjct: 386 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 207
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL + DDR+NC+ GRP QR +C +FL
Sbjct: 206 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLS 27
Query: 362 QPRVRC 379
+P V C
Sbjct: 26 RPSVDC 9
>emb|CR395124.1| Arabidopsis thaliana T-DNA flanking sequence GK-017A08-026159,
genomic survey sequence
Length = 509
Score = 173 bits (372), Expect = 5e-042
Identities = 64/124 (51%), Positives = 91/124 (73%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G++SC+P +IG+L + V D+SF + G LP+++G M +EQL+VAHN L+
Sbjct: 375 LNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLS 196
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP L+NFTYSYNFF GE CL + DDR+NC+ GRP QR +C +FL
Sbjct: 195 GKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCSAFLS 16
Query: 362 QPRV 373
+P V
Sbjct: 15 RPSV 4
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
Length = 94301
Score = 172 bits (370), Expect = 1e-041
Identities = 64/131 (48%), Positives = 91/131 (69%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L ++I + +G +SC+P +IG+L + V D SF + G+LP +IG M ++EQL+VAHNR +
Sbjct: 36542 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 36363
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP ++C LP L+NFT+SYNFF GEP CL +P DDR+NC+ RP QR +C +F
Sbjct: 36362 GKIPATICQLPRLENFTFSYNFFTGEPPVCLGLPGFDDRRNCLPARPAQRSPGQCAAFSS 36183
Query: 362 QPRVRCDAHGC 394
P V C + GC
Sbjct: 36182 LPPVDCGSFGC 36150
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
Length = 199075
Score = 172 bits (370), Expect = 1e-041
Identities = 64/131 (48%), Positives = 91/131 (69%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L ++I + +G +SC+P +IG+L + V D SF + G+LP +IG M ++EQL+VAHNR +
Sbjct: 55823 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 55644
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP ++C LP L+NFT+SYNFF GEP CL +P DDR+NC+ RP QR +C +F
Sbjct: 55643 GKIPATICQLPRLENFTFSYNFFTGEPPVCLGLPGFDDRRNCLPARPAQRSPGQCAAFSS 55464
Query: 362 QPRVRCDAHGC 394
P V C + GC
Sbjct: 55463 LPPVDCGSFGC 55431
>ref|NM_117983.2| Arabidopsis thaliana protein binding AT4G18670 mRNA, complete cds
Length = 2976
Score = 172 bits (370), Expect = 1e-041
Identities = 64/131 (48%), Positives = 91/131 (69%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L ++I + +G +SC+P +IG+L + V D SF + G+LP +IG M ++EQL+VAHNR +
Sbjct: 808 LEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFS 987
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP ++C LP L+NFT+SYNFF GEP CL +P DDR+NC+ RP QR +C +F
Sbjct: 988 GKIPATICQLPRLENFTFSYNFFTGEPPVCLGLPGFDDRRNCLPARPAQRSPGQCAAFSS 1167
Query: 362 QPRVRCDAHGC 394
P V C + GC
Sbjct: 1168 LPPVDCGSFGC 1200
>dbj|AB022223.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MWI23
Length = 77273
Score = 167 bits (360), Expect = 2e-040
Identities = 64/122 (52%), Positives = 90/122 (73%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L+++I+ NS ++ C+ EIG L +L V D+S+ ++ G+LP+TIG+M++LEQL++AHN+ +
Sbjct: 52957 LHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFS 52778
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPES+C LP L+NFTYSYNFF GEP CL + DDR+NC+ RP QR EC SF
Sbjct: 52777 GYIPESICRLPRLENFTYSYNFFSGEPPACLRLQEFDDRRNCLPSRPMQRSLAECKSFSS 52598
Query: 362 QP 367
P
Sbjct: 52597 YP 52592
>ref|NM_113179.3| Arabidopsis thaliana protein binding / structural constituent of cell
wall AT3G22800 mRNA, complete cds
Length = 1669
Score = 167 bits (360), Expect = 2e-040
Identities = 64/122 (52%), Positives = 90/122 (73%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L+++I+ NS ++ C+ EIG L +L V D+S+ ++ G+LP+TIG+M++LEQL++AHN+ +
Sbjct: 814 LHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFS 993
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IPES+C LP L+NFTYSYNFF GEP CL + DDR+NC+ RP QR EC SF
Sbjct: 994 GYIPESICRLPRLENFTYSYNFFSGEPPACLRLQEFDDRRNCLPSRPMQRSLAECKSFSS 1173
Query: 362 QP 367
P
Sbjct: 1174 YP 1179
>gb|BX841161.1|BX841161 BX841161 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB18ZG09 5PRIM, mRNA sequence
Length = 1005
Score = 127 bits (271), Expect(2) = 6e-033
Identities = 47/87 (54%), Positives = 70/87 (80%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L+++I+ NS ++ C+ EIG L +L V D+S ++ G+LP+TIG+M++LEQL++AHN+ +
Sbjct: 648 LHEIIITNSQLTGCLNREIGLLNQLTVFDVSNNNLVGSLPETIGDMKSLEQLNIAHNKFS 827
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEP 262
G IP+S+C LP L+NFTYSYNFF GEP
Sbjct: 828 GYIPDSICRLPRLENFTYSYNFFSGEP 908
Score = 35.9 bits (72), Expect(2) = 6e-033
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2 / +1
Query: 272 LEVPRVDDRQNCIAGRPDQRPGEECISFL 358
L + VDDR+NC+ RP QR EC FL
Sbjct: 919 LRLQDVDDRRNCLPSRPLQRALAECKPFL 1005
>gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis thaliana BAC T3P18 from Chromosome
1, complete sequence
Length = 97054
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL N ++ C+PP+IG L + V D+SF ++G LP +IGNM++LEQL+VA+NR
Sbjct: 4656 LNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFT 4835
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IP S+C L +L+NFTYS NFF G+ RC+
Sbjct: 4836 GVIPSSICQLSNLENFTYSSNFFTGDAPRCV 4928
Score = 29.9 bits (59), Expect(2) = 1e-031
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2 / +3
Query: 287 VDDRQNCIAGRPDQRPGEECIS 352
V+ NCI G+ DQR +EC S
Sbjct: 4953 VNGSMNCIDGKEDQRSSKECSS 5018
>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I,
complete sequence
Length = 86372
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL N ++ C+PP+IG L + V D+SF ++G LP +IGNM++LEQL+VA+NR
Sbjct: 80065 LNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFT 80244
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IP S+C L +L+NFTYS NFF G+ RC+
Sbjct: 80245 GVIPSSICQLSNLENFTYSSNFFTGDAPRCV 80337
Score = 29.9 bits (59), Expect(2) = 1e-031
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 287 VDDRQNCIAGRPDQRPGEECIS 352
V+ NCI G+ DQR +EC S
Sbjct: 80362 VNGSMNCIDGKEDQRSSKECSS 80427
>ref|NM_104924.1| Arabidopsis thaliana LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2);
structural constituent of cell wall AT1G62440 (LRX2)
mRNA, complete cds
Length = 2481
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL N ++ C+PP+IG L + V D+SF ++G LP +IGNM++LEQL+VA+NR
Sbjct: 856 LNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFT 1035
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IP S+C L +L+NFTYS NFF G+ RC+
Sbjct: 1036 GVIPSSICQLSNLENFTYSSNFFTGDAPRCV 1128
Score = 29.9 bits (59), Expect(2) = 1e-031
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 287 VDDRQNCIAGRPDQRPGEECIS 352
V+ NCI G+ DQR +EC S
Sbjct: 1153 VNGSMNCIDGKEDQRSSKECSS 1218
>emb|AX507698.1| Sequence 2393 from Patent WO0216655
Length = 2361
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL N ++ C+PP+IG L + V D+SF ++G LP +IGNM++LEQL+VA+NR
Sbjct: 736 LNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFT 915
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IP S+C L +L+NFTYS NFF G+ RC+
Sbjct: 916 GVIPSSICQLSNLENFTYSSNFFTGDAPRCV 1008
Score = 29.9 bits (59), Expect(2) = 1e-031
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 287 VDDRQNCIAGRPDQRPGEECIS 352
V+ NCI G+ DQR +EC S
Sbjct: 1033 VNGSMNCIDGKEDQRSSKECSS 1098
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 128 bits (275), Expect = 1e-028
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL N ++ C+PP+IG L + V D+SF ++G LP +IGNM++LEQL+VA+NR
Sbjct: 7354984 LNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFT 7355163
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IP S+C L +L+NFTYS NFF G+ RC+
Sbjct: 7355164 GVIPSSICQLSNLENFTYSSNFFTGDAPRCV 7355256
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 128 bits (275), Expect = 1e-028
Identities = 48/91 (52%), Positives = 68/91 (74%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL N ++ C+PP+IG L + V D+SF ++G LP +IGNM++LEQL+VA+NR
Sbjct: 23117333 LNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFT 23117512
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IP S+C L +L+NFTYS NFF G+ RC+
Sbjct: 23117513 GVIPSSICQLSNLENFTYSSNFFTGDAPRCV 23117605
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 4070887 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 4071066
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 4071067 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 4071156
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
Length = 199749
Score = 106 bits (227), Expect(2) = 1e-026
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 155712 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 155533
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 155532 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 155443
Score = 35.0 bits (70), Expect(2) = 1e-026
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / -1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DDR NC+ +P QRP + C + L P
Sbjct: 155415 IDDRYNCLPDKPLQRPQKVCDAVLEHP 155335
>emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project)
Length = 93695
Score = 106 bits (227), Expect(2) = 1e-026
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 17795 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 17616
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 17615 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 17526
Score = 35.0 bits (70), Expect(2) = 1e-026
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / -1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DDR NC+ +P QRP + C + L P
Sbjct: 17498 IDDRYNCLPDKPLQRPQKVCDAVLEHP 17418
>ref|NM_118978.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT4G28370 mRNA, complete cds
Length = 3613
Score = 106 bits (227), Expect(2) = 1e-026
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 2176 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 1997
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 1996 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 1907
Score = 35.0 bits (70), Expect(2) = 1e-026
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / -1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DDR NC+ +P QRP + C + L P
Sbjct: 1879 IDDRYNCLPDKPLQRPQKVCDAVLEHP 1799
>gb|AY096640.1| Arabidopsis thaliana At4g28370 mRNA sequence
Length = 2333
Score = 106 bits (227), Expect(2) = 1e-026
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 1220 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 1041
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 1040 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 951
Score = 35.0 bits (70), Expect(2) = 1e-026
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / -1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DDR NC+ +P QRP + C + L P
Sbjct: 923 IDDRYNCLPDKPLQRPQKVCDAVLEHP 843
>ref|NM_118979.1| Arabidopsis thaliana protein binding AT4G28380 mRNA, complete cds
Length = 1176
Score = 106 bits (227), Expect(2) = 1e-026
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+NS +S C+PPE+G L KL VLD+S+ S+ G +P ++ + LEQL++ HN
Sbjct: 703 LEELLLINSSLSGCLPPEVGYLYKLRVLDMSYNSLVGPVPYSLAGLGHLEQLNLEHNMFT 882
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G +P VC LP L N T SYN+F E C
Sbjct: 883 GTVPLGVCVLPSLLNVTVSYNYFSEEEGIC 972
Score = 35.0 bits (70), Expect(2) = 1e-026
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2 / +1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DDR NC+ +P QRP + C + L P
Sbjct: 1000 IDDRYNCLPDKPLQRPQKVCDAVLEHP 1080
>gb|AC006601.1|AC006601 Arabidopsis thaliana chromosome V map near 60.5 cM, complete sequence
Length = 110684
Score = 122 bits (260), Expect = 1e-026
Identities = 50/122 (40%), Positives = 74/122 (60%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL+++G+ SCIP ++G L + VLD+S+ + G LP ++G M LE L+V N L+
Sbjct: 52698 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 52877
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IP+ +C L L++F Y N+F GEP C + + NC DQR EC FL
Sbjct: 52878 GLIPDELCSLEKLRDFRYGSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLS 53057
Query: 362 QP 367
+P
Sbjct: 53058 KP 53063
>emb|BX824256.1|CNS0A7QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH34ZA06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1579
Score = 122 bits (260), Expect = 1e-026
Identities = 50/122 (40%), Positives = 79/122 (64%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L+++I+ NS ++ C+ EIG +L V D+S ++ G+LP+TIG++++LEQ ++AH + +
Sbjct: 776 LHEIIMTNSQLTGCLNREIGLRNQLTVFDVSHNNLVGSLPETIGDIKSLEQ*NIAHKKFS 955
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
IP+S+C LP L+N T SYNFF P CL + + DR+NC+ R Q +C SF
Sbjct: 956 RYIPQSICRLPRLENLT*SYNFFSAPPPACLTLQQFHDRRNCLP*RQMQWYLAQCKSFSS 1135
Query: 362 QP 367
P
Sbjct: 1136 YP 1141
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 122 bits (260), Expect = 1e-026
Identities = 50/122 (40%), Positives = 74/122 (60%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL+++G+ SCIP ++G L + VLD+S+ + G LP ++G M LE L+V N L+
Sbjct: 8385281 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 8385460
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IP+ +C L L++F Y N+F GEP C + + NC DQR EC FL
Sbjct: 8385461 GLIPDELCSLEKLRDFRYGSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLS 8385640
Query: 362 QP 367
+P
Sbjct: 8385641 KP 8385646
>gb|DQ056690.1| Arabidopsis thaliana leucine-rich repeat family protein (At5g25550)
mRNA, complete cds
Length = 1302
Score = 122 bits (260), Expect = 1e-026
Identities = 50/122 (40%), Positives = 74/122 (60%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL+++G+ SCIP ++G L + VLD+S+ + G LP ++G M LE L+V N L+
Sbjct: 730 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 909
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IP+ +C L L++F Y N+F GEP C + + NC DQR EC FL
Sbjct: 910 GLIPDELCSLEKLRDFRYGSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLS 1089
Query: 362 QP 367
+P
Sbjct: 1090 KP 1095
>ref|NM_122466.1| Arabidopsis thaliana protein binding AT5G25550 mRNA, complete cds
Length = 1302
Score = 122 bits (260), Expect = 1e-026
Identities = 50/122 (40%), Positives = 74/122 (60%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL+++G+ SCIP ++G L + VLD+S+ + G LP ++G M LE L+V N L+
Sbjct: 730 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 909
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IP+ +C L L++F Y N+F GEP C + + NC DQR EC FL
Sbjct: 910 GLIPDELCSLEKLRDFRYGSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLS 1089
Query: 362 QP 367
+P
Sbjct: 1090 KP 1095
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 122 bits (260), Expect = 1e-026
Identities = 50/122 (40%), Positives = 74/122 (60%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++IL+++G+ SCIP ++G L + VLD+S+ + G LP ++G M LE L+V N L+
Sbjct: 8894911 LNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLS 8895090
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G IP+ +C L L++F Y N+F GEP C + + NC DQR EC FL
Sbjct: 8895091 GLIPDELCSLEKLRDFRYGSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLS 8895270
Query: 362 QP 367
+P
Sbjct: 8895271 KP 8895276
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 101 bits (215), Expect(2) = 2e-026
Identities = 35/91 (38%), Positives = 60/91 (65%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ +++ + C P EIGKL+ + V D S S G LP + + ++E++D++ N+L
Sbjct: 114620 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 114441
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G +P ++C LP+L N TYSYN+F G+ C+
Sbjct: 114440 GLVPHNICQLPNLVNLTYSYNYFSGQGGSCV 114348
Score = 39.6 bits (80), Expect(2) = 2e-026
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2 / -2
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DD +NC+A RP+QR +EC +++P
Sbjct: 114320 LDDTRNCLASRPEQRSAQECAVVINRP 114240
>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSA project)
Length = 86748
Score = 101 bits (215), Expect(2) = 2e-026
Identities = 35/91 (38%), Positives = 60/91 (65%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ +++ + C P EIGKL+ + V D S S G LP + + ++E++D++ N+L
Sbjct: 65596 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 65417
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G +P ++C LP+L N TYSYN+F G+ C+
Sbjct: 65416 GLVPHNICQLPNLVNLTYSYNYFSGQGGSCV 65324
Score = 39.6 bits (80), Expect(2) = 2e-026
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2 / -3
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DD +NC+A RP+QR +EC +++P
Sbjct: 65296 LDDTRNCLASRPEQRSAQECAVVINRP 65216
>ref|NM_119558.1| Arabidopsis thaliana protein binding AT4G33970 mRNA, complete cds
Length = 2100
Score = 101 bits (215), Expect(2) = 2e-026
Identities = 35/91 (38%), Positives = 60/91 (65%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ +++ + C P EIGKL+ + V D S S G LP + + ++E++D++ N+L
Sbjct: 832 LNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLT 1011
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G +P ++C LP+L N TYSYN+F G+ C+
Sbjct: 1012 GLVPHNICQLPNLVNLTYSYNYFSGQGGSCV 1104
Score = 39.6 bits (80), Expect(2) = 2e-026
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2 / +1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DD +NC+A RP+QR +EC +++P
Sbjct: 1132 LDDTRNCLASRPEQRSAQECAVVINRP 1212
>dbj|AP000735.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13E13
Length = 79186
Score = 104 bits (221), Expect(2) = 1e-025
Identities = 36/91 (39%), Positives = 58/91 (63%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ + + +S C+P EIG L + V D S G+LP T+ + +EQ+D ++N+
Sbjct: 39887 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 39708
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G + +++C LP L NFT+SYNFF GE C+
Sbjct: 39707 GFVTDNICKLPKLSNFTFSYNFFNGEAQSCV 39615
Score = 34.5 bits (69), Expect(2) = 1e-025
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2 / -3
Query: 290 DDRQNCIAGRPDQRPGEECISFLHQP 367
DD NC+ RP+Q+ +EC+ + +P
Sbjct: 39587 DDTSNCLQNRPNQKSAKECLPVVSRP 39510
>ref|NM_112788.2| Arabidopsis thaliana protein binding / structural constituent of cell
wall AT3G19020 mRNA, complete cds
Length = 3147
Score = 104 bits (221), Expect(2) = 1e-025
Identities = 36/91 (39%), Positives = 58/91 (63%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ + + +S C+P EIG L + V D S G+LP T+ + +EQ+D ++N+
Sbjct: 865 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 1044
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G + +++C LP L NFT+SYNFF GE C+
Sbjct: 1045 GFVTDNICKLPKLSNFTFSYNFFNGEAQSCV 1137
Score = 34.5 bits (69), Expect(2) = 1e-025
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 290 DDRQNCIAGRPDQRPGEECISFLHQP 367
DD NC+ RP+Q+ +EC+ + +P
Sbjct: 1165 DDTSNCLQNRPNQKSAKECLPVVSRP 1242
>gb|AY091043.1| Arabidopsis thaliana unknown protein (At3g19020) mRNA, partial cds
Length = 2193
Score = 104 bits (221), Expect(2) = 1e-025
Identities = 36/91 (39%), Positives = 58/91 (63%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ + + +S C+P EIG L + V D S G+LP T+ + +EQ+D ++N+
Sbjct: 847 LNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFT 1026
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G + +++C LP L NFT+SYNFF GE C+
Sbjct: 1027 GFVTDNICKLPKLSNFTFSYNFFNGEAQSCV 1119
Score = 34.5 bits (69), Expect(2) = 1e-025
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 290 DDRQNCIAGRPDQRPGEECISFLHQP 367
DD NC+ RP+Q+ +EC+ + +P
Sbjct: 1147 DDTSNCLQNRPNQKSAKECLPVVSRP 1224
>gb|AC006438.4| Arabidopsis thaliana chromosome 2 clone F19G14 map mi398, complete
sequence
Length = 91106
Score = 103 bits (219), Expect(2) = 3e-025
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I ++ + C P EIGKLA + V D S S G LP + + ++E+ D++ N+L
Sbjct: 36953 LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLT 37132
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IPE++C LP L N TY+YN+F G+ C+
Sbjct: 37133 GFIPENICKLPKLVNLTYAYNYFNGQGDSCV 37225
Score = 34.1 bits (68), Expect(2) = 3e-025
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2 / +2
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DD +NC+ RP QR +EC + +P
Sbjct: 37250 LDDTRNCLPDRPKQRSAKECAVVISRP 37330
>ref|NM_127148.1| Arabidopsis thaliana structural constituent of cell wall AT2G15880
mRNA, complete cds
Length = 2184
Score = 103 bits (219), Expect(2) = 3e-025
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I ++ + C P EIGKLA + V D S S G LP + + ++E+ D++ N+L
Sbjct: 754 LNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLT 933
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G IPE++C LP L N TY+YN+F G+ C+
Sbjct: 934 GFIPENICKLPKLVNLTYAYNYFNGQGDSCV 1026
Score = 34.1 bits (68), Expect(2) = 3e-025
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2 / +1
Query: 287 VDDRQNCIAGRPDQRPGEECISFLHQP 367
+DD +NC+ RP QR +EC + +P
Sbjct: 1051 LDDTRNCLPDRPKQRSAKECAVVISRP 1131
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 4070708 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 4070887
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 4070888 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 4070977
>gb|AY026364.1| Arabidopsis thaliana leucine-rich repeat/extensin 1 (LRX1) mRNA,
complete cds
Length = 2444
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 766 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 945
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 946 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 1035
>gb|G72110.1|G72110 At-8.5BJ-540 Arabidopsis genomic DNA (B. Jordan) Arabidopsis
thaliana STS genomic, sequence tagged site
Length = 897
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 416 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 595
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 596 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 685
>emb|AX507988.1| Sequence 2683 from Patent WO0216655
Length = 2235
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 730 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 909
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 910 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 999
>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete sequence
Length = 123386
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 43736 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 43557
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 43556 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 43467
>ref|NM_101076.1| Arabidopsis thaliana LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) AT1G12040
(LRX1) mRNA, complete cds
Length = 2444
Score = 117 bits (250), Expect = 3e-025
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+LIL N ++ C+PP+IG L K+ V D++ + G LP ++GNM++LE+L VA+N
Sbjct: 766 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFT 945
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G IP S+C L +L+NFTYS N+F G P C
Sbjct: 946 GVIPPSICQLSNLENFTYSSNYFSGRPPIC 1035
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete
sequence
Length = 125021
Score = 99.6 bits (211), Expect(2) = 7e-025
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN+++ + ++ C P EIG L + V D S G+LP T+ + ++EQLD++HN+L
Sbjct: 24553 LNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLT 24732
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCL 274
G + + C LP+L +F +SYNFF GE C+
Sbjct: 24733 GFVVDKFCKLPNLDSFKFSYNFFNGEAESCV 24825
Score = 36.3 bits (73), Expect(2) = 7e-025
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 290 DDRQNCIAGRPDQRPGEECISFLHQP 367
DD NC+ RP Q+P ++C+ + +P
Sbjct: 24853 DDTNNCLQNRPSQKPAKQCLPVVSRP 24930
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 917,877,109
Number of Sequences: 1013581
Number of extensions: 10855980
Number of successful extensions: 179942
Number of sequences better than 1.0e-020: 69
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 39557333600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)