TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF543710.1| Arabidopsis thaliana elongation defective 1 ... 209 2e-054
emb|BX824982.1|CNS0A5MB Arabidopsis thaliana Full-length cD... 209 3e-054
gb|AY735623.1| Arabidopsis thaliana hypothetical protein AT... 210 3e-054
ref|NM_115580.3| Arabidopsis thaliana unknown protein AT3G5... 210 3e-054
gb|AY954853.1| Arabidopsis thaliana hypothetical protein (A... 210 3e-054
ref|NM_111689.3| Arabidopsis thaliana KOB1 (KOBITO) AT3G085... 209 3e-054
emb|BX842164.1|CNS09YB9 Arabidopsis thaliana Full-length cD... 152 4e-049
ref|NM_129708.1| Arabidopsis thaliana N-acetyltransferase A... 186 9e-046
gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J... 101 4e-044
emb|AL137080.2|ATF28O9 Arabidopsis thaliana DNA chromosome ... 97 4e-042
gb|AQ955270.1|AQ955270 LERAB32TR LERA Arabidopsis thaliana ... 101 1e-040
gb|AQ955269.1|AQ955269 LERAB32TF LERA Arabidopsis thaliana ... 87 2e-035
gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BA... 104 2e-034
gb|BH633280.1|BH633280 SALK_041130 Arabidopsis thaliana TDN... 97 2e-024
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 104 4e-021
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 104 4e-021
>gb|AF543710.1| Arabidopsis thaliana elongation defective 1 (ELD1) mRNA, complete cds
Length = 1626
Score = 209 bits (451), Expect(2) = 2e-054
Identities = 81/112 (72%), Positives = 98/112 (87%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+AFIIASTA++EEML WY E
Sbjct: 1099 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATDEEMLSWYRE 1278
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAK 338
VVW DK + KLLRKG+LTRIY+PM ++Q+L+ESGVF+S +++ ++ K
Sbjct: 1279 HVVWGDKDVKTKLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSKK 1434
Score = 150 bits (323), Expect = 4e-035
Identities = 72/100 (72%), Positives = 76/100 (76%)
Frame = -2 / -2
Query: 301 EVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAA 122
E+KTPDS IG MRV PFLRSF F+ LS HTT S YQ SISSS+AVDAII A
Sbjct: 1397 ELKTPDSFNACITTIGE*MRVRIPFLRSFVFTSLSPHTTCSRYQLSISSSVAVDAIINAD 1218
Query: 121 LSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
LSKSN+KHL TSSFVGL P RSRLDVKSEN YV*CRTAA
Sbjct: 1217 LSKSNIKHLFTSSFVGLQPHRSRLDVKSENFEYV*CRTAA 1098
Score = 105 bits (225), Expect = 1e-021
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -1 / -1
Query: 299 SEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS*CNYKSCS 120
+EDT F Q L N HW + ASQ++ P++ + + + PH+ F VPA HFF + * NYK S
Sbjct: 1395 AEDTRFFQCLYNNHW*IDASQNTLPKEFRLHVFVTPHNVFTVPA*HFFVSCC*RNYKCRS 1216
Query: 119 VKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIM 15
VK+ H+ S ++FFCRL +T+IT C + KF +C++
Sbjct: 1215 VKVQHKASFHVFFCRLTATSITPGC*VRKF*ICVV 1111
Score = 29.0 bits (57), Expect(2) = 2e-054
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3 / +1
Query: 483 TAVPPLSPPSLDEHRHHSE 539
+A+PPLSPP +++ R +E
Sbjct: 1552 SAIPPLSPPGMEQARFFTE 1608
>emb|BX824982.1|CNS0A5MB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH87ZB12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1752
Score = 209 bits (451), Expect(2) = 3e-054
Identities = 81/112 (72%), Positives = 98/112 (87%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+AFIIASTA++EEML WY E
Sbjct: 1047 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATDEEMLSWYRE 1226
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAK 338
VVW DK + KLLRKG+LTRIY+PM ++Q+L+ESGVF+S +++ ++ K
Sbjct: 1227 HVVWGDKDVKTKLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSKK 1382
Score = 150 bits (323), Expect = 4e-035
Identities = 72/100 (72%), Positives = 76/100 (76%)
Frame = -2 / -3
Query: 301 EVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAA 122
E+KTPDS IG MRV PFLRSF F+ LS HTT S YQ SISSS+AVDAII A
Sbjct: 1345 ELKTPDSFNACITTIGE*MRVRIPFLRSFVFTSLSPHTTCSRYQLSISSSVAVDAIINAD 1166
Query: 121 LSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
LSKSN+KHL TSSFVGL P RSRLDVKSEN YV*CRTAA
Sbjct: 1165 LSKSNIKHLFTSSFVGLQPHRSRLDVKSENFEYV*CRTAA 1046
Score = 105 bits (225), Expect = 1e-021
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -1 / -2
Query: 299 SEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS*CNYKSCS 120
+EDT F Q L N HW + ASQ++ P++ + + + PH+ F VPA HFF + * NYK S
Sbjct: 1343 AEDTRFFQCLYNNHW*IDASQNTLPKEFRLHVFVTPHNVFTVPA*HFFVSCC*RNYKCRS 1164
Query: 119 VKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIM 15
VK+ H+ S ++FFCRL +T+IT C + KF +C++
Sbjct: 1163 VKVQHKASFHVFFCRLTATSITPGC*VRKF*ICVV 1059
Score = 29.0 bits (57), Expect(2) = 3e-054
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 483 TAVPPLSPPSLDEHRHHSE 539
+A+PPLSPP +++ R +E
Sbjct: 1500 SAIPPLSPPGMEQARSFTE 1556
>gb|AY735623.1| Arabidopsis thaliana hypothetical protein AT3G57200 mRNA, complete
cds
Length = 1939
Score = 210 bits (452), Expect(2) = 3e-054
Identities = 84/120 (70%), Positives = 99/120 (82%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY +FSDLTSRRDRCGCKPTK DVKRCFML+FDRAAFIIASTAS EEML+WY E
Sbjct: 1192 AAVLHYTYPRFSDLTSRRDRCGCKPTKVDVKRCFMLEFDRAAFIIASTASSEEMLQWYRE 1371
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
VVWTD++L LKLLRKG+LTRIY PM I+Q LRE+GVF+S + A + + S ++ +
Sbjct: 1372 HVVWTDEKLKLKLLRKGILTRIYAPMVIIQELREAGVFSSVVIAAHKSPSKNSSTADSTS 1551
Score = 138 bits (295), Expect = 3e-031
Identities = 68/104 (65%), Positives = 76/104 (73%)
Frame = -2 / -3
Query: 313 AAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAI 134
A E+KTP S I +G MRV PFLRSF F+ SVHTT SLY SISS LAV+AI
Sbjct: 1502 AITTELKTPASLSSWIITMGA*MRVRIPFLRSFNFNFSSVHTTCSLYHCSISSELAVEAI 1323
Query: 133 IKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
I AALS S+MKHLLTS+ VGL PQRSRL+V+SENL V*C TAA
Sbjct: 1322 INAALSNSSMKHLLTSTLVGLQPQRSRLEVRSENLG*V*CSTAA 1191
Score = 24.9 bits (48), Expect(2) = 3e-054
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 471 DTNVTAVPPLSPPSLD 518
++ +AVPP SPP L+
Sbjct: 1624 ESQASAVPPQSPPGLE 1671
>ref|NM_115580.3| Arabidopsis thaliana unknown protein AT3G57200 mRNA, complete cds
Length = 1905
Score = 210 bits (452), Expect(2) = 3e-054
Identities = 84/120 (70%), Positives = 99/120 (82%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY +FSDLTSRRDRCGCKPTK DVKRCFML+FDRAAFIIASTAS EEML+WY E
Sbjct: 1192 AAVLHYTYPRFSDLTSRRDRCGCKPTKVDVKRCFMLEFDRAAFIIASTASSEEMLQWYRE 1371
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
VVWTD++L LKLLRKG+LTRIY PM I+Q LRE+GVF+S + A + + S ++ +
Sbjct: 1372 HVVWTDEKLKLKLLRKGILTRIYAPMVIIQELREAGVFSSVVIAAHKSPSKNSSTADSTS 1551
Score = 138 bits (295), Expect = 3e-031
Identities = 68/104 (65%), Positives = 76/104 (73%)
Frame = -2 / -2
Query: 313 AAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAI 134
A E+KTP S I +G MRV PFLRSF F+ SVHTT SLY SISS LAV+AI
Sbjct: 1502 AITTELKTPASLSSWIITMGA*MRVRIPFLRSFNFNFSSVHTTCSLYHCSISSELAVEAI 1323
Query: 133 IKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
I AALS S+MKHLLTS+ VGL PQRSRL+V+SENL V*C TAA
Sbjct: 1322 INAALSNSSMKHLLTSTLVGLQPQRSRLEVRSENLG*V*CSTAA 1191
Score = 24.9 bits (48), Expect(2) = 3e-054
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 471 DTNVTAVPPLSPPSLD 518
++ +AVPP SPP L+
Sbjct: 1624 ESQASAVPPQSPPGLE 1671
>gb|AY954853.1| Arabidopsis thaliana hypothetical protein (At3g57200) mRNA, complete
cds
Length = 1545
Score = 210 bits (452), Expect(2) = 3e-054
Identities = 84/120 (70%), Positives = 99/120 (82%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY +FSDLTSRRDRCGCKPTK DVKRCFML+FDRAAFIIASTAS EEML+WY E
Sbjct: 1045 AAVLHYTYPRFSDLTSRRDRCGCKPTKVDVKRCFMLEFDRAAFIIASTASSEEMLQWYRE 1224
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
VVWTD++L LKLLRKG+LTRIY PM I+Q LRE+GVF+S + A + + S ++ +
Sbjct: 1225 HVVWTDEKLKLKLLRKGILTRIYAPMVIIQELREAGVFSSVVIAAHKSPSKNSSTADSTS 1404
Score = 138 bits (295), Expect = 3e-031
Identities = 68/104 (65%), Positives = 76/104 (73%)
Frame = -2 / -2
Query: 313 AAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAI 134
A E+KTP S I +G MRV PFLRSF F+ SVHTT SLY SISS LAV+AI
Sbjct: 1355 AITTELKTPASLSSWIITMGA*MRVRIPFLRSFNFNFSSVHTTCSLYHCSISSELAVEAI 1176
Query: 133 IKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
I AALS S+MKHLLTS+ VGL PQRSRL+V+SENL V*C TAA
Sbjct: 1175 INAALSNSSMKHLLTSTLVGLQPQRSRLEVRSENLG*V*CSTAA 1044
Score = 24.9 bits (48), Expect(2) = 3e-054
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 471 DTNVTAVPPLSPPSLD 518
++ +AVPP SPP L+
Sbjct: 1477 ESQASAVPPQSPPGLE 1524
>ref|NM_111689.3| Arabidopsis thaliana KOB1 (KOBITO) AT3G08550 (KOB1) mRNA, complete
cds
Length = 1991
Score = 209 bits (451), Expect(2) = 3e-054
Identities = 81/112 (72%), Positives = 98/112 (87%)
Frame = +3 / +2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+AFIIASTA++EEML WY E
Sbjct: 1172 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATDEEMLSWYRE 1351
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAK 338
VVW DK + KLLRKG+LTRIY+PM ++Q+L+ESGVF+S +++ ++ K
Sbjct: 1352 HVVWGDKDVKTKLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSKK 1507
Score = 150 bits (323), Expect = 4e-035
Identities = 72/100 (72%), Positives = 76/100 (76%)
Frame = -2 / -3
Query: 301 EVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAA 122
E+KTPDS IG MRV PFLRSF F+ LS HTT S YQ SISSS+AVDAII A
Sbjct: 1470 ELKTPDSFNACITTIGE*MRVRIPFLRSFVFTSLSPHTTCSRYQLSISSSVAVDAIINAD 1291
Query: 121 LSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
LSKSN+KHL TSSFVGL P RSRLDVKSEN YV*CRTAA
Sbjct: 1290 LSKSNIKHLFTSSFVGLQPHRSRLDVKSENFEYV*CRTAA 1171
Score = 105 bits (225), Expect = 1e-021
Identities = 43/95 (45%), Positives = 64/95 (67%)
Frame = -1 / -2
Query: 299 SEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS*CNYKSCS 120
+EDT F Q L N HW + ASQ++ P++ + + + PH+ F VPA HFF + * NYK S
Sbjct: 1468 AEDTRFFQCLYNNHW*IDASQNTLPKEFRLHVFVTPHNVFTVPA*HFFVSCC*RNYKCRS 1289
Query: 119 VKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIM 15
VK+ H+ S ++FFCRL +T+IT C + KF +C++
Sbjct: 1288 VKVQHKASFHVFFCRLTATSITPGC*VRKF*ICVV 1184
Score = 29.0 bits (57), Expect(2) = 3e-054
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 483 TAVPPLSPPSLDEHRHHSE 539
+A+PPLSPP +++ R +E
Sbjct: 1625 SAIPPLSPPGMEQARFFTE 1681
>emb|BX842164.1|CNS09YB9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH76ZA05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1983
Score = 152 bits (327), Expect(3) = 4e-049
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+AFIIASTA++EEML WY E
Sbjct: 1194 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATDEEMLSWYRE 1373
Query: 183 RVVWTDKQ 206
VVW DK+
Sbjct: 1374 HVVWGDKE 1397
Score = 116 bits (248), Expect(2) = 3e-030
Identities = 54/67 (80%), Positives = 56/67 (83%)
Frame = -2 / -3
Query: 202 LSVHTTRSLYQRSISSSLAVDAIIKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVY 23
LS HTT S YQ SISSS+AVDAII A LSKSN+KHL TSSFVGL P RSRLDVKSEN Y
Sbjct: 1393 LSPHTTCSRYQLSISSSVAVDAIINADLSKSNIKHLFTSSFVGLQPHRSRLDVKSENFEY 1214
Query: 22 V*CRTAA 2
V*CRTAA
Sbjct: 1213 V*CRTAA 1193
Score = 60.6 bits (126), Expect(3) = 4e-049
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +3 / +2
Query: 216 KLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAK 338
KLLRKG+LTRIY+PM ++Q+L+ESGVF+S +++ ++ K
Sbjct: 1409 KLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSKK 1531
Score = 37.7 bits (76), Expect(2) = 3e-030
Identities = 20/40 (50%), Positives = 21/40 (52%)
Frame = -2 / -1
Query: 301 EVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTR 182
E+KTPDS IG MRV PFLRSF L T R
Sbjct: 1494 ELKTPDSFNACITTIGE*MRVRIPFLRSFALHALCHPTQR 1375
Score = 29.0 bits (57), Expect(3) = 4e-049
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3 / +2
Query: 483 TAVPPLSPPSLDEHRHHSE 539
+A+PPLSPP +++ R +E
Sbjct: 1649 SAIPPLSPPGMEQARFFTE 1705
>ref|NM_129708.1| Arabidopsis thaliana N-acetyltransferase AT2G41450 mRNA, complete cds
Length = 2976
Score = 186 bits (400), Expect = 9e-046
Identities = 73/86 (84%), Positives = 80/86 (93%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AA+LHYTY+KFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRAAFIIAST++ EEML+WY E
Sbjct: 2710 AAILHYTYSKFSDLTSRRDRCGCKPTKKDVKRCFMLDFDRAAFIIASTSTSEEMLQWYRE 2889
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPM 260
RVVWTD L LKLLRKG+LTRIY PM
Sbjct: 2890 RVVWTDDNLILKLLRKGILTRIYAPM 2967
Score = 116 bits (249), Expect = 6e-025
Identities = 56/88 (63%), Positives = 65/88 (73%)
Frame = -2 / -2
Query: 265 IVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAALSKSNMKHLLTS 86
+ IG MRV PFLRSF+ SVHTT SLY SISS + V+A++ AALSKS+MKHLLTS
Sbjct: 2972 LTIGA*MRVRIPFLRSFRIKLSSVHTTLSLYHWSISSEVEVEAMMNAALSKSSMKHLLTS 2793
Query: 85 SFVGLHPQRSRLDVKSENLVYV*CRTAA 2
FVGL P RSRL+V+SEN V* R AA
Sbjct: 2792 FFVGLQPHRSRLEVRSENFE*V**RIAA 2709
Score = 103 bits (220), Expect = 6e-021
Identities = 46/86 (53%), Positives = 65/86 (75%)
Frame = -1 / -1
Query: 260 HWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS*CNYKSCSVKI*HETSLNIFF 81
HW + ASQ+SFP+K * Q+++ P++SF VP +HF + S* N + SVK+*HETSL+IFF
Sbjct: 2967 HWCINASQNSFPKKF*DQIIVSPYNSFSVPLEHFL*S*S*SNDECGSVKV*HETSLDIFF 2788
Query: 80 CRLASTAITSRCQI*KFSVCIMQNCS 3
C A+T+ITS +I*KF V +++N S
Sbjct: 2787 CWFAATSITS*SKI*KFRVSVVKNRS 2710
>gb|AC004625.3| Arabidopsis thaliana chromosome 2 clone T26J13 map CIC11C08, complete
sequence
Length = 42499
Score = 101 bits (216), Expect(3) = 4e-044
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AA+LHYTY+KFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 17979 AAILHYTYSKFSDLTSRRDRCGCKPTKKDVKRCFMLDFDRA 18101
Score = 87.2 bits (184), Expect(3) = 4e-044
Identities = 35/45 (77%), Positives = 39/45 (86%)
Frame = +3 / +1
Query: 126 AFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
AFIIAST++ EEML+WY ERVVWTD L LKLLRKG+LTRIY PM
Sbjct: 18181 AFIIASTSTSEEMLQWYRERVVWTDDNLILKLLRKGILTRIYAPM 18315
Score = 62.5 bits (130), Expect(2) = 3e-021
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = -2 / -1
Query: 124 ALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
ALSKS+MKHLLTS FVGL P RSRL+V+SEN V* R AA
Sbjct: 18100 ALSKSSMKHLLTSFFVGLQPHRSRLEVRSENFE*V**RIAA 17978
Score = 61.6 bits (128), Expect(2) = 3e-021
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = -2 / -3
Query: 265 IVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAALSKSNMK 101
+ IG MRV PFLRSF+ SVHTT SLY SISS + V+A++ A +K+ K
Sbjct: 18320 LTIGA*MRVRIPFLRSFRIKLSSVHTTLSLYHWSISSEVEVEAMMNACRNKNKYK 18156
Score = 29.9 bits (59), Expect(3) = 4e-044
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3 / +1
Query: 264 IVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
I+Q LRE+GVF+S + + +++ S T++
Sbjct: 18394 IIQELREAGVFSSVVTSAHMSLSKNRSNSSTSS 18492
>emb|AL137080.2|ATF28O9 Arabidopsis thaliana DNA chromosome 3, BAC clone F28O9
Length = 85710
Score = 96.8 bits (205), Expect(5) = 4e-042
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTY +FSDLTSRRDRCGCKPTK DVKRCFML+FDRA
Sbjct: 10807 AAVLHYTYPRFSDLTSRRDRCGCKPTKVDVKRCFMLEFDRA 10929
Score = 58.3 bits (121), Expect(5) = 4e-042
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3 / +1
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
Y E VVWTD++L LKLLRKG+LTRIY PM
Sbjct: 11146 YREHVVWTDEKLKLKLLRKGILTRIYAPM 11232
Score = 38.2 bits (77), Expect(5) = 4e-042
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +1
Query: 126 AFIIASTASEEEMLRWY 176
AFIIASTAS EEML+WY
Sbjct: 11017 AFIIASTASSEEMLQWY 11067
Score = 29.0 bits (57), Expect(5) = 4e-042
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3 / +1
Query: 240 TRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
T + I+Q LRE+GVF+S + A + + S ++ +
Sbjct: 11296 TSYHLLQVIIQELREAGVFSSVVIAAHKSPSKNSSTADSTS 11418
Score = 24.9 bits (48), Expect(5) = 4e-042
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 471 DTNVTAVPPLSPPSLD 518
++ +AVPP SPP L+
Sbjct: 11491 ESQASAVPPQSPPGLE 11538
>gb|AQ955270.1|AQ955270 LERAB32TR LERA Arabidopsis thaliana genomic clone LERAB32, DNA
sequence
Length = 754
Score = 101 bits (216), Expect(2) = 1e-040
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +3 / +2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AA+LHYTY+KFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 344 AAILHYTYSKFSDLTSRRDRCGCKPTKKDVKRCFMLDFDRA 466
Score = 87.2 bits (184), Expect(2) = 1e-040
Identities = 35/45 (77%), Positives = 39/45 (86%)
Frame = +3 / +3
Query: 126 AFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
AFIIAST++ EEML+WY ERVVWTD L LKLLRKG+LTRIY PM
Sbjct: 546 AFIIASTSTSEEMLQWYRERVVWTDDNLILKLLRKGILTRIYAPM 680
Score = 62.5 bits (130), Expect(2) = 3e-021
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = -2 / -2
Query: 124 ALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
ALSKS+MKHLLTS FVGL P RSRL+V+SEN V* R AA
Sbjct: 465 ALSKSSMKHLLTSFFVGLQPHRSRLEVRSENFE*V**RIAA 343
Score = 61.6 bits (128), Expect(2) = 3e-021
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = -2 / -1
Query: 265 IVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIKAALSKSNMK 101
+ IG MRV PFLRSF+ SVHTT SLY SISS + V+A++ A +K+ K
Sbjct: 685 LTIGA*MRVRIPFLRSFRIKLSSVHTTLSLYHWSISSEVEVEAMMNACRNKNKYK 521
>gb|AQ955269.1|AQ955269 LERAB32TF LERA Arabidopsis thaliana genomic clone LERAB32, DNA
sequence
Length = 647
Score = 87.2 bits (184), Expect(3) = 2e-035
Identities = 35/45 (77%), Positives = 39/45 (86%)
Frame = +3 / -3
Query: 126 AFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
AFIIAST++ EEML+WY ERVVWTD L LKLLRKG+LTRIY PM
Sbjct: 483 AFIIASTSTSEEMLQWYRERVVWTDDNLILKLLRKGILTRIYAPM 349
Score = 72.5 bits (152), Expect(3) = 2e-035
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +3 / -2
Query: 42 LTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
LTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 646 LTSRRDRCGCKPTKKDVKRCFMLDFDRA 563
Score = 29.9 bits (59), Expect(3) = 2e-035
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3 / -3
Query: 264 IVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
I+Q LRE+GVF+S + + +++ S T++
Sbjct: 270 IIQELREAGVFSSVVTSAHMSLSKNRSNSSTSS 172
>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence,
complete sequence
Length = 90721
Score = 104 bits (221), Expect(3) = 2e-034
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIA 140
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+ I +
Sbjct: 9576 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSVSIFS 9713
Score = 79.0 bits (166), Expect(3) = 4e-022
Identities = 34/40 (85%), Positives = 35/40 (87%)
Frame = -2 / -1
Query: 121 LSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
LSKSN+KHL TSSFVGL P RSRLDVKSEN YV*CRTAA
Sbjct: 9694 LSKSNIKHLFTSSFVGLQPHRSRLDVKSENFEYV*CRTAA 9575
Score = 53.3 bits (110), Expect(3) = 2e-034
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +3 / +2
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
Y E VVW DK + KLLRKG+LTRIY+PM
Sbjct: 9983 YREHVVWGDKDVKTKLLRKGILTRIYSPM 10069
Score = 34.5 bits (69), Expect(3) = 4e-022
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1 / -1
Query: 260 HWGVYASQHSFPQKL*VQLLIGPHDSFIVPAK 165
HW + ASQ++ P++ + + + PH+ F VP +
Sbjct: 10069 HW*IDASQNTLPKEFRLHVFVTPHNVFTVPTQ 9974
Score = 30.9 bits (61), Expect(3) = 4e-022
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2 / -2
Query: 175 YQRSISSSLAVDAIIKA 125
YQ SISSS+AVDAII A
Sbjct: 9855 YQLSISSSVAVDAIINA 9805
Score = 28.6 bits (56), Expect(3) = 2e-034
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2 / +1
Query: 131 YNCINC**RRNASLVQ 178
YNC+N *RRNA LV+
Sbjct: 9811 YNCVNSN*RRNAKLVR 9858
>gb|BH633280.1|BH633280 SALK_041130 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_041130, DNA sequence
Length = 447
Score = 96.8 bits (205), Expect(2) = 2e-024
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3 / +2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTY +FSDLTSRRDRCGCKPTK DVKRCFML+FDRA
Sbjct: 107 AAVLHYTYPRFSDLTSRRDRCGCKPTKVDVKRCFMLEFDRA 229
Score = 38.2 bits (77), Expect(2) = 2e-024
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +2
Query: 126 AFIIASTASEEEMLRWY 176
AFIIASTAS EEML+WY
Sbjct: 317 AFIIASTASSEEMLQWY 367
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 104 bits (221), Expect = 4e-021
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIA 140
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+ I +
Sbjct: 2594634 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSVSIFS 2594771
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 104 bits (221), Expect = 4e-021
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +3 / +2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIA 140
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+ I +
Sbjct: 2598659 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSVSIFS 2598796
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,638,878,536
Number of Sequences: 1013581
Number of extensions: 22239124
Number of successful extensions: 142343
Number of sequences better than 1.0e-020: 18
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 50721269324
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)