TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204272.2.1
(739 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flower... 76 4e-033
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 76 4e-032
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 76 4e-032
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 76 4e-032
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 76 4e-032
dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alph... 76 4e-032
dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alph... 76 4e-032
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 67 5e-028
>gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 3PRIM, mRNA sequence
Length = 1096
Score = 76.2 bits (160), Expect(4) = 4e-033
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / -1
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 331 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 155
Score = 66.1 bits (138), Expect(4) = 4e-033
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / -3
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 602 RWNPDAIVFNSSHLYGTPSYWVQRSFAESSGATLLTSTL 486
Score = 56.1 bits (116), Expect(3) = 6e-022
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / +3
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 177 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 344
Score = 46.4 bits (95), Expect(3) = 6e-022
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 646 STMSLFFSRPMRNAASAREARRLPVPAS 729
Score = 45.5 bits (93), Expect(3) = 6e-022
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +1 / +1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K Q*LGVP +ELKTIASGFH
Sbjct: 505 VAPLDSAKDR*TQ*LGVPYR*EELKTIASGFH 600
Score = 29.0 bits (57), Expect(4) = 4e-033
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = -3 / -3
Query: 500 ITWQDSENSFLRVKVINFGSDAVTLTI 420
I+W+++ +R+K +NFG+++ + +
Sbjct: 452 ISWKNNGKDHIRIKAVNFGANSENMQV 372
Score = 28.1 bits (55), Expect(4) = 4e-033
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / -2
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 741 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 658
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 76.2 bits (160), Expect(4) = 4e-032
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / +2
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 2057 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 2233
Score = 67.0 bits (140), Expect(4) = 4e-032
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +2
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 1787 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1903
Score = 56.1 bits (116), Expect(3) = 2e-021
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / -1
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 2211 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 2044
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / -1
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 1743 STMSLFFSRPMRNAASAREARRLPVPAS 1660
Score = 46.0 bits (94), Expect(3) = 2e-021
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1 / -1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K+ Q*LGVP +ELKTIASGFH
Sbjct: 1884 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFH 1789
Score = 28.1 bits (55), Expect(4) = 4e-032
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +1
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 1648 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 1731
Score = 24.4 bits (47), Expect(4) = 4e-032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 1888 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 1992
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 76.2 bits (160), Expect(4) = 4e-032
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / +2
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 2018 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 2194
Score = 67.0 bits (140), Expect(4) = 4e-032
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +2
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 1748 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1864
Score = 56.1 bits (116), Expect(3) = 2e-021
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / -3
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 2172 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 2005
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / -3
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 1704 STMSLFFSRPMRNAASAREARRLPVPAS 1621
Score = 46.0 bits (94), Expect(3) = 2e-021
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1 / -3
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K+ Q*LGVP +ELKTIASGFH
Sbjct: 1845 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFH 1750
Score = 28.1 bits (55), Expect(4) = 4e-032
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +1
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 1609 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 1692
Score = 24.4 bits (47), Expect(4) = 4e-032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 1849 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 1953
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 76.2 bits (160), Expect(4) = 4e-032
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / +3
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 1884 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 2060
Score = 67.0 bits (140), Expect(4) = 4e-032
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +3
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 1614 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1730
Score = 56.1 bits (116), Expect(3) = 2e-021
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / -1
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 2038 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 1871
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / -1
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 1570 STMSLFFSRPMRNAASAREARRLPVPAS 1487
Score = 46.0 bits (94), Expect(3) = 2e-021
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1 / -1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K+ Q*LGVP +ELKTIASGFH
Sbjct: 1711 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFH 1616
Score = 28.1 bits (55), Expect(4) = 4e-032
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +2
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 1475 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 1558
Score = 24.4 bits (47), Expect(4) = 4e-032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +2
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 1715 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 1819
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 76.2 bits (160), Expect(4) = 4e-032
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / +1
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 1810 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 1986
Score = 67.0 bits (140), Expect(4) = 4e-032
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 1540 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1656
Score = 56.1 bits (116), Expect(3) = 2e-021
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / -2
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 1964 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 1797
Score = 46.4 bits (95), Expect(3) = 2e-021
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / -2
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 1496 STMSLFFSRPMRNAASAREARRLPVPAS 1413
Score = 46.0 bits (94), Expect(3) = 2e-021
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1 / -2
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K+ Q*LGVP +ELKTIASGFH
Sbjct: 1637 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFH 1542
Score = 28.1 bits (55), Expect(4) = 4e-032
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +3
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 1401 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 1484
Score = 24.4 bits (47), Expect(4) = 4e-032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 1641 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 1745
>dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL24-02-J05
Length = 1328
Score = 76.2 bits (160), Expect(4) = 4e-032
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / +1
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 952 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 1128
Score = 67.0 bits (140), Expect(4) = 4e-032
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 682 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 798
Score = 56.1 bits (116), Expect(3) = 7e-022
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / -1
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 1106 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 939
Score = 46.4 bits (95), Expect(3) = 7e-022
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / -1
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 638 STMSLFFSRPMRNAASAREARRLPVPAS 555
Score = 46.0 bits (94), Expect(3) = 7e-022
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1 / -1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K+ Q*LGVP +ELKTIASGFH
Sbjct: 779 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFH 684
Score = 28.1 bits (55), Expect(4) = 4e-032
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +3
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 543 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 626
Score = 24.4 bits (47), Expect(4) = 4e-032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 783 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 887
>dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL22-21-H07
Length = 993
Score = 76.2 bits (160), Expect(4) = 4e-032
Identities = 36/59 (61%), Positives = 40/59 (67%)
Frame = -3 / +2
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQVTLAPRSFSSFDLALAQSKL 207
GS TVLTS +VMDENSFS P KVVP +S L A E M V L P SFSSFDL +K+
Sbjct: 617 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 793
Score = 67.0 bits (140), Expect(4) = 4e-032
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +2
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 347 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 463
Score = 56.1 bits (116), Expect(3) = 4e-022
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1 / -1
Query: 229 RSNELKERGASVTCICSAALLRSLFTGTTLVGLLKEFSSITSADVRTVAVDPRALI 396
+SNE KE G T I S+A L GTT G KEFSSIT +V TV DP LI
Sbjct: 771 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETLI 604
Score = 46.4 bits (95), Expect(3) = 4e-022
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = +1 / -1
Query: 640 SGFHLFFSSPVRKAASANEARRLPLPAS 723
S LFFS P+R AASA EARRLP+PAS
Sbjct: 303 STMSLFFSRPMRNAASAREARRLPVPAS 220
Score = 46.0 bits (94), Expect(3) = 4e-022
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1 / -1
Query: 556 IAPLDSRKSVCIQ*LGVP*CCQELKTIASGFH 651
+APLDS K+ Q*LGVP +ELKTIASGFH
Sbjct: 444 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFH 349
Score = 28.1 bits (55), Expect(4) = 4e-032
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +1
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 208 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 291
Score = 24.4 bits (47), Expect(4) = 4e-032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 448 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 552
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 67.0 bits (140), Expect(5) = 5e-028
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -3 / +1
Query: 653 RWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMFHPTTI 537
RWNPDAIVFNS YGTPSYW+Q F ESSGA +T+
Sbjct: 1789 RWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL 1905
Score = 54.2 bits (112), Expect(5) = 5e-028
Identities = 26/40 (65%), Positives = 28/40 (70%)
Frame = -3 / +1
Query: 383 GSTATVLTSADVMDENSFSNPTKVVPVKSDLSNAAEQMQV 264
GS TVLTS +VMDENSFS P KVVP +S L A E M V
Sbjct: 2059 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTV 2178
Score = 28.1 bits (55), Expect(5) = 5e-028
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2 / +3
Query: 735 CLER*CR*RKSSCFIGRSCFPYWTGEE* 652
C + C RK SC RSC +W+ +E*
Sbjct: 1650 CYWKRCWYRKPSCLSCRSCVSHWS*KE* 1733
Score = 24.9 bits (48), Expect(5) = 5e-028
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 260 LAPRSFSSFDLALAQSKL 207
L P SFSSFDL +K+
Sbjct: 2183 LPPHSFSSFDLLKESAKI 2236
Score = 24.4 bits (47), Expect(5) = 5e-028
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 549 SNDNQLQLLRFTCSVCDYLAGLREQLPKSKGHKLR 445
S+ N L F+C +C L ++L KG KLR
Sbjct: 1890 SHFNTQGKLYFSCCICYLLEKQWQRLHTHKGCKLR 1994
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,518,154,756
Number of Sequences: 1013581
Number of extensions: 21019572
Number of successful extensions: 141137
Number of sequences better than 1.0e-020: 8
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 46535533506
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)