TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.1
(642 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ005584.1|ATH005584 Arabidopsis thaliana mRNA for poly... 171 2e-041
gb|AY065239.1| Arabidopsis thaliana putative polygalacturon... 171 2e-041
gb|AY096534.1| Arabidopsis thaliana putative polygalacturon... 171 2e-041
gb|AY087578.1| Arabidopsis thaliana clone 36765 mRNA, compl... 171 2e-041
ref|NM_111661.2| Arabidopsis thaliana polygalacturonase AT3... 171 2e-041
emb|BX823174.1|CNS0A74O Arabidopsis thaliana Full-length cD... 169 9e-041
ref|NM_111663.2| Arabidopsis thaliana polygalacturonase AT3... 163 6e-039
ref|NM_117928.1| Arabidopsis thaliana polygalacturonase AT4... 159 1e-037
gb|BT005245.1| Arabidopsis thaliana At3g07830 mRNA, complet... 158 1e-037
dbj|AK117953.1| Arabidopsis thaliana At3g07830 mRNA for put... 158 1e-037
ref|NM_111662.2| Arabidopsis thaliana polygalacturonase AT3... 158 1e-037
gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome II... 105 2e-037
emb|AJ003135.1|ATAJ3135 Arabidopsis thaliana PGA5 gene, com... 105 2e-037
ref|NM_101576.1| Arabidopsis thaliana polygalacturonase AT1... 157 3e-037
ref|NM_106487.2| Arabidopsis thaliana polygalacturonase AT1... 156 6e-037
gb|AY089015.1| Arabidopsis thaliana clone 16377 mRNA, compl... 155 9e-037
gb|BT009687.1| Arabidopsis thaliana At5g48140 mRNA, complet... 155 9e-037
dbj|AK118684.1| Arabidopsis thaliana At5g48140 mRNA for put... 155 9e-037
ref|NM_124188.2| Arabidopsis thaliana polygalacturonase AT5... 155 9e-037
gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I... 109 3e-036
ref|NM_128875.1| Arabidopsis thaliana polygalacturonase AT2... 109 3e-036
emb|BX819999.1|CNS0AA2M Arabidopsis thaliana Full-length cD... 109 3e-036
ref|NM_128219.1| Arabidopsis thaliana polygalacturonase AT2... 152 1e-035
emb|BX822574.1|CNS0A73L Arabidopsis thaliana Full-length cD... 144 3e-033
gb|AY062447.1| Arabidopsis thaliana polygalacturonase; pect... 105 5e-033
ref|NM_112258.2| Arabidopsis thaliana polygalacturonase AT3... 105 5e-033
emb|BX823616.1|CNS0A4Y3 Arabidopsis thaliana Full-length cD... 105 5e-033
emb|X73222.1|ATEGP A.thaliana mRNA for exopolygalacturonase 105 5e-033
gb|AY114635.1| Arabidopsis thaliana polygalacturonase; pect... 105 5e-033
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 101 8e-033
emb|AX652128.1| Sequence 1979 from Patent WO03000898 87 8e-033
gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis tha... 87 8e-033
ref|NM_103464.1| Arabidopsis thaliana polygalacturonase AT1... 101 9e-033
ref|NM_103465.1| Arabidopsis thaliana polygalacturonase AT1... 101 9e-033
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 100 1e-032
gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23... 100 1e-032
gb|DQ056483.1| Arabidopsis thaliana glycoside hydrolase fam... 100 2e-032
ref|NM_103463.1| Arabidopsis thaliana polygalacturonase AT1... 100 2e-032
gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 B... 101 4e-032
ref|NM_129589.1| Arabidopsis thaliana polygalacturonase AT2... 100 6e-032
gb|AF085279.1|AF085279 Arabidopsis thaliana ABA-regulated g... 100 8e-032
gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G2... 100 8e-032
gb|AU238792.1|AU238792 AU238792 RAFL19 Arabidopsis thaliana... 139 8e-032
gb|AY056173.1| Arabidopsis thaliana putative exopolygalactu... 100 1e-031
ref|NM_111664.1| Arabidopsis thaliana polygalacturonase AT3... 100 1e-031
emb|X72292.1|ATEXOPB A.thaliana (clone GBGa483) mRNA for ex... 100 1e-031
gb|AY091200.1| Arabidopsis thaliana putative exopolygalactu... 100 1e-031
gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J2... 102 2e-031
ref|NM_127105.1| Arabidopsis thaliana polygalacturonase AT2... 102 4e-031
ref|NM_127106.1| Arabidopsis thaliana polygalacturonase AT2... 102 4e-031
gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O1... 102 7e-031
gb|AC006920.11| Arabidopsis thaliana chromosome 2 clone F26... 102 7e-031
ref|NM_117450.1| Arabidopsis thaliana polygalacturonase AT4... 104 7e-031
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 104 9e-031
emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosom... 104 9e-031
emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome ... 104 9e-031
ref|NM_127107.2| Arabidopsis thaliana polygalacturonase AT2... 100 2e-030
dbj|AB023039.1| Arabidopsis thaliana genomic DNA, chromosom... 103 3e-030
emb|AL161548.2|ATCHRIV48 Arabidopsis thaliana DNA chromosom... 99 6e-030
emb|AL021713.1|ATT9A21 Arabidopsis thaliana DNA chromosome ... 99 6e-030
emb|AL110123.1|ATF15J5 Arabidopsis thaliana DNA chromosome ... 99 6e-030
gb|AQ964056.1|AQ964056 LERGU38TF LERG Arabidopsis thaliana ... 99 6e-030
gb|AQ964057.1|AQ964057 LERGU38TR LERG Arabidopsis thaliana ... 99 6e-030
dbj|AB019229.1| Arabidopsis thaliana genomic DNA, chromosom... 59 1e-029
emb|AJ223189.1|ATAJ3189 Arabidopsis thaliana PGA2 gene 59 1e-029
gb|BX836604.1|BX836604 BX836604 Arabidopsis thaliana Flower... 95 8e-029
emb|AX507825.1| Sequence 2520 from Patent WO0216655 86 6e-028
ref|NM_100446.1| Arabidopsis thaliana polygalacturonase AT1... 86 6e-028
gb|DQ056578.1| Arabidopsis thaliana putative polygalacturon... 88 1e-027
ref|NM_129951.1| Arabidopsis thaliana polygalacturonase AT2... 88 1e-027
ref|NM_100445.1| Arabidopsis thaliana polygalacturonase AT1... 84 2e-027
gb|AV532721.1|AV532721 AV532721 Arabidopsis thaliana flower... 124 2e-027
ref|NM_106666.2| Arabidopsis thaliana polygalacturonase AT1... 90 9e-027
gb|AY046002.1| Arabidopsis thaliana putative polygalacturon... 90 9e-027
gb|AY142668.1| Arabidopsis thaliana putative polygalacturon... 90 9e-027
gb|AV782140.1|AV782140 AV782140 RAFL4 Arabidopsis thaliana ... 90 9e-027
ref|NM_111676.3| Arabidopsis thaliana polygalacturonase AT3... 85 2e-026
gb|AC022521.4|AC022521 Arabidopsis thaliana chromosome I BA... 67 6e-026
gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16... 67 6e-026
emb|Y16230.1|ATPGA3GE Arabidopsis thaliana PGA3 gene 67 6e-026
ref|NM_129950.1| Arabidopsis thaliana polygalacturonase AT2... 78 1e-025
ref|NM_115611.2| Arabidopsis thaliana ADPG1; polygalacturon... 64 7e-025
dbj|AK117942.1| Arabidopsis thaliana At3g57510 mRNA for put... 64 7e-025
emb|BX822956.1|CNS0A7SM Arabidopsis thaliana Full-length cD... 64 7e-025
emb|AX412563.1| Sequence 327 from Patent WO0222675 64 7e-025
gb|BT005376.1| Arabidopsis thaliana At3g57510 mRNA, complet... 64 7e-025
emb|AX651724.1| Sequence 557 from Patent WO03000898 64 7e-025
ref|NM_180028.1| Arabidopsis thaliana polygalacturonase AT2... 57 1e-024
emb|AX651722.1| Sequence 554 from Patent WO03000898 57 1e-024
ref|NM_115848.3| Arabidopsis thaliana polygalacturonase AT3... 82 2e-024
emb|BX823105.1|CNS0A4UN Arabidopsis thaliana Full-length cD... 82 2e-024
gb|BT015766.1| Arabidopsis thaliana At3g59850 mRNA, complet... 82 2e-024
gb|BT020180.1| Arabidopsis thaliana At3g59850 mRNA, complet... 82 2e-024
emb|BX824927.1|CNS0A4TY Arabidopsis thaliana Full-length cD... 82 2e-024
emb|BX813348.1|CNS0AE3X Arabidopsis thaliana Full-length cD... 85 2e-024
gb|AF428425.1|AF428425 Arabidopsis thaliana At1g02790/T14P4... 67 5e-024
ref|NM_100158.1| Arabidopsis thaliana PGA4 (POLYGALACTURONA... 67 5e-024
gb|AY065210.1| Arabidopsis thaliana putative polygalacturon... 67 5e-024
emb|X72291.1|ATEXOPA A.thaliana (clone GBGe184) mRNA for ex... 67 5e-024
gb|AY133812.1| Arabidopsis thaliana clone U18487 putative p... 67 5e-024
emb|BX822380.1|CNS0A76T Arabidopsis thaliana Full-length cD... 79 2e-023
gb|AI994651.1|AI994651 701499138 A. thaliana, Ohio State cl... 79 2e-023
gb|AY078936.1| Arabidopsis thaliana At2g41850/T11A7.5 mRNA,... 57 3e-023
gb|B12788.1|B12788 F7K19-T7 IGF Arabidopsis thaliana genomi... 69 3e-023
emb|BX825672.1|CNS0A7UV Arabidopsis thaliana Full-length cD... 58 4e-023
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 109 8e-023
emb|BX815901.1|CNS0AEH8 Arabidopsis thaliana Full-length cD... 77 8e-023
ref|NM_105231.1| Arabidopsis thaliana polygalacturonase AT1... 79 1e-022
gb|AV535049.1|AV535049 AV535049 Arabidopsis thaliana flower... 108 1e-022
emb|AX651258.1| Sequence 42 from Patent WO03000898 53 3e-022
ref|NM_129949.1| Arabidopsis thaliana polygalacturonase AT2... 53 3e-022
gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E1... 54 7e-022
gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A... 57 1e-021
emb|AX461255.1| Sequence 184 from Patent WO0198480 57 2e-021
emb|AX461137.1| Sequence 66 from Patent WO0198480 57 2e-021
gb|CD533820.1|CD533820 33P11 Arabidopsis Leaf Senescence Li... 57 2e-021
gb|CL504361.1|CL504361 SAIL_736_A05.v1 SAIL Collection Arab... 67 2e-021
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 105 2e-021
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 105 2e-021
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 104 3e-021
gb|B78058.1|B78058 T30C17TR TAMU Arabidopsis thaliana genom... 72 5e-021
emb|AL772721.1| Arabidopsis thaliana transposon insertion S... 103 5e-021
gb|DQ056577.1| Arabidopsis thaliana putative polygalacturon... 57 6e-021
ref|NM_129948.1| Arabidopsis thaliana polygalacturonase AT2... 57 6e-021
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 103 6e-021
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 103 6e-021
ref|NM_119390.2| Arabidopsis thaliana polygalacturonase AT4... 53 8e-021
ref|NM_148391.1| Arabidopsis thaliana polygalacturonase AT4... 87 8e-021
gb|BZ292467.1|BZ292467 SALK_124287.53.80.x Arabidopsis thal... 73 9e-021
>emb|AJ005584.1|ATH005584 Arabidopsis thaliana mRNA for polygalacturonase
Length = 1350
Score = 171 bits (368), Expect = 2e-041
Identities = 71/155 (45%), Positives = 97/155 (62%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 719 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 898
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+VS PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V+
Sbjct: 899 DVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVE 1078
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ ++DIKYN +D C N K +G AC
Sbjct: 1079 IGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1183
>gb|AY065239.1| Arabidopsis thaliana putative polygalacturonase(PGA3 (At3g07820)
mRNA, complete cds
Length = 1401
Score = 171 bits (368), Expect = 2e-041
Identities = 71/155 (45%), Positives = 97/155 (62%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 761 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 940
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+VS PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V+
Sbjct: 941 DVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVE 1120
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ ++DIKYN +D C N K +G AC
Sbjct: 1121 IGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1225
>gb|AY096534.1| Arabidopsis thaliana putative polygalacturonase (PGA3) (At3g07820)
mRNA, complete cds
Length = 1207
Score = 171 bits (368), Expect = 2e-041
Identities = 71/155 (45%), Positives = 97/155 (62%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 694 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 873
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+VS PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V+
Sbjct: 874 DVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVE 1053
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ ++DIKYN +D C N K +G AC
Sbjct: 1054 IGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1158
>gb|AY087578.1| Arabidopsis thaliana clone 36765 mRNA, complete sequence
Length = 1385
Score = 171 bits (368), Expect = 2e-041
Identities = 71/155 (45%), Positives = 97/155 (62%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 761 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 940
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+VS PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V+
Sbjct: 941 DVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVE 1120
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ ++DIKYN +D C N K +G AC
Sbjct: 1121 IGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1225
>ref|NM_111661.2| Arabidopsis thaliana polygalacturonase AT3G07820 mRNA, complete cds
Length = 1400
Score = 171 bits (368), Expect = 2e-041
Identities = 71/155 (45%), Positives = 97/155 (62%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 761 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 940
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+VS PI+IDQ+YCP N C K AS + + ++ FKNI GTS +A+ L C+ PCQ V+
Sbjct: 941 DVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVE 1120
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ ++DIKYN +D C N K +G AC
Sbjct: 1121 IGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1225
>emb|BX823174.1|CNS0A74O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 169 bits (363), Expect = 9e-041
Identities = 70/155 (45%), Positives = 96/155 (61%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 746 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 925
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+VS PI+IDQ+YCP N C K AS + + ++ FKNI GT +A+ L C+ PCQ V+
Sbjct: 926 DVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTPGNKDAVKLLCSKGYPCQNVE 1105
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ ++DIKYN +D C N K +G AC
Sbjct: 1106 IGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 1210
>ref|NM_111663.2| Arabidopsis thaliana polygalacturonase AT3G07840 mRNA, complete cds
Length = 1296
Score = 163 bits (350), Expect = 6e-039
Identities = 66/155 (42%), Positives = 96/155 (61%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV + V CTL GT NGLRIK++ + + A+ ++++ ++
Sbjct: 787 GHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILN 966
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K S + + D+ FKNI GTS +A+ L C+ PC V+
Sbjct: 967 NVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVE 1146
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ N++++Y +D +C N K +G AC
Sbjct: 1147 IGNINLEYKGADGPPTFMCSNVSPKLVGTQNPKAC 1251
>ref|NM_117928.1| Arabidopsis thaliana polygalacturonase AT4G18180 mRNA, complete cds
Length = 1245
Score = 159 bits (341), Expect = 1e-037
Identities = 63/132 (47%), Positives = 93/132 (70%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY +EKDV + V C ++GTTNG+RIK++ +S AT ++++ M+
Sbjct: 742 GHGISVGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMN 921
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NV+ PIIIDQ YCP + C+ + SKV ++++ FKNI GTS++ A+ L+C+ +PC+ V
Sbjct: 922 NVTNPIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVY 1101
Query: 363 LINVDIKYNRSD 398
L NV + + SD
Sbjct: 1102 LENVHLDLSSSD 1137
>gb|BT005245.1| Arabidopsis thaliana At3g07830 mRNA, complete cds
Length = 678
Score = 158 bits (340), Expect = 1e-037
Identities = 64/155 (41%), Positives = 96/155 (61%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV ++V CTL T NGLRIK++ + S A+ ++++ +
Sbjct: 181 GHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILR 360
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ
Sbjct: 361 NVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQ 540
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +++I+Y +D +C N K +G AC
Sbjct: 541 VGDINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 645
>dbj|AK117953.1| Arabidopsis thaliana At3g07830 mRNA for putative polygalacturonase,
complete cds, clone: RAFL19-14-E02
Length = 989
Score = 158 bits (340), Expect = 1e-037
Identities = 64/155 (41%), Positives = 96/155 (61%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV ++V CTL T NGLRIK++ + S A+ ++++ +
Sbjct: 269 GHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILR 448
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ
Sbjct: 449 NVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQ 628
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +++I+Y +D +C N K +G AC
Sbjct: 629 VGDINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 733
>ref|NM_111662.2| Arabidopsis thaliana polygalacturonase AT3G07830 mRNA, complete cds
Length = 1460
Score = 158 bits (340), Expect = 1e-037
Identities = 64/155 (41%), Positives = 96/155 (61%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV ++V CTL T NGLRIK++ + S A+ ++++ +
Sbjct: 752 GHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILR 931
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ
Sbjct: 932 NVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQ 1111
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +++I+Y +D +C N K +G AC
Sbjct: 1112 VGDINIQYTGADGPATFMCSNVRPKLVGTQFPKAC 1216
>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence,
complete sequence
Length = 121054
Score = 105 bits (223), Expect(2) = 2e-037
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +3 / -3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 48194 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 48015
Query: 183 NVSYPIIIDQKYCPNNICVK 242
+VS PI+IDQ+YCP N C K
Sbjct: 48014 DVSNPILIDQEYCPWNQCNK 47955
Score = 105 bits (223), Expect(2) = 2e-031
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +3 / -1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV + V CTL GT NGLRIK++ + + A+ ++++ ++
Sbjct: 53635 GHGISVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILN 53456
Query: 183 NVSYPIIIDQKYCPNNICVK 242
NVS PI+IDQ+YCP N C K
Sbjct: 53455 NVSNPILIDQEYCPWNQCNK 53396
Score = 103 bits (220), Expect(2) = 5e-030
Identities = 42/80 (52%), Positives = 56/80 (70%)
Frame = +3 / -3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV ++V CTL T NGLRIK++ + S A+ ++++ +
Sbjct: 51104 GHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILR 50925
Query: 183 NVSYPIIIDQKYCPNNICVK 242
NVS PI+IDQ+YCP N C K
Sbjct: 50924 NVSNPILIDQEYCPWNQCNK 50865
Score = 73.0 bits (153), Expect(2) = 2e-037
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +3 / -1
Query: 231 ICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTM 410
IC AS + + ++ FKNI GTS +A+ L C+ PCQ V++ ++DIKYN +D
Sbjct: 47881 ICDLQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPAT 47702
Query: 411 SVCKNAIGKSIGMAKELAC 467
C N K +G AC
Sbjct: 47701 FHCSNVSPKILGSQSPKAC 47645
Score = 62.5 bits (130), Expect(2) = 2e-031
Identities = 24/72 (33%), Positives = 39/72 (54%)
Frame = +3 / -3
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAI 431
S + + D+ FKNI GTS +A+ L C+ PC V++ N++++Y +D +C N
Sbjct: 53183 STIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVS 53004
Query: 432 GKSIGMAKELAC 467
K +G AC
Sbjct: 53003 PKLVGTQNPKAC 52968
Score = 58.8 bits (122), Expect(2) = 5e-030
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +3 / -3
Query: 249 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNA 428
+S + + ++ F+ I GTS +A+ L C+ PC+ VQ+ +++I+Y +D +C N
Sbjct: 50735 SSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNV 50556
Query: 429 IGKSIGMAKELAC 467
K +G AC
Sbjct: 50555 RPKLVGTQFPKAC 50517
Score = 58.3 bits (121), Expect(3) = 1e-028
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 57438 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 57310
Score = 54.7 bits (113), Expect(3) = 1e-028
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +3 / -1
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
S+V ++DV K I GTS T A+ L C+ +PC + L ++++ +N + +S C N
Sbjct: 57085 SQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 56912
Score = 53.3 bits (110), Expect(3) = 1e-028
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3 / -2
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVN 269
A+ L++D+TMDNVS P++IDQ+YCP C +++ N
Sbjct: 57297 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVCNRIESN 57175
>emb|AJ003135.1|ATAJ3135 Arabidopsis thaliana PGA5 gene, complete CDS
Length = 2556
Score = 105 bits (223), Expect(2) = 2e-037
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV +KV CTL T NGLRIK++ + S A+ ++D+ +
Sbjct: 1824 GHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILK 2003
Query: 183 NVSYPIIIDQKYCPNNICVK 242
+VS PI+IDQ+YCP N C K
Sbjct: 2004 DVSNPILIDQEYCPWNQCNK 2063
Score = 73.0 bits (153), Expect(2) = 2e-037
Identities = 30/79 (37%), Positives = 43/79 (54%)
Frame = +3 / +1
Query: 231 ICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTM 410
IC AS + + ++ FKNI GTS +A+ L C+ PCQ V++ ++DIKYN +D
Sbjct: 2137 ICDLQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPAT 2316
Query: 411 SVCKNAIGKSIGMAKELAC 467
C N K +G AC
Sbjct: 2317 FHCSNVSPKILGSQSPKAC 2373
>ref|NM_101576.1| Arabidopsis thaliana polygalacturonase AT1G17150 mRNA, complete cds
Length = 1209
Score = 157 bits (337), Expect = 3e-037
Identities = 62/148 (41%), Positives = 92/148 (62%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLG+ KDEK+V + V GTTNG+RIK++E S S+++ +Y+++ M
Sbjct: 736 GHGISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMI 915
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NV PI IDQKYCP C G S + + +V KNI GTS A+ C+ PC+ VQ
Sbjct: 916 NVENPIGIDQKYCPYPPCSNMGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQ 1095
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIG 446
LI++++ ++ D ++C+N G + G
Sbjct: 1096 LIDINLTHHGVDGPASALCENVDGSATG 1179
>ref|NM_106487.2| Arabidopsis thaliana polygalacturonase AT1G78400 mRNA, complete cds
Length = 1215
Score = 156 bits (335), Expect = 6e-037
Identities = 66/156 (42%), Positives = 94/156 (60%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG++K EK V+ + V GT+NG+RIK++ + FL++++ M
Sbjct: 742 GHGISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMI 921
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+V PI IDQ+YCPN C SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQ
Sbjct: 922 DVQSPINIDQRYCPNPPCSFQSFSKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQ 1101
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELACV 470
L N++I + D SVC+N G G +C+
Sbjct: 1102 LFNINIVHRGRDGPATSVCENVGGWIGGKISPPSCI 1209
>gb|AY089015.1| Arabidopsis thaliana clone 16377 mRNA, complete sequence
Length = 1462
Score = 155 bits (334), Expect = 9e-037
Identities = 63/155 (40%), Positives = 94/155 (60%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRY E++V +K+ CTL T NGLRIK++ + + A+ ++++ +
Sbjct: 806 GHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLK 985
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V+
Sbjct: 986 NVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVE 1165
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +V+I+Y +D C N K +G AC
Sbjct: 1166 VGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1270
>gb|BT009687.1| Arabidopsis thaliana At5g48140 mRNA, complete cds
Length = 1188
Score = 155 bits (334), Expect = 9e-037
Identities = 63/155 (40%), Positives = 94/155 (60%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRY E++V +K+ CTL T NGLRIK++ + + A+ ++++ +
Sbjct: 694 GHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLK 873
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V+
Sbjct: 874 NVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVE 1053
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +V+I+Y +D C N K +G AC
Sbjct: 1054 VGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1158
>dbj|AK118684.1| Arabidopsis thaliana At5g48140 mRNA for putative polygalacturonase,
complete cds, clone: RAFL19-95-F20
Length = 1466
Score = 155 bits (334), Expect = 9e-037
Identities = 63/155 (40%), Positives = 94/155 (60%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRY E++V +K+ CTL T NGLRIK++ + + A+ ++++ +
Sbjct: 808 GHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLK 987
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V+
Sbjct: 988 NVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVE 1167
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +V+I+Y +D C N K +G AC
Sbjct: 1168 VGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1272
>ref|NM_124188.2| Arabidopsis thaliana polygalacturonase AT5G48140 mRNA, complete cds
Length = 1439
Score = 155 bits (334), Expect = 9e-037
Identities = 63/155 (40%), Positives = 94/155 (60%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLGRY E++V +K+ CTL T NGLRIK++ + + A+ ++++ +
Sbjct: 808 GHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLK 987
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K S + + ++ FK I GTS +A+ L C+ PCQ V+
Sbjct: 988 NVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVE 1167
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIGMAKELAC 467
+ +V+I+Y +D C N K +G AC
Sbjct: 1168 VGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKAC 1272
>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete
sequence
Length = 93158
Score = 109 bits (233), Expect(2) = 3e-036
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3 / -3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYK+EK+V+ + V + GTT+GLRIK++ S S + + FLY+++ M
Sbjct: 45963 GHGISVGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMI 45784
Query: 183 NVSYPIIIDQKYCPNNICVKSG 248
NV PI+IDQ+YCP+ C G
Sbjct: 45783 NVGNPIVIDQQYCPHGQCDSPG 45718
Score = 64.3 bits (134), Expect(2) = 3e-036
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +3 / -3
Query: 249 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNA 428
AS V + DV + NI GTS + EA+ + C+ PCQ V+L N+++ Y D ++C+N
Sbjct: 45711 ASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENV 45532
Query: 429 IGKSIGMAKELAC 467
G G C
Sbjct: 45531 GGSIRGKIVPANC 45493
>ref|NM_128875.1| Arabidopsis thaliana polygalacturonase AT2G33160 mRNA, complete cds
Length = 1995
Score = 109 bits (233), Expect(2) = 3e-036
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYK+EK+V+ + V + GTT+GLRIK++ S S + + FLY+++ M
Sbjct: 736 GHGISVGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMI 915
Query: 183 NVSYPIIIDQKYCPNNICVKSG 248
NV PI+IDQ+YCP+ C G
Sbjct: 916 NVGNPIVIDQQYCPHGQCDSPG 981
Score = 64.3 bits (134), Expect(2) = 3e-036
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +3 / +1
Query: 249 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNA 428
AS V + DV + NI GTS + EA+ + C+ PCQ V+L N+++ Y D ++C+N
Sbjct: 988 ASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENV 1167
Query: 429 IGKSIGMAKELAC 467
G G C
Sbjct: 1168 GGSIRGKIVPANC 1206
>emb|BX819999.1|CNS0AA2M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS59ZH05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1532
Score = 109 bits (233), Expect(2) = 3e-036
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRYK+EK+V+ + V + GTT+GLRIK++ S S + + FLY+++ M
Sbjct: 758 GHGISVGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMI 937
Query: 183 NVSYPIIIDQKYCPNNICVKSG 248
NV PI+IDQ+YCP+ C G
Sbjct: 938 NVGNPIVIDQQYCPHGQCDSPG 1003
Score = 64.3 bits (134), Expect(2) = 3e-036
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +3 / +2
Query: 249 ASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNA 428
AS V + DV + NI GTS + EA+ + C+ PCQ V+L N+++ Y D ++C+N
Sbjct: 1010 ASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALCENV 1189
Query: 429 IGKSIGMAKELAC 467
G G C
Sbjct: 1190 GGSIRGKIVPANC 1228
>ref|NM_128219.1| Arabidopsis thaliana polygalacturonase AT2G26620 mRNA, complete cds
Length = 1209
Score = 152 bits (326), Expect = 1e-035
Identities = 61/129 (47%), Positives = 88/129 (68%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKDLFVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
+V PI IDQKYCP+ C S V + D+ KNI+GTS A+ L C+ + PC+ V+
Sbjct: 913 DVGKPINIDQKYCPHPPCEHERKSHVQIQDLKLKNIYGTSKNKVAVNLQCSKSFPCKNVE 1092
Query: 363 LINVDIKYN 389
LI+++IK N
Sbjct: 1093 LIDINIKQN 1119
>emb|BX822574.1|CNS0A73L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB4ZD01 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1339
Score = 144 bits (309), Expect = 3e-033
Identities = 60/148 (40%), Positives = 90/148 (60%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV ++V CT T NGLRIK++ + S A+ ++++ +
Sbjct: 762 GHGISVGSLGRYGHEQDVSGIRVINCTPQETDNGLRIKTWPSAACSTTASNIHFENIILR 941
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K +S + + D+ F+ I GTS +A+ L C PC+ VQ
Sbjct: 942 NVSNPILIDQEYCPWNQCYKQKSSSIKLADICFRRIRGTSGKKDAVKLLCGKGYPCENVQ 1121
Query: 363 LINVDIKYNRSDNKTMSVCKNAIGKSIG 446
+ +++I+ +D + N K +G
Sbjct: 1122 VGDINIQ*IGADGPATFMWSNVRPKLVG 1205
>gb|AY062447.1| Arabidopsis thaliana polygalacturonase; pectinase (At3g14060;
MDC16.18) mRNA, complete cds
Length = 1667
Score = 105 bits (223), Expect(2) = 5e-033
Identities = 39/93 (41%), Positives = 59/93 (63%)
Frame = +3 / +1
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1081 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1260
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1261 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1359
Score = 58.3 bits (121), Expect(2) = 5e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 940 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1068
>ref|NM_112258.2| Arabidopsis thaliana polygalacturonase AT3G14040 mRNA, complete cds
Length = 1668
Score = 105 bits (223), Expect(2) = 5e-033
Identities = 39/93 (41%), Positives = 59/93 (63%)
Frame = +3 / +1
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1081 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1260
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1261 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1359
Score = 58.3 bits (121), Expect(2) = 5e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 940 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1068
>emb|BX823616.1|CNS0A4Y3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS57ZE12 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1644
Score = 105 bits (223), Expect(2) = 5e-033
Identities = 39/93 (41%), Positives = 59/93 (63%)
Frame = +3 / +2
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1067 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1246
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1247 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1345
Score = 58.3 bits (121), Expect(2) = 5e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 926 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1054
>emb|X73222.1|ATEGP A.thaliana mRNA for exopolygalacturonase
Length = 1617
Score = 105 bits (223), Expect(2) = 5e-033
Identities = 39/93 (41%), Positives = 59/93 (63%)
Frame = +3 / +2
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 1049 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1228
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1229 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1327
Score = 58.3 bits (121), Expect(2) = 5e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 908 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1036
>gb|AY114635.1| Arabidopsis thaliana polygalacturonase; pectinase (At3g14060) mRNA,
complete cds
Length = 1484
Score = 105 bits (223), Expect(2) = 5e-033
Identities = 39/93 (41%), Positives = 59/93 (63%)
Frame = +3 / +1
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C SKV ++DV KNI GTS T A+ L
Sbjct: 991 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKL 1170
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1171 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1269
Score = 58.3 bits (121), Expect(2) = 5e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 850 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 978
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 101 bits (216), Expect(2) = 4e-032
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L + F+Y+++ M
Sbjct: 704221 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMI 704042
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 704041 DVGKPINIDQKYCPHPPC 703988
Score = 101 bits (216), Expect(2) = 4e-032
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L + F+Y+++ M
Sbjct: 707543 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMI 707364
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 707363 DVGKPINIDQKYCPHPPC 707310
Score = 100 bits (214), Expect(2) = 7e-032
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3 / -3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 700899 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMI 700720
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 700719 DVGKPINIDQKYCPHPPC 700666
Score = 99.1 bits (210), Expect(2) = 2e-030
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +3 / -3
Query: 6 HGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDN 185
HGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + T F+Y+++ M +
Sbjct: 672738 HGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASIIVVTNFIYENIQMID 672559
Query: 186 VSYPIIIDQKYCPNNIC 236
V PI IDQKYCP+ C
Sbjct: 672558 VGKPINIDQKYCPHPPC 672508
Score = 98.7 bits (209), Expect(2) = 2e-023
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVG LG+ KDEKDV+ + V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 710884 GHGISVGRLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMI 710705
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 710704 DVGKPINIDQKYCPHPPC 710651
Score = 87.2 bits (184), Expect(2) = 8e-033
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +3 / -1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG++K EK V+ + V GT+NG+RIK++ + FL++++ M
Sbjct: 13740041 GHGISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMI 13739862
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQ+YCPN C
Sbjct: 13739861 DVQSPINIDQRYCPNPPC 13739808
Score = 75.3 bits (158), Expect(2) = 8e-033
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3 / -1
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAI 431
SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL N++I + D SVC+N
Sbjct: 13739717 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 13739538
Query: 432 GKSIGMAKELACV 470
G G +C+
Sbjct: 13739537 GWIGGKISPPSCI 13739499
Score = 58.3 bits (121), Expect(2) = 7e-032
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3 / -2
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 700558 GESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 700418
Score = 58.3 bits (121), Expect(2) = 4e-032
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3 / -1
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 703880 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 703740
Score = 58.3 bits (121), Expect(2) = 4e-032
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3 / -3
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 707202 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 707062
Score = 55.6 bits (115), Expect(2) = 2e-030
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3 / -1
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTS A+ L C+ + PC+ V+LI++++K+
Sbjct: 672401 GESHVQIQDIKLKNIYGTSKNIMAVNLQCSKSFPCKNVELIDINLKH 672261
Score = 48.7 bits (100), Expect(2) = 2e-023
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +3 / -3
Query: 282 KNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 710508 KNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 710404
>emb|AX652128.1| Sequence 1979 from Patent WO03000898
Length = 95769
Score = 87.2 bits (184), Expect(2) = 8e-033
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG++K EK V+ + V GT+NG+RIK++ + FL++++ M
Sbjct: 27605 GHGISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMI 27784
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQ+YCPN C
Sbjct: 27785 DVQSPINIDQRYCPNPPC 27838
Score = 75.3 bits (158), Expect(2) = 8e-033
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3 / +2
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAI 431
SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL N++I + D SVC+N
Sbjct: 27929 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 28108
Query: 432 GKSIGMAKELACV 470
G G +C+
Sbjct: 28109 GWIGGKISPPSCI 28147
>gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis thaliana BAC F3F9 from chromosome I,
complete sequence
Length = 95769
Score = 87.2 bits (184), Expect(2) = 8e-033
Identities = 36/78 (46%), Positives = 51/78 (65%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG++K EK V+ + V GT+NG+RIK++ + FL++++ M
Sbjct: 27605 GHGISVGSLGKFKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMI 27784
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQ+YCPN C
Sbjct: 27785 DVQSPINIDQRYCPNPPC 27838
Score = 75.3 bits (158), Expect(2) = 8e-033
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +3 / +2
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSVCKNAI 431
SK+ + DV F+NI GTS EA+ L C+ N+PC+ VQL N++I + D SVC+N
Sbjct: 27929 SKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENVG 28108
Query: 432 GKSIGMAKELACV 470
G G +C+
Sbjct: 28109 GWIGGKISPPSCI 28147
>ref|NM_103464.1| Arabidopsis thaliana polygalacturonase AT1G43090 mRNA, complete cds
Length = 1335
Score = 101 bits (216), Expect(2) = 9e-033
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 60.6 bits (126), Expect(2) = 9e-033
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 976 KKGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 1122
>ref|NM_103465.1| Arabidopsis thaliana polygalacturonase AT1G43100 mRNA, complete cds
Length = 1335
Score = 101 bits (216), Expect(2) = 9e-033
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 60.6 bits (126), Expect(2) = 9e-033
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 976 KKGKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 1122
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 100 bits (213), Expect(2) = 1e-032
Identities = 40/78 (51%), Positives = 54/78 (69%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLG+ KDEK+V + V GTTNG+RIK++E S S+++ +Y+++ M
Sbjct: 5866751 GHGISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMI 5866930
Query: 183 NVSYPIIIDQKYCPNNIC 236
NV PI IDQKYCP C
Sbjct: 5866931 NVENPIGIDQKYCPYPPC 5866984
Score = 66.6 bits (139), Expect(3) = 5e-026
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSS 140
GHG+SVGSLG+YK+E+DV + V CT+ T NGLRIK++ S S
Sbjct: 611312 GHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPS 611175
Score = 61.6 bits (128), Expect(2) = 1e-032
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +3 / +3
Query: 237 VKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSV 416
+ G S + + +V KNI GTS A+ C+ PC+ VQLI++++ ++ D ++
Sbjct: 5867073 LSQGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASAL 5867252
Query: 417 CKNAIGKSIG 446
C+N G + G
Sbjct: 5867253 CENVDGSATG 5867282
Score = 60.6 bits (126), Expect(3) = 5e-026
Identities = 19/45 (42%), Positives = 36/45 (80%)
Frame = +3 / -2
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
S+VA++D++FKNI GT+ T + + + C+ ++PCQGV +++V++ Y
Sbjct: 610991 SQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDY 610857
Score = 29.9 bits (59), Expect(3) = 5e-026
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3 / -2
Query: 144 KATKFLYQDVTMDNVSYPIIIDQKY 218
KA ++++ M +V PIIIDQ Y
Sbjct: 611174 KAVDIKFENIIMQSVKNPIIIDQNY 611100
>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete
sequence
Length = 114935
Score = 100 bits (213), Expect(2) = 1e-032
Identities = 40/78 (51%), Positives = 54/78 (69%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGIS+GSLG+ KDEK+V + V GTTNG+RIK++E S S+++ +Y+++ M
Sbjct: 56503 GHGISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMI 56324
Query: 183 NVSYPIIIDQKYCPNNIC 236
NV PI IDQKYCP C
Sbjct: 56323 NVENPIGIDQKYCPYPPC 56270
Score = 61.6 bits (128), Expect(2) = 1e-032
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +3 / -3
Query: 237 VKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKTMSV 416
+ G S + + +V KNI GTS A+ C+ PC+ VQLI++++ ++ D ++
Sbjct: 56181 LSQGDSHIQIRNVTLKNIWGTSKNKVAVKFQCSKTFPCKDVQLIDINLTHHGVDGPASAL 56002
Query: 417 CKNAIGKSIG 446
C+N G + G
Sbjct: 56001 CENVDGSATG 55972
>gb|DQ056483.1| Arabidopsis thaliana glycoside hydrolase family 28 protein
(At1g43080) mRNA, complete cds
Length = 1215
Score = 100 bits (214), Expect(2) = 2e-032
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 60.6 bits (126), Expect(2) = 2e-032
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 976 KKGESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 1122
>ref|NM_103463.1| Arabidopsis thaliana polygalacturonase AT1G43080 mRNA, complete cds
Length = 1215
Score = 100 bits (214), Expect(2) = 2e-032
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 60.6 bits (126), Expect(2) = 2e-032
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
K G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 976 KKGESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 1122
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete
sequence
Length = 95870
Score = 101 bits (216), Expect(2) = 4e-032
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L + F+Y+++ M
Sbjct: 80767 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMI 80588
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 80587 DVGKPINIDQKYCPHPPC 80534
Score = 101 bits (216), Expect(2) = 4e-032
Identities = 41/78 (52%), Positives = 56/78 (71%)
Frame = +3 / -1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S L + F+Y+++ M
Sbjct: 84089 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKLVVSNFIYENIQMI 83910
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 83909 DVGKPINIDQKYCPHPPC 83856
Score = 100 bits (214), Expect(2) = 8e-032
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3 / -3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 77445 GHGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMI 77266
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 77265 DVGKPINIDQKYCPHPPC 77212
Score = 99.1 bits (210), Expect(2) = 2e-030
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +3 / -3
Query: 6 HGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMDN 185
HGISVGSLG+ KDEKDV+ + V GT++G+RIK++E S S + T F+Y+++ M +
Sbjct: 49284 HGISVGSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASIIVVTNFIYENIQMID 49105
Query: 186 VSYPIIIDQKYCPNNIC 236
V PI IDQKYCP+ C
Sbjct: 49104 VGKPINIDQKYCPHPPC 49054
Score = 98.7 bits (209), Expect(2) = 1e-025
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +3 / -2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVG LG+ KDEKDV+ + V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 87430 GHGISVGRLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMI 87251
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 87250 DVGKPINIDQKYCPHPPC 87197
Score = 58.3 bits (121), Expect(2) = 8e-032
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3 / -2
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 77104 GESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 76964
Score = 58.3 bits (121), Expect(2) = 4e-032
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3 / -1
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 80426 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 80286
Score = 58.3 bits (121), Expect(2) = 4e-032
Identities = 20/47 (42%), Positives = 33/47 (70%)
Frame = +3 / -3
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 83748 GKSHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 83608
Score = 55.6 bits (115), Expect(2) = 2e-030
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3 / -1
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
G S V + D+ KNI+GTS A+ L C+ + PC+ V+LI++++K+
Sbjct: 48947 GESHVQIQDIKLKNIYGTSKNIMAVNLQCSKSFPCKNVELIDINLKH 48807
Score = 48.7 bits (100), Expect(2) = 1e-025
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +3 / -3
Query: 282 KNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKY 386
KNI+GTSN A+ L C+ + PC+ V+LI++++K+
Sbjct: 87054 KNIYGTSNNIVAVNLQCSKSFPCKNVELIDINLKH 86950
>ref|NM_129589.1| Arabidopsis thaliana polygalacturonase AT2G40310 mRNA, complete cds
Length = 1215
Score = 100 bits (214), Expect(2) = 6e-032
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+++ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKNLTVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 58.8 bits (122), Expect(2) = 6e-032
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKT 407
+ G S V + D+ KNI+GTS A+ L C+ + PC+ ++LI+++IK N +N +
Sbjct: 976 QKGESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNIELIDINIKSNGLENSS 1143
>gb|AF085279.1|AF085279 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence
Length = 95713
Score = 100 bits (214), Expect(2) = 8e-032
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+++ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 80167 GHGISVGSLGKNKDEKDVKNLTVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMI 80346
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 80347 DVGKPINIDQKYCPHPPC 80400
Score = 58.3 bits (121), Expect(2) = 8e-032
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3 / +2
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKT 407
G S V + D+ KNI+GTS A+ L C+ + PC+ ++LI+++IK N +N +
Sbjct: 80516 GESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNIELIDINIKSNGLENSS 80677
>gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete
sequence
Length = 82652
Score = 100 bits (214), Expect(2) = 8e-032
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+++ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 25117 GHGISVGSLGKNKDEKDVKNLTVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMI 25296
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 25297 DVGKPINIDQKYCPHPPC 25350
Score = 58.3 bits (121), Expect(2) = 8e-032
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3 / +2
Query: 246 GASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYNRSDNKT 407
G S V + D+ KNI+GTS A+ L C+ + PC+ ++LI+++IK N +N +
Sbjct: 25466 GESHVQIQDLKLKNIYGTSKNKVAMNLQCSKSFPCKNIELIDINIKSNGLENSS 25627
>gb|AU238792.1|AU238792 AU238792 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-14-E02 5',
mRNA sequence
Length = 635
Score = 139 bits (298), Expect = 8e-032
Identities = 55/121 (45%), Positives = 80/121 (66%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLGRY E+DV ++V CTL T NGLRIK++ + S A+ ++++ +
Sbjct: 269 GHGISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILR 448
Query: 183 NVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQ 362
NVS PI+IDQ+YCP N C K +S + + ++ F+ I GTS +A+ L C+ PC+ VQ
Sbjct: 449 NVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQ 628
Query: 363 L 365
+
Sbjct: 629 V 631
>gb|AY056173.1| Arabidopsis thaliana putative exopolygalacturonase (At3g07850) mRNA,
complete cds
Length = 1705
Score = 100 bits (213), Expect(2) = 1e-031
Identities = 37/93 (39%), Positives = 58/93 (62%)
Frame = +3 / +3
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C S+V ++DV K I GTS T A+ L
Sbjct: 1077 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKL 1256
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1257 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1355
Score = 58.3 bits (121), Expect(2) = 1e-031
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 936 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1064
>ref|NM_111664.1| Arabidopsis thaliana polygalacturonase AT3G07850 mRNA, complete cds
Length = 1690
Score = 100 bits (213), Expect(2) = 1e-031
Identities = 37/93 (39%), Positives = 58/93 (62%)
Frame = +3 / +3
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C S+V ++DV K I GTS T A+ L
Sbjct: 1077 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKL 1256
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1257 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1355
Score = 58.3 bits (121), Expect(2) = 1e-031
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +3
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 936 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1064
>emb|X72292.1|ATEXOPB A.thaliana (clone GBGa483) mRNA for exopolygalacturonase
Length = 1652
Score = 100 bits (213), Expect(2) = 1e-031
Identities = 37/93 (39%), Positives = 58/93 (62%)
Frame = +3 / +2
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C S+V ++DV K I GTS T A+ L
Sbjct: 1040 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKL 1219
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1220 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1318
Score = 58.3 bits (121), Expect(2) = 1e-031
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +2
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 899 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 1027
>gb|AY091200.1| Arabidopsis thaliana putative exopolygalacturonase (At3g07850) mRNA,
complete cds
Length = 1366
Score = 100 bits (213), Expect(2) = 1e-031
Identities = 37/93 (39%), Positives = 58/93 (62%)
Frame = +3 / +1
Query: 147 ATKFLYQDVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVNDVVFKNIHGTSNTPEAITL 326
A+ L++D+TMDNVS P++IDQ+YCP C S+V ++DV K I GTS T A+ L
Sbjct: 988 ASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKL 1167
Query: 327 NCANNLPCQGVQLINVDIKYNRSDNKTMSVCKN 425
C+ +PC + L ++++ +N + +S C N
Sbjct: 1168 MCSKGVPCTNIALSDINLVHNGKEGPAVSACSN 1266
Score = 58.3 bits (121), Expect(2) = 1e-031
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDS 131
GHGIS+GSLGRY +E+ V+ V V C + T NG+RIK++ S
Sbjct: 847 GHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGS 975
>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete sequence
Length = 115851
Score = 102 bits (217), Expect(2) = 2e-031
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = +3 / -1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 111399 GHGISVGSLGKNKDEKDVKDLFVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMI 111220
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 111219 DVGKPINIDQKYCPHPPC 111166
Score = 55.6 bits (115), Expect(2) = 2e-031
Identities = 20/46 (43%), Positives = 31/46 (67%)
Frame = +3 / -3
Query: 252 SKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYN 389
S V + D+ KNI+GTS A+ L C+ + PC+ V+LI+++IK N
Sbjct: 111055 SHVQIQDLKLKNIYGTSKNKVAVNLQCSKSFPCKNVELIDINIKQN 110918
>ref|NM_127105.1| Arabidopsis thaliana polygalacturonase AT2G15450 mRNA, complete cds
Length = 1215
Score = 102 bits (217), Expect(2) = 4e-031
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 733 GHGISVGSLGKNKDEKDVKDLIVRDVIFNGTSDGIRIKNWESSASKILVSNFVYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 54.7 bits (113), Expect(2) = 4e-031
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYN 389
+ G S V + ++ KNI+GTS A+ L C+ PC+ V+LI+++IK N
Sbjct: 976 RKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQN 1125
>ref|NM_127106.1| Arabidopsis thaliana polygalacturonase AT2G15460 mRNA, complete cds
Length = 1209
Score = 102 bits (217), Expect(2) = 4e-031
Identities = 41/78 (52%), Positives = 57/78 (73%)
Frame = +3 / +1
Query: 3 GHGISVGSLGRYKDEKDVEDVKVTGCTLAGTTNGLRIKSYEDSKSSLKATKFLYQDVTMD 182
GHGISVGSLG+ KDEKDV+D+ V GT++G+RIK++E S S + + F+Y+++ M
Sbjct: 733 GHGISVGSLGKSKDEKDVKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMI 912
Query: 183 NVSYPIIIDQKYCPNNIC 236
+V PI IDQKYCP+ C
Sbjct: 913 DVGKPINIDQKYCPHPPC 966
Score = 54.7 bits (113), Expect(2) = 4e-031
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3 / +1
Query: 240 KSGASKVAVNDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLINVDIKYN 389
+ G S V + ++ KNI+GTS A+ L C+ PC+ V+LI+++IK N
Sbjct: 976 RKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQN 1125
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 777,200,465
Number of Sequences: 1013581
Number of extensions: 7191053
Number of successful extensions: 80183
Number of sequences better than 1.0e-020: 145
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 39062866930
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)