TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067450.2.1
(724 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX507887.1| Sequence 2582 from Patent WO0216655 98 5e-023
emb|CQ806040.1| Sequence 2451 from Patent WO2004035798 98 5e-023
gb|BT000302.1| Arabidopsis thaliana O-methyltransferase-lik... 98 6e-023
gb|AY099803.1| Arabidopsis thaliana O-methyltransferase-lik... 98 7e-023
ref|NM_119682.3| Arabidopsis thaliana O-methyltransferase/ ... 98 8e-023
>emb|AX507887.1| Sequence 2582 from Patent WO0216655
Length = 1149
Score = 98.2 bits (208), Expect(3) = 5e-023
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
DL HV+ A G+ V GDMF++IP +A+F+KW++HDWGD +C+ ILKNCK+A+PP
Sbjct: 721 DLPHVIEVAEVLDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPP 897
Score = 31.8 bits (63), Expect(3) = 5e-023
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
G ER +EW ++ EAGF+ Y + + V+S+I Y
Sbjct: 1033 GKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 1140
Score = 21.7 bits (41), Expect(3) = 5e-023
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVG 364
GKV+IV++V+G
Sbjct: 904 GKVLIVESVIG 936
>emb|CQ806040.1| Sequence 2451 from Patent WO2004035798
Length = 1149
Score = 98.2 bits (208), Expect(3) = 5e-023
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
DL HV+ A G+ V GDMF++IP +A+F+KW++HDWGD +C+ ILKNCK+A+PP
Sbjct: 721 DLPHVIEVAEVLDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPP 897
Score = 31.8 bits (63), Expect(3) = 5e-023
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
G ER +EW ++ EAGF+ Y + + V+S+I Y
Sbjct: 1033 GKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 1140
Score = 21.7 bits (41), Expect(3) = 5e-023
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVG 364
GKV+IV++V+G
Sbjct: 904 GKVLIVESVIG 936
>gb|BT000302.1| Arabidopsis thaliana O-methyltransferase-like protein (At4g35160)
mRNA, complete cds
Length = 1253
Score = 98.2 bits (208), Expect(3) = 6e-023
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
DL HV+ A G+ V GDMF++IP +A+F+KW++HDWGD +C+ ILKNCK+A+PP
Sbjct: 721 DLPHVIEVAEVLDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPP 897
Score = 31.8 bits (63), Expect(3) = 6e-023
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
G ER +EW ++ EAGF+ Y + + V+S+I Y
Sbjct: 1033 GKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 1140
Score = 21.7 bits (41), Expect(3) = 6e-023
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVG 364
GKV+IV++V+G
Sbjct: 904 GKVLIVESVIG 936
>gb|AY099803.1| Arabidopsis thaliana O-methyltransferase-like protein (At4g35160)
mRNA, complete cds
Length = 1347
Score = 98.2 bits (208), Expect(3) = 7e-023
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
DL HV+ A G+ V GDMF++IP +A+F+KW++HDWGD +C+ ILKNCK+A+PP
Sbjct: 724 DLPHVIEVAEVLDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPP 900
Score = 31.8 bits (63), Expect(3) = 7e-023
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
G ER +EW ++ EAGF+ Y + + V+S+I Y
Sbjct: 1036 GKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 1143
Score = 21.7 bits (41), Expect(3) = 7e-023
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVG 364
GKV+IV++V+G
Sbjct: 907 GKVLIVESVIG 939
>ref|NM_119682.3| Arabidopsis thaliana O-methyltransferase/
S-adenosylmethionine-dependent methyltransferase
AT4G35160 mRNA, complete cds
Length = 1381
Score = 98.2 bits (208), Expect(3) = 8e-023
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
DL HV+ A G+ V GDMF++IP +A+F+KW++HDWGD +C+ ILKNCK+A+PP
Sbjct: 724 DLPHVIEVAEVLDGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPP 900
Score = 31.8 bits (63), Expect(3) = 8e-023
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
G ER +EW ++ EAGF+ Y + + V+S+I Y
Sbjct: 1036 GKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 1143
Score = 21.7 bits (41), Expect(3) = 8e-023
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 396 GKVIIVDTVVG 364
GKV+IV++V+G
Sbjct: 907 GKVLIVESVIG 939
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,529,113,619
Number of Sequences: 1013581
Number of extensions: 22920717
Number of successful extensions: 175360
Number of sequences better than 1.0e-020: 5
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 45304434736
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)