TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY099603.1| Arabidopsis thaliana short chain alcohol deh... 176 6e-043
gb|AY082344.1| Arabidopsis thaliana short-chain dehydrogena... 176 6e-043
gb|AY082345.1| Arabidopsis thaliana short-chain dehydrogena... 176 6e-043
gb|BT003412.1| Arabidopsis thaliana short chain alcohol deh... 176 6e-043
gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 B... 176 6e-043
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 176 6e-043
ref|NM_104113.3| Arabidopsis thaliana ABA2 (ABA DEFICIENT 2... 176 6e-043
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 176 6e-043
emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome... 81 1e-028
ref|NM_115027.1| Arabidopsis thaliana oxidoreductase AT3G51... 81 1e-028
dbj|AB016889.1| Arabidopsis thaliana genomic DNA, chromosom... 66 9e-022
ref|NM_113588.2| Arabidopsis thaliana oxidoreductase AT3G26... 66 1e-021
gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M... 72 6e-021
ref|NM_130281.3| Arabidopsis thaliana oxidoreductase AT2G47... 72 6e-021
dbj|AK175374.1| Arabidopsis thaliana mRNA for putative alco... 72 6e-021
emb|AX412402.1| Sequence 166 from Patent WO0222675 72 6e-021
emb|AX412739.1| Sequence 503 from Patent WO0222675 72 6e-021
emb|AX506250.1| Sequence 945 from Patent WO0216655 72 6e-021
gb|BT010410.1| Arabidopsis thaliana At2g47130 mRNA, complet... 72 6e-021
gb|CB253475.1|CB253475 96-E012994-019-004-P23-SP6r MPIZ-ADI... 72 6e-021
gb|AI994137.1|AI994137 701499352 A. thaliana, Ohio State cl... 72 6e-021
>gb|AY099603.1| Arabidopsis thaliana short chain alcohol dehydrogenase, putative
(At1g52340) mRNA, complete cds
Length = 1176
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 626 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 805
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 806 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 973
>gb|AY082344.1| Arabidopsis thaliana short-chain dehydrogenase/reductase (ABA2)
mRNA, complete cds
Length = 1179
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 623 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 802
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 803 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 970
>gb|AY082345.1| Arabidopsis thaliana short-chain dehydrogenase/reductase (ABA2) gene,
complete cds
Length = 2040
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / +3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 1383 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 1562
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 1563 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 1730
>gb|BT003412.1| Arabidopsis thaliana short chain alcohol dehydrogenase, putative
(At1g52340) mRNA, complete cds
Length = 902
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 505 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 684
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 685 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 852
>gb|AC037424.10|AC037424 Arabidopsis thaliana chromosome 1 BAC F19K6 genomic sequence, complete
sequence
Length = 75948
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / +3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 42723 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 42902
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 42903 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 43070
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / -1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 3849614 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 3849435
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 3849434 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 3849267
>ref|NM_104113.3| Arabidopsis thaliana ABA2 (ABA DEFICIENT 2); oxidoreductase
AT1G52340 (ABA2) mRNA, complete cds
Length = 1177
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 626 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 805
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 806 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 973
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 176 bits (379), Expect = 6e-043
Identities = 70/116 (60%), Positives = 88/116 (75%)
Frame = +2 / -2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH Y SKHAV+GLT+SVAAELG+HG+RVNCVSPYAV T L++ HLP+ R +DA F
Sbjct: 19494019 GPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGF 19493840
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
F ANLKGV+ +DVA AVL+LASD++RY+S NLM+DGGFT N++ + F
Sbjct: 19493839 RNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVF 19493672
>emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, BAC clone T18N14
Length = 79867
Score = 80.8 bits (170), Expect(2) = 1e-028
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
GPH YTASKHA+VGLTK+ A ELG++G+RVNC+SP+ V T++
Sbjct: 55178 GPHAYTASKHAIVGLTKNAACELGKYGIRVNCISPFGVATSM 55053
Score = 68.0 bits (142), Expect(2) = 1e-028
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = +2 / -3
Query: 209 DDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
DD +++ FV ANLKG D+A+A LYLASDE++YV+ NL+VDGG T N
Sbjct: 55010 DDDVEEMEEFVRSLANLKGETLRANDIAEAALYLASDESKYVNGHNLVVDGGVTTARN 54837
>ref|NM_115027.1| Arabidopsis thaliana oxidoreductase AT3G51680 mRNA, complete cds
Length = 912
Score = 80.8 bits (170), Expect(2) = 1e-028
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
GPH YTASKHA+VGLTK+ A ELG++G+RVNC+SP+ V T++
Sbjct: 556 GPHAYTASKHAIVGLTKNAACELGKYGIRVNCISPFGVATSM 681
Score = 68.0 bits (142), Expect(2) = 1e-028
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = +2 / +1
Query: 209 DDALKDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
DD +++ FV ANLKG D+A+A LYLASDE++YV+ NL+VDGG T N
Sbjct: 724 DDDVEEMEEFVRSLANLKGETLRANDIAEAALYLASDESKYVNGHNLVVDGGVTTARN 897
>dbj|AB016889.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDJ14
Length = 87630
Score = 66.1 bits (138), Expect(2) = 9e-022
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = +2 / +3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
GPH Y+ SK + G+ K+VA+EL +HG+R+NC+SP +PT L++
Sbjct: 11010 GPHAYSISKFTIPGVVKTVASELCKHGLRINCISPAGIPTPLTL 11141
Score = 59.3 bits (123), Expect(2) = 9e-022
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +2 / +3
Query: 221 KDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
+ LA V LKG DVA+A LYLASD+A++V+ NL+VDGGFT
Sbjct: 11184 EQLLAIVNATGELKGEKCEEIDVAKAALYLASDDAKFVTGHNLVVDGGFT 11333
>ref|NM_113588.2| Arabidopsis thaliana oxidoreductase AT3G26760 mRNA, complete cds
Length = 1228
Score = 66.1 bits (138), Expect(2) = 1e-021
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSM 181
GPH Y+ SK + G+ K+VA+EL +HG+R+NC+SP +PT L++
Sbjct: 595 GPHAYSISKFTIPGVVKTVASELCKHGLRINCISPAGIPTPLTL 726
Score = 59.3 bits (123), Expect(2) = 1e-021
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +2 / +1
Query: 221 KDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFT 370
+ LA V LKG DVA+A LYLASD+A++V+ NL+VDGGFT
Sbjct: 769 EQLLAIVNATGELKGEKCEEIDVAKAALYLASDDAKFVTGHNLVVDGGFT 918
>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete
sequence
Length = 106329
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 9634 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 9762
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 9820 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 9939
>ref|NM_130281.3| Arabidopsis thaliana oxidoreductase AT2G47130 mRNA, complete cds
Length = 905
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 497 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 625
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +2
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 683 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 802
>dbj|AK175374.1| Arabidopsis thaliana mRNA for putative alcohol dehydrogenase,
complete cds, clone: RAFL21-81-B04
Length = 896
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 515 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 643
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +2
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 701 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 820
>emb|AX412402.1| Sequence 166 from Patent WO0222675
Length = 774
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 457 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 585
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 643 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 762
>emb|AX412739.1| Sequence 503 from Patent WO0222675
Length = 774
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 457 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 585
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 643 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 762
>emb|AX506250.1| Sequence 945 from Patent WO0216655
Length = 774
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 457 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 585
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 643 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 762
>gb|BT010410.1| Arabidopsis thaliana At2g47130 mRNA, complete cds
Length = 774
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / +1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 457 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 585
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 643 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 762
>gb|CB253475.1|CB253475 96-E012994-019-004-P23-SP6r MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768P234Q 3-PRIME, mRNA sequence
Length = 655
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / -2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 381 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 253
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / -2
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 195 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 76
>gb|AI994137.1|AI994137 701499352 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701499352, mRNA sequence
Length = 557
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
GPH YTASKHA++GL KS LG++G+RVN V+PYAV TA++
Sbjct: 375 GPHAYTASKHALLGLVKSACGGLGKYGIRVNGVAPYAVATAIN 247
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2 / -3
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAV 376
LKGV VA+A L+LASD++ YVS NL VDGG++ V
Sbjct: 189 LKGVVLKARHVAEAALFLASDDSAYVSGQNLAVDGGYSVV 70
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 952,378,277
Number of Sequences: 1013581
Number of extensions: 10731724
Number of successful extensions: 108108
Number of sequences better than 1.0e-020: 23
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 39804566935
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)