TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A... 110 8e-039
ref|NM_127596.2| Arabidopsis thaliana MUR3 (MURUS 3); catal... 110 8e-039
gb|BT023734.1| Arabidopsis thaliana At2g20370 gene, complet... 110 8e-039
gb|AY195743.1| Arabidopsis thaliana xyloglucan galactosyltr... 110 8e-039
emb|AX507296.1| Sequence 1991 from Patent WO0216655 110 8e-039
emb|AX589885.1| Sequence 67 from Patent WO02081695 110 8e-039
emb|AX651293.1| Sequence 78 from Patent WO03000898 110 8e-039
gb|BX835339.1|BX835339 BX835339 Arabidopsis thaliana Flower... 110 9e-039
gb|BX835192.1|BX835192 BX835192 Arabidopsis thaliana Flower... 99 4e-031
gb|BP585371.1|BP585371 BP585371 RAFL15 Arabidopsis thaliana... 58 2e-023
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 110 5e-023
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete
sequence
Length = 93868
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / -1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 17965 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 17786
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 17785 RKNMIEGRTEYDYFVEEN 17732
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 17746 FVEENSWKYALLEEGQREAGGHVWDPFF 17663
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 17602 ADAAKNSWKSEQR 17564
>ref|NM_127596.2| Arabidopsis thaliana MUR3 (MURUS 3); catalytic AT2G20370 (MUR3) mRNA,
complete cds
Length = 2416
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 1813 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 1992
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 1993 RKNMIEGRTEYDYFVEEN 2046
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 2032 FVEENSWKYALLEEGQREAGGHVWDPFF 2115
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 2176 ADAAKNSWKSEQR 2214
>gb|BT023734.1| Arabidopsis thaliana At2g20370 gene, complete cds
Length = 2069
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +3
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 1620 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 1799
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 1800 RKNMIEGRTEYDYFVEEN 1853
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +3
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 1839 FVEENSWKYALLEEGQREAGGHVWDPFF 1922
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +3
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 1983 ADAAKNSWKSEQR 2021
>gb|AY195743.1| Arabidopsis thaliana xyloglucan galactosyltransferase (MUR3) gene,
complete cds
Length = 1860
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 1444 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 1623
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 1624 RKNMIEGRTEYDYFVEEN 1677
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 1663 FVEENSWKYALLEEGQREAGGHVWDPFF 1746
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 1807 ADAAKNSWKSEQR 1845
>emb|AX507296.1| Sequence 1991 from Patent WO0216655
Length = 1803
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 1387 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 1566
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 1567 RKNMIEGRTEYDYFVEEN 1620
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 1606 FVEENSWKYALLEEGQREAGGHVWDPFF 1689
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 1750 ADAAKNSWKSEQR 1788
>emb|AX589885.1| Sequence 67 from Patent WO02081695
Length = 1803
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 1387 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 1566
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 1567 RKNMIEGRTEYDYFVEEN 1620
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 1606 FVEENSWKYALLEEGQREAGGHVWDPFF 1689
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 1750 ADAAKNSWKSEQR 1788
>emb|AX651293.1| Sequence 78 from Patent WO03000898
Length = 1803
Score = 110 bits (234), Expect(3) = 8e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 1387 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 1566
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 1567 RKNMIEGRTEYDYFVEEN 1620
Score = 58.3 bits (121), Expect(3) = 8e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 1606 FVEENSWKYALLEEGQREAGGHVWDPFF 1689
Score = 32.2 bits (64), Expect(3) = 8e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / +1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 1750 ADAAKNSWKSEQR 1788
>gb|BX835339.1|BX835339 BX835339 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB85ZE07 3PRIM, mRNA sequence
Length = 613
Score = 110 bits (234), Expect(3) = 9e-039
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / -1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 559 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 380
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 379 RKNMIEGRTEYDYFVEEN 326
Score = 58.3 bits (121), Expect(3) = 9e-039
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 340 FVEENSWKYALLEEGQREAGGHVWDPFF 257
Score = 32.2 bits (64), Expect(3) = 9e-039
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 196 ADAAKNSWKSEQR 158
>gb|BX835192.1|BX835192 BX835192 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB31ZG12 3PRIM, mRNA sequence
Length = 1125
Score = 98.7 bits (209), Expect(2) = 4e-031
Identities = 40/66 (60%), Positives = 55/66 (83%)
Frame = -2 / -1
Query: 565 PDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKLRRDIIAGQEDKD 386
P VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+LR+++I G+ + D
Sbjct: 510 PRQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRLRKNMIEGRTEYD 331
Query: 385 FIEENS 368
+ E +
Sbjct: 330 YFVEEN 313
Score = 58.3 bits (121), Expect(2) = 4e-031
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 327 FVEENSWKYALLEEGQREAGGHVWDPFF 244
>gb|BP585371.1|BP585371 BP585371 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-02-E21 3',
mRNA sequence
Length = 446
Score = 58.3 bits (121), Expect(3) = 2e-023
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 385 FIEENSWKYSLLDDGQQAIGPHKWDPFF 302
F+EENSWKY+LL++GQ+ G H WDPFF
Sbjct: 335 FVEENSWKYALLEEGQREAGGHVWDPFF 252
Score = 57.9 bits (120), Expect(3) = 2e-023
Identities = 22/42 (52%), Positives = 35/42 (83%)
Frame = -2 / -1
Query: 493 SKLETLKDAFDVSIEAIINKVTKLRRDIIAGQEDKDFIEENS 368
S+LET KDAFDVS++A+I+KVT+LR+++I G+ + D+ E +
Sbjct: 446 SELETQKDAFDVSVQAVIDKVTRLRKNMIEGRTEYDYFVEEN 321
Score = 32.2 bits (64), Expect(3) = 2e-023
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2 / -1
Query: 259 AEAAKNSWKSEQR 221
A+AAKNSWKSEQR
Sbjct: 191 ADAAKNSWKSEQR 153
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 110 bits (234), Expect = 5e-023
Identities = 47/78 (60%), Positives = 62/78 (79%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I VK MRE VINLIP++IYADPRS+LET KDAFDVS++A+I+KVT+L
Sbjct: 8800879 NISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRL 8801058
Query: 421 RRDIIAGQEDKDFIEENS 368
R+++I G+ + D+ E +
Sbjct: 8801059 RKNMIEGRTEYDYFVEEN 8801112
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,197,081,491
Number of Sequences: 1013581
Number of extensions: 14968493
Number of successful extensions: 150121
Number of sequences better than 1.0e-020: 12
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 36096066910
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)