TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071483.2.1
(531 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI993885.1|AI993885 701515307 A. thaliana, Ohio State cl... 153 5e-036
gb|CF652954.1|CF652954 86-L020578-066-004-K22-SP6P MPIZ-ADI... 153 5e-036
gb|AY086919.1| Arabidopsis thaliana clone 29476 mRNA, compl... 153 5e-036
ref|NM_120678.2| Arabidopsis thaliana lipid binding AT5G059... 153 5e-036
gb|AU226144.1|AU226144 AU226144 RAFL14 Arabidopsis thaliana... 153 5e-036
gb|CF652808.1|CF652808 78-L020164-066-001-K20-SP6P MPIZ-ADI... 153 5e-036
gb|BP635293.1|BP635293 BP635293 RAFL17 Arabidopsis thaliana... 153 5e-036
gb|CB256721.1|CB256721 63-E012737-027-002-M15-T7R MPIZ-ADIS... 152 6e-036
gb|CF651632.1|CF651632 09-L020361-066-002-B03-SP6P MPIZ-ADI... 152 6e-036
gb|BT002445.1| Arabidopsis thaliana putative protein (At3g5... 152 6e-036
gb|AY088350.1| Arabidopsis thaliana clone 5920 mRNA, comple... 152 6e-036
gb|BT006519.1| Arabidopsis thaliana At3g53980 gene, complet... 152 6e-036
ref|NM_115258.2| Arabidopsis thaliana lipid binding AT3G539... 152 6e-036
ref|NM_180369.2| Arabidopsis thaliana lipid binding AT3G539... 152 6e-036
gb|AV531347.1|AV531347 AV531347 Arabidopsis thaliana flower... 149 8e-035
dbj|AB017060.1| Arabidopsis thaliana genomic DNA, chromosom... 143 5e-033
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 143 5e-033
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 143 5e-033
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 142 7e-033
emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome ... 142 7e-033
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 142 7e-033
gb|T22959.1|T22959 4967 Lambda-PRL2 Arabidopsis thaliana cD... 138 9e-032
gb|AA395753.1|AA395753 25741 Lambda-PRL2 Arabidopsis thalia... 99 4e-031
gb|BP580606.1|BP580606 BP580606 RAFL14 Arabidopsis thaliana... 136 4e-031
gb|AA713282.1|AA713282 32842 Lambda-PRL2 Arabidopsis thalia... 126 6e-029
gb|N96987.1|N96987 22152 Lambda-PRL2 Arabidopsis thaliana c... 116 3e-028
gb|AV820674.1|AV820674 AV820674 RAFL11 Arabidopsis thaliana... 78 4e-024
gb|BP582052.1|BP582052 BP582052 RAFL14 Arabidopsis thaliana... 65 1e-022
gb|BP622455.1|BP622455 BP622455 RAFL17 Arabidopsis thaliana... 107 3e-022
>gb|AI993885.1|AI993885 701515307 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701515307, mRNA sequence
Length = 492
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / +3
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 66 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 245
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 246 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 353
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / -3
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 349 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 170
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 169 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 74
>gb|CF652954.1|CF652954 86-L020578-066-004-K22-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K224Q 5-PRIME, mRNA sequence
Length = 584
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / +1
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 55 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 234
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 235 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 342
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / -1
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 338 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 159
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 158 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 63
>gb|AY086919.1| Arabidopsis thaliana clone 29476 mRNA, complete sequence
Length = 513
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / +2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 89 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 268
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 269 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 376
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / -1
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 372 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 193
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 192 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 97
>ref|NM_120678.2| Arabidopsis thaliana lipid binding AT5G05960 mRNA, complete cds
Length = 515
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / +2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 89 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 268
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 269 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 376
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / -3
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 372 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 193
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 192 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 97
>gb|AU226144.1|AU226144 AU226144 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-P22 3',
mRNA sequence
Length = 435
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / -2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 425 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 246
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 245 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 138
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / +1
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 142 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 321
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 322 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 417
>gb|CF652808.1|CF652808 78-L020164-066-001-K20-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K201Q 5-PRIME, mRNA sequence
Length = 430
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / +1
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 64 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 243
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 244 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 351
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / -3
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 347 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 168
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 167 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 72
>gb|BP635293.1|BP635293 BP635293 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-37-L10 3',
mRNA sequence
Length = 435
Score = 153 bits (328), Expect = 5e-036
Identities = 57/96 (59%), Positives = 75/96 (78%)
Frame = -2 / -2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 425 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 246
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
AR++G KPE+++TIPKRCN+A+RPVGYKCG YTLP*
Sbjct: 245 ARSSGAKPEISMTIPKRCNIANRPVGYKCGAYTLP* 138
Score = 103 bits (220), Expect = 4e-021
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1 / +1
Query: 232 GSV*SPHL*PTGRSAMLQRLGMVMATSGLIPAALAVPDSMTAHRQLGLCPMVCTAEQQLL 411
G V*+PHL*PTGR AMLQRLG+V+ SG P LAV +SMTA R G CP+ T QQ+
Sbjct: 142 GRV*APHL*PTGRLAMLQRLGIVIEISGFAPELLAVEESMTAQRHFGFCPICFTRAQQIA 321
Query: 412 VGVDCGSSAAEMHGAILSATLSAEALPHSPXP 507
+ S AA GA A+LS LPHSP P
Sbjct: 322 DTLADVSCAAIAQGANFMASLSGGFLPHSPAP 417
>gb|CB256721.1|CB256721 63-E012737-027-002-M15-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772M152Q 5-PRIME, mRNA sequence
Length = 578
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 106 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 285
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 286 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 405
>gb|CF651632.1|CF651632 09-L020361-066-002-B03-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001B032Q 5-PRIME, mRNA sequence
Length = 635
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +2
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 86 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 265
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 266 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 385
>gb|BT002445.1| Arabidopsis thaliana putative protein (At3g53980) mRNA, complete
cds
Length = 589
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 112 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 291
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 292 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 411
>gb|AY088350.1| Arabidopsis thaliana clone 5920 mRNA, complete sequence
Length = 593
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +2
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 113 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 292
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 293 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 412
>gb|BT006519.1| Arabidopsis thaliana At3g53980 gene, complete cds
Length = 345
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 46 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 225
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 226 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 345
>ref|NM_115258.2| Arabidopsis thaliana lipid binding AT3G53980 transcript variant
AT3G53980.1 mRNA, complete cds
Length = 592
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 112 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 291
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 292 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 411
>ref|NM_180369.2| Arabidopsis thaliana lipid binding AT3G53980 transcript variant
AT3G53980.2 mRNA, complete cds
Length = 555
Score = 152 bits (327), Expect = 6e-036
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / +3
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 102 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 281
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 282 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 401
>gb|AV531347.1|AV531347 AV531347 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB019h11F 3', mRNA sequence
Length = 542
Score = 149 bits (319), Expect = 8e-035
Identities = 56/100 (56%), Positives = 71/100 (71%)
Frame = -2 / -1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 479 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 300
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKC YTLP*
Sbjct: 299 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCEAYTLP* 180
>dbj|AB017060.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18J17
Length = 54252
Score = 143 bits (306), Expect = 5e-033
Identities = 52/90 (57%), Positives = 70/90 (77%)
Frame = -2 / +2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 23207 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 23386
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCG 246
AR++G KPE+++TIPKRCN+A+RPVGYKCG
Sbjct: 23387 ARSSGAKPEISMTIPKRCNIANRPVGYKCG 23476
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 143 bits (306), Expect = 5e-033
Identities = 52/90 (57%), Positives = 70/90 (77%)
Frame = -2 / +2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 1679357 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 1679536
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCG 246
AR++G KPE+++TIPKRCN+A+RPVGYKCG
Sbjct: 1679537 ARSSGAKPEISMTIPKRCNIANRPVGYKCG 1679626
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 143 bits (306), Expect = 5e-033
Identities = 52/90 (57%), Positives = 70/90 (77%)
Frame = -2 / +1
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 1790320 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 1790499
Query: 335 ARAAGIKPEVAITIPKRCNMADRPVGYKCG 246
AR++G KPE+++TIPKRCN+A+RPVGYKCG
Sbjct: 1790500 ARSSGAKPEISMTIPKRCNIANRPVGYKCG 1790589
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 142 bits (305), Expect = 7e-033
Identities = 52/94 (55%), Positives = 67/94 (71%)
Frame = -2 / -3
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 19951609 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 19951430
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCG 246
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG
Sbjct: 19951429 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCG 19951328
>emb|AL132960.2|ATF5K20 Arabidopsis thaliana DNA chromosome 3, BAC clone F5K20
Length = 119407
Score = 142 bits (305), Expect = 7e-033
Identities = 52/94 (55%), Positives = 67/94 (71%)
Frame = -2 / -1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 90667 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 90488
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCG 246
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG
Sbjct: 90487 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCG 90386
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 142 bits (305), Expect = 7e-033
Identities = 52/94 (55%), Positives = 67/94 (71%)
Frame = -2 / -1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 19999136 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 19998957
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCG 246
LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG
Sbjct: 19998956 LSDTAKASGVDPEVALTIPKRCNFANRPVGYKCG 19998855
>gb|T22959.1|T22959 4967 Lambda-PRL2 Arabidopsis thaliana cDNA clone 108E5T7, mRNA
sequence
Length = 509
Score = 138 bits (297), Expect = 9e-032
Identities = 52/98 (53%), Positives = 66/98 (67%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA+
Sbjct: 94 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFXQNPKCLCAIX 273
Query: 347 LSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTL 234
LS TA+A+G+ PEVA+TIPKRCN RPVGYK G YT+
Sbjct: 274 LSDTAKASGVDPEVALTIPKRCNFGXRPVGYKXGGYTI 387
>gb|AA395753.1|AA395753 25741 Lambda-PRL2 Arabidopsis thaliana cDNA clone 286F9T7 3', mRNA
sequence
Length = 532
Score = 99.1 bits (210), Expect(2) = 4e-031
Identities = 36/76 (47%), Positives = 50/76 (65%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+++APC AA D S CC+ + Q+P CLCA++
Sbjct: 94 LIGTVVDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 273
Query: 347 LSGTARAAGIKPEVAI 300
LS TA+A+G+ PEVA+
Sbjct: 274 LSDTAKASGVDPEVAL 321
Score = 57.4 bits (119), Expect(2) = 4e-031
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = -2 / +3
Query: 302 ITIPKRCNMADRPVGYKCGDYTLP* 228
+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 318 LTIPKRCNFANRPVGYKCGAYTLP* 392
>gb|BP580606.1|BP580606 BP580606 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-28-F01 3',
mRNA sequence
Length = 396
Score = 136 bits (292), Expect = 4e-031
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = -2 / -2
Query: 476 DRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGTARAAGIKPEVAIT 297
DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS TAR++G KPE+++T
Sbjct: 386 DREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSSTARSSGAKPEISMT 207
Query: 296 IPKRCNMADRPVGYKCGDYTLP* 228
IPKRCN+A+RPVGYKCG YTLP*
Sbjct: 206 IPKRCNIANRPVGYKCGAYTLP* 138
>gb|AA713282.1|AA713282 32842 Lambda-PRL2 Arabidopsis thaliana cDNA clone 248D20T7, mRNA
sequence
Length = 492
Score = 126 bits (269), Expect(2) = 6e-029
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = -2 / +2
Query: 515 VAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGT 336
+ +G GECGR DR A+++APC AA D + ++ CC+ V +GQ+P CLCAVMLS T
Sbjct: 68 MVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSST 247
Query: 335 ARAAGIKPEVAITIPKRCNMADRP 264
AR++G KPE+++TIPKRCN+A+RP
Sbjct: 248 ARSSGAKPEISMTIPKRCNIANRP 319
Score = 23.1 bits (44), Expect(2) = 6e-029
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2 / +3
Query: 266 PVGYKCG 246
PVGYKCG
Sbjct: 318 PVGYKCG 338
>gb|N96987.1|N96987 22152 Lambda-PRL2 Arabidopsis thaliana cDNA clone 242G16T7, mRNA
sequence
Length = 496
Score = 116 bits (248), Expect(2) = 3e-028
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = -2 / +1
Query: 527 VIAGVAHGXGECGRASADRVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVM 348
+I V G GECGR+S D A+ +APC AA D S CC+ + Q+P CLCA++
Sbjct: 94 LIGTVVDGAGECGRSSPDNEAMXLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAIL 273
Query: 347 LSGTARAAGIKPEVAITIPKRCN 279
LS TA+A+G+ PEVA+TIPKRCN
Sbjct: 274 LSDTAKASGVDPEVALTIPKRCN 342
Score = 30.4 bits (60), Expect(2) = 3e-028
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / +2
Query: 275 ADRPVGYKCGD 243
A+RPVGYKCGD
Sbjct: 347 ANRPVGYKCGD 379
>gb|AV820674.1|AV820674 AV820674 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-11-K20 3',
mRNA sequence
Length = 421
Score = 77.6 bits (163), Expect(2) = 4e-024
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = -2 / -3
Query: 338 TARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 290 TAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 180
Score = 55.1 bits (114), Expect(2) = 4e-024
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2 / -2
Query: 467 ALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLS 342
A+++APC AA D S CC+ + Q+P CLCA++LS
Sbjct: 420 AMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAILLS 295
>gb|BP582052.1|BP582052 BP582052 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-34-J16 3',
mRNA sequence
Length = 411
Score = 65.2 bits (136), Expect(2) = 1e-022
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = -2 / -2
Query: 329 AAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
++G KPE+++TIPKR N+A+RPVGYKCG YTLP*
Sbjct: 239 SSGAKPEISMTIPKRFNIANRPVGYKCGAYTLP* 138
Score = 62.0 bits (129), Expect(2) = 1e-022
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = -2 / -3
Query: 473 RVALRMAPCISAADDPQSTPTSSCCSAVHTIGQSPSCLCAVMLSGTARA 327
R A+++ PC AA D + ++ CC+ V +GQ+P CLCAV+LS T RA
Sbjct: 382 REAIKLPPCAMAAQDTSAKVSAICCARVKHMGQNPKCLCAVILSSTGRA 236
>gb|BP622455.1|BP622455 BP622455 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-03-E10 3',
mRNA sequence
Length = 372
Score = 107 bits (228), Expect = 3e-022
Identities = 38/59 (64%), Positives = 48/59 (81%)
Frame = -2 / -2
Query: 404 CCSAVHTIGQSPSCLCAVMLSGTARAAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP* 228
CC+ + Q+P CLC ++LS TA+A+G+ PEVA+TIPKRCN A+RPVGYKCG YTLP*
Sbjct: 356 CCTQIKRFSQNPKCLCPILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP* 180
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,121,604,512
Number of Sequences: 1013581
Number of extensions: 17117832
Number of successful extensions: 532200
Number of sequences better than 1.0e-020: 38
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 29915233535
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)