TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE ... 386 e-108
gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response ... 386 e-108
gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5... 386 e-108
gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRN... 392 e-108
gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1... 392 e-108
ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE ... 392 e-108
ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPON... 392 e-108
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 105 1e-095
gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BA... 105 2e-095
dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosom... 108 2e-082
gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveg... 267 5e-070
gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induc... 145 2e-068
ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription ... 145 2e-068
gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At... 145 2e-068
ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 148 3e-068
gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response ... 148 3e-068
gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5... 148 3e-068
gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20... 148 3e-068
emb|AX505548.1| Sequence 243 from Patent WO0216655 148 3e-068
gb|U79557.1|U79557 Arabidopsis thaliana IAA24 (IAA24) mRNA,... 253 7e-066
gb|AF037229.1|AF037229 Arabidopsis thaliana transcription f... 253 7e-066
emb|AX505602.1| Sequence 297 from Patent WO0216655 253 7e-066
gb|BT002050.1| Arabidopsis thaliana transcription factor (A... 253 7e-066
emb|AX651413.1| Sequence 208 from Patent WO03000898 253 7e-066
gb|AF334716.1| Arabidopsis thaliana clone C00027 (h) auxin ... 253 7e-066
gb|BT008805.1| Arabidopsis thaliana At1g19850 gene, complet... 253 7e-066
ref|NM_101840.2| Arabidopsis thaliana MP (MONOPTEROS); tran... 253 7e-066
ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 133 2e-063
ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHI... 133 2e-063
gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) m... 133 6e-063
gb|AC025813.3|AC025813 Arabidopsis thaliana chromosome I cl... 104 3e-060
gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis ... 104 3e-060
gb|AY008390.1| Arabidopsis thaliana ARF11/IAA22 gene, compl... 104 3e-060
gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 87 3e-057
gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, compl... 87 3e-057
gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic... 87 3e-057
gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BA... 84 2e-053
gb|AF037228.1|AF037228 Arabidopsis thaliana transcription f... 84 2e-053
ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 122 7e-051
gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R1... 122 7e-051
ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 122 7e-051
emb|CS165494.1| Sequence 2 from Patent WO2005085453 122 7e-051
ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 122 7e-051
dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding ... 122 7e-051
dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding ... 122 7e-051
dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding ... 122 7e-051
dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding ... 122 7e-051
dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding ... 122 7e-051
dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding ... 122 7e-051
gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10... 122 7e-051
gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5... 122 7e-051
emb|CS165547.1| Sequence 55 from Patent WO2005085453 122 7e-051
emb|CS165497.1| Sequence 5 from Patent WO2005085453 122 7e-051
emb|CS165548.1| Sequence 56 from Patent WO2005085453 122 7e-051
gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA... 122 7e-051
ref|NM_104668.2| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 116 3e-045
gb|AY133723.1| Arabidopsis thaliana auxin response factor 1... 116 3e-045
ref|NM_179499.1| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 116 3e-045
gb|U83245.1|ATU83245 Arabidopsis thaliana auxin response fa... 116 3e-045
ref|NM_001036131.1| Arabidopsis thaliana ARF1 (AUXIN RESPON... 116 3e-045
gb|BT002748.1| Arabidopsis thaliana clone C105458 auxin res... 116 3e-045
emb|AX507306.1| Sequence 2001 from Patent WO0216655 116 3e-045
gb|BU635530.1|BU635530 024G07 Infected Arabidopsis Leaf Ara... 116 3e-045
ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE ... 97 1e-041
gb|AY080832.1| Arabidopsis thaliana auxin response factor A... 97 1e-041
gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response ... 97 1e-041
gb|AY113977.1| Arabidopsis thaliana auxin response factor A... 97 1e-041
gb|AF344313.1| Arabidopsis thaliana auxin response factor 4... 97 1e-041
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 105 2e-041
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 108 6e-041
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 108 7e-041
gb|BU635918.1|BU635918 042G09 Infected Arabidopsis Leaf Ara... 93 2e-039
ref|NM_001036629.1| Arabidopsis thaliana ARF9 (AUXIN RESPON... 97 1e-037
ref|NM_118530.3| Arabidopsis thaliana ARF9 (AUXIN RESPONSE ... 97 1e-037
emb|BX828437.1|CNS0A2BW Arabidopsis thaliana Full-length cD... 97 1e-037
gb|AF082176.1|AF082176 Arabidopsis thaliana auxin response ... 97 1e-037
gb|AF344312.1| Arabidopsis thaliana clone C00029 (e) auxin ... 97 1e-037
gb|BP561257.2|BP561257 BP561257 RAFL6 Arabidopsis thaliana ... 148 2e-036
ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription ... 99 6e-036
gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mR... 99 6e-036
gb|AY059746.1| Arabidopsis thaliana auxin response factor A... 99 6e-036
emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cD... 99 6e-036
gb|AY091392.1| Arabidopsis thaliana putative auxin response... 99 6e-036
gb|AF334717.1| Arabidopsis thaliana auxin response factor A... 99 6e-036
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 86 1e-034
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 86 1e-034
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 86 1e-034
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 86 1e-034
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 86 1e-034
emb|AX506835.1| Sequence 1530 from Patent WO0216655 86 1e-034
emb|AX651787.1| Sequence 640 from Patent WO03000898 86 1e-034
gb|BT015544.1| Arabidopsis thaliana At4g23980 mRNA sequence 70 1e-034
ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 93 3e-034
ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 93 3e-034
ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPO... 93 3e-034
gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At... 93 3e-034
emb|BX815613.1|CNS0ADXB Arabidopsis thaliana Full-length cD... 88 3e-033
emb|BX820997.1|CNS0A8K9 Arabidopsis thaliana Full-length cD... 58 3e-030
emb|CS165493.1| Sequence 1 from Patent WO2005085453 63 3e-030
emb|CS165496.1| Sequence 4 from Patent WO2005085453 63 3e-030
gb|AY669795.1| Arabidopsis thaliana clone C00610 ARF20 (At1... 79 3e-028
ref|NM_103222.2| Arabidopsis thaliana ARF20; transcription ... 79 3e-028
gb|AY669796.1| Arabidopsis thaliana clone C105354 ARF22 (At... 77 4e-028
ref|NM_103162.2| Arabidopsis thaliana ARF22; transcription ... 77 4e-028
ref|NM_103164.2| Arabidopsis thaliana ARF21; transcription ... 74 1e-027
gb|AY669792.1| Arabidopsis thaliana clone C105347 ARF12 (At... 79 5e-027
ref|NM_103153.2| Arabidopsis thaliana ARF12; transcription ... 79 5e-027
ref|NM_103250.1| Arabidopsis thaliana ARF14; transcription ... 72 3e-026
ref|NM_103248.1| Arabidopsis thaliana ARF15; transcription ... 73 3e-026
dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosom... 63 1e-025
gb|AY669793.1| Arabidopsis thaliana clone C105348 (B) ARF13... 70 4e-025
ref|NM_103140.3| Arabidopsis thaliana ARF13; transcription ... 70 4e-025
gb|AY680406.1| Arabidopsis thaliana ARF13 (At1g34170) mRNA,... 70 1e-022
ref|NM_001036062.1| Arabidopsis thaliana ARF13 AT1G34170 (A... 70 1e-022
gb|AF325073.1|AF325073 Arabidopsis thaliana unknown protein... 66 5e-022
gb|AF336919.1| Arabidopsis thaliana clone C00034 (b) auxin ... 66 5e-022
ref|NM_128394.3| Arabidopsis thaliana ARF10; transcription ... 66 5e-022
dbj|AB011483.1| Arabidopsis thaliana genomic DNA, chromosom... 41 2e-021
>ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTOR 8); transcription
factor AT5G37020 (ARF8) mRNA, complete cds
Length = 2840
Score = 386 bits (838), Expect(2) = e-108
Identities = 158/193 (81%), Positives = 173/193 (89%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSV+FI NEKNQL LGIRHATRPQT++PSSVLSSDSMHIGLL
Sbjct: 700 TGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAA 879
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNS FT+F++PRAS +EFVI LSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM
Sbjct: 880 AHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 1059
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT +SD D VRWP+S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPSLFPLR+
Sbjct: 1060 GTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRL 1239
Query: 561 KHPWYSGLAALHD 599
K PW++G ++L D
Sbjct: 1240 KRPWHAGTSSLPD 1278
Score = 272 bits (588), Expect = 1e-071
Identities = 132/198 (66%), Positives = 145/198 (73%)
Frame = -3 / -1
Query: 613 KALLSS*RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ 434
K+ L S + P G + G RDGYIGKVV GSISH+ETLG LSPAVDSSQPTFTD Q
Sbjct: 1292 KSPLPSGKDDVPACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTFTDRQ 1113
Query: 433 *ELGQRTGSASLTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGL 254
*E GQRT S SL VIVPMYLRTLDSSVS ++ RIPT+IRV*KTALMY E ITNS L
Sbjct: 1112 *EFGQRTESRSLIPVIVPMYLRTLDSSVSKSMRKRIPTEIRV*KTALMYLESCITNSDWL 933
Query: 253 ALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNS 74
ALG K VK+L V ARSP+CMLSL++T++G VCGRVA IP KS FFSF M
Sbjct: 932 ALG*KKTVKQLLVAEACAAAARSPICMLSLDKTDDGTIVCGRVA*RIPKKS*FFSFLMKM 753
Query: 73 TESPATSLLALTNTLQPV 20
TESPATS LALT TL PV
Sbjct: 752 TESPATSRLALTKTLHPV 699
Score = 171 bits (368), Expect = 3e-041
Identities = 82/179 (45%), Positives = 109/179 (60%)
Frame = -2 / -3
Query: 557 SQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHFCYCPH 378
S+ ++ WIHRKG Q LN P RN C FIPTNLH SP+ PT+ + IT+ Y H
Sbjct: 1236 SERKKRWIHRKGSQRLNLP*RNPWLSLPCSRFIPTNLHRSPMRVWPTNRI*ITNTSYSTH 1057
Query: 377 VPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXXXXXXX 198
VPADT L+ H ++HPN* RVKN +V K Y+K P + EN E A+
Sbjct: 1056 VPADTRLFCLEEHAKAHPN*NTRVKNGFNVLGKLYHKLRLASPWMKENSETAISCRSMCS 877
Query: 197 XCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKHTPAS 21
KES++HA+TR NR ++SL P +++S+++L+ IP E RISS SL TDK TP+S
Sbjct: 876 SSKESNMHAITR*NR*WYNSLRPSGMTNSQKELILFIPDENDRISSY*SLGTDKDTPSS 700
Score = 123 bits (264), Expect(2) = 3e-036
Identities = 53/127 (41%), Positives = 70/127 (55%)
Frame = +2 / +3
Query: 11 SARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHRTP 190
S +W+EC+CQC T WRFC H E*++ N + + A D + C * HA+ TP
Sbjct: 690 SPNYWMECLCQCQATSSWRFCHFHQE*KESTLFGNSSCHSAADYCTIICFI***HAYWTP 869
Query: 191 CSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCP 370
C +C CN H FL S G +C T F++H FSHA SWDA+ + D ++CP
Sbjct: 870 CCCCTCFCN**LFHCFLSSKG*PI*VCDTTFQVH*SRFSHAYFSWDALSHALRDRRVECP 1049
Query: 371 QVHGDNN 391
QVHG N
Sbjct: 1050 QVHGYYN 1070
Score = 89.0 bits (188), Expect(2) = 3e-024
Identities = 51/120 (42%), Positives = 63/120 (52%)
Frame = +1 / +2
Query: 22 LAGVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTACTSDSXXXX 201
L GV LSV D LEIL +S GM++ + E G RL LF+ V AC DS
Sbjct: 701 LDGVSLSVPSD**LEILSFSSGMKRINSFWEFVMPLGRRLLYHHLFYLVIACILDSLLLL 880
Query: 202 XXXXXXTAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTW 381
A S FS I G +L Y F +T + FFTR +QLGC C R +++VSAGTW
Sbjct: 881 HMLLQLIAVSLFSFIQGLANLSL*YNFPSTLKPFFTRVFQLGCAFACSSRQKSRVSAGTW 1060
Score = 51.0 bits (105), Expect(2) = 3e-036
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +1 / +2
Query: 418 VGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
VG IGD *RLVGMN+ Q + FL G+LS * PFLCIH
Sbjct: 1097 VGQTLIGDL*RLVGMNRLQGRDSQGFLYGRLSL*LPFLCIH 1219
Score = 45.5 bits (93), Expect(2) = 3e-024
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2 / +3
Query: 416 ALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSI 541
+LA L I EGWLG*I+ R + F +G+*A+D LSYVSI
Sbjct: 1095 SLAKLSLAICEGWLG*IDCRGETAKGFFMGD*ASDYLSYVSI 1220
Score = 27.6 bits (54), Expect(2) = e-108
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3 / +1
Query: 660 NFQSPGIGSWGQQRLHPSLLSNDHDQ 737
N+ S G+ W QQRL S + D++Q
Sbjct: 1354 NYPSVGLFPWMQQRLDLSQMGTDNNQ 1431
>gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete
cds
Length = 2817
Score = 386 bits (838), Expect(2) = e-108
Identities = 158/193 (81%), Positives = 173/193 (89%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSV+FI NEKNQL LGIRHATRPQT++PSSVLSSDSMHIGLL
Sbjct: 700 TGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAA 879
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNS FT+F++PRAS +EFVI LSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM
Sbjct: 880 AHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 1059
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT +SD D VRWP+S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPSLFPLR+
Sbjct: 1060 GTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRL 1239
Query: 561 KHPWYSGLAALHD 599
K PW++G ++L D
Sbjct: 1240 KRPWHAGTSSLPD 1278
Score = 272 bits (588), Expect = 1e-071
Identities = 132/198 (66%), Positives = 145/198 (73%)
Frame = -3 / -2
Query: 613 KALLSS*RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ 434
K+ L S + P G + G RDGYIGKVV GSISH+ETLG LSPAVDSSQPTFTD Q
Sbjct: 1292 KSPLPSGKDDVPACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTFTDRQ 1113
Query: 433 *ELGQRTGSASLTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGL 254
*E GQRT S SL VIVPMYLRTLDSSVS ++ RIPT+IRV*KTALMY E ITNS L
Sbjct: 1112 *EFGQRTESRSLIPVIVPMYLRTLDSSVSKSMRKRIPTEIRV*KTALMYLESCITNSDWL 933
Query: 253 ALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNS 74
ALG K VK+L V ARSP+CMLSL++T++G VCGRVA IP KS FFSF M
Sbjct: 932 ALG*KKTVKQLLVAEACAAAARSPICMLSLDKTDDGTIVCGRVA*RIPKKS*FFSFLMKM 753
Query: 73 TESPATSLLALTNTLQPV 20
TESPATS LALT TL PV
Sbjct: 752 TESPATSRLALTKTLHPV 699
Score = 171 bits (368), Expect = 3e-041
Identities = 82/179 (45%), Positives = 109/179 (60%)
Frame = -2 / -1
Query: 557 SQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHFCYCPH 378
S+ ++ WIHRKG Q LN P RN C FIPTNLH SP+ PT+ + IT+ Y H
Sbjct: 1236 SERKKRWIHRKGSQRLNLP*RNPWLSLPCSRFIPTNLHRSPMRVWPTNRI*ITNTSYSTH 1057
Query: 377 VPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXXXXXXX 198
VPADT L+ H ++HPN* RVKN +V K Y+K P + EN E A+
Sbjct: 1056 VPADTRLFCLEEHAKAHPN*NTRVKNGFNVLGKLYHKLRLASPWMKENSETAISCRSMCS 877
Query: 197 XCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKHTPAS 21
KES++HA+TR NR ++SL P +++S+++L+ IP E RISS SL TDK TP+S
Sbjct: 876 SSKESNMHAITR*NR*WYNSLRPSGMTNSQKELILFIPDENDRISSY*SLGTDKDTPSS 700
Score = 123 bits (264), Expect(2) = 3e-036
Identities = 53/127 (41%), Positives = 70/127 (55%)
Frame = +2 / +3
Query: 11 SARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHRTP 190
S +W+EC+CQC T WRFC H E*++ N + + A D + C * HA+ TP
Sbjct: 690 SPNYWMECLCQCQATSSWRFCHFHQE*KESTLFGNSSCHSAADYCTIICFI***HAYWTP 869
Query: 191 CSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCP 370
C +C CN H FL S G +C T F++H FSHA SWDA+ + D ++CP
Sbjct: 870 CCCCTCFCN**LFHCFLSSKG*PI*VCDTTFQVH*SRFSHAYFSWDALSHALRDRRVECP 1049
Query: 371 QVHGDNN 391
QVHG N
Sbjct: 1050 QVHGYYN 1070
Score = 89.0 bits (188), Expect(2) = 3e-024
Identities = 51/120 (42%), Positives = 63/120 (52%)
Frame = +1 / +2
Query: 22 LAGVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTACTSDSXXXX 201
L GV LSV D LEIL +S GM++ + E G RL LF+ V AC DS
Sbjct: 701 LDGVSLSVPSD**LEILSFSSGMKRINSFWEFVMPLGRRLLYHHLFYLVIACILDSLLLL 880
Query: 202 XXXXXXTAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTW 381
A S FS I G +L Y F +T + FFTR +QLGC C R +++VSAGTW
Sbjct: 881 HMLLQLIAVSLFSFIQGLANLSL*YNFPSTLKPFFTRVFQLGCAFACSSRQKSRVSAGTW 1060
Score = 51.0 bits (105), Expect(2) = 3e-036
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +1 / +2
Query: 418 VGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
VG IGD *RLVGMN+ Q + FL G+LS * PFLCIH
Sbjct: 1097 VGQTLIGDL*RLVGMNRLQGRDSQGFLYGRLSL*LPFLCIH 1219
Score = 45.5 bits (93), Expect(2) = 3e-024
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2 / +3
Query: 416 ALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSI 541
+LA L I EGWLG*I+ R + F +G+*A+D LSYVSI
Sbjct: 1095 SLAKLSLAICEGWLG*IDCRGETAKGFFMGD*ASDYLSYVSI 1220
Score = 27.6 bits (54), Expect(2) = e-108
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3 / +1
Query: 660 NFQSPGIGSWGQQRLHPSLLSNDHDQ 737
N+ S G+ W QQRL S + D++Q
Sbjct: 1354 NYPSVGLFPWMQQRLDLSQMGTDNNQ 1431
>gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete
cds
Length = 2467
Score = 386 bits (838), Expect(2) = e-108
Identities = 158/193 (81%), Positives = 173/193 (89%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSV+FI NEKNQL LGIRHATRPQT++PSSVLSSDSMHIGLL
Sbjct: 577 TGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAA 756
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNS FT+F++PRAS +EFVI LSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM
Sbjct: 757 AHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 936
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT +SD D VRWP+S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPSLFPLR+
Sbjct: 937 GTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRL 1116
Query: 561 KHPWYSGLAALHD 599
K PW++G ++L D
Sbjct: 1117 KRPWHAGTSSLPD 1155
Score = 272 bits (588), Expect = 1e-071
Identities = 132/198 (66%), Positives = 145/198 (73%)
Frame = -3 / -3
Query: 613 KALLSS*RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ 434
K+ L S + P G + G RDGYIGKVV GSISH+ETLG LSPAVDSSQPTFTD Q
Sbjct: 1169 KSPLPSGKDDVPACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTFTDRQ 990
Query: 433 *ELGQRTGSASLTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGL 254
*E GQRT S SL VIVPMYLRTLDSSVS ++ RIPT+IRV*KTALMY E ITNS L
Sbjct: 989 *EFGQRTESRSLIPVIVPMYLRTLDSSVSKSMRKRIPTEIRV*KTALMYLESCITNSDWL 810
Query: 253 ALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNS 74
ALG K VK+L V ARSP+CMLSL++T++G VCGRVA IP KS FFSF M
Sbjct: 809 ALG*KKTVKQLLVAEACAAAARSPICMLSLDKTDDGTIVCGRVA*RIPKKS*FFSFLMKM 630
Query: 73 TESPATSLLALTNTLQPV 20
TESPATS LALT TL PV
Sbjct: 629 TESPATSRLALTKTLHPV 576
Score = 171 bits (368), Expect = 3e-041
Identities = 82/179 (45%), Positives = 109/179 (60%)
Frame = -2 / -2
Query: 557 SQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHFCYCPH 378
S+ ++ WIHRKG Q LN P RN C FIPTNLH SP+ PT+ + IT+ Y H
Sbjct: 1113 SERKKRWIHRKGSQRLNLP*RNPWLSLPCSRFIPTNLHRSPMRVWPTNRI*ITNTSYSTH 934
Query: 377 VPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXXXXXXX 198
VPADT L+ H ++HPN* RVKN +V K Y+K P + EN E A+
Sbjct: 933 VPADTRLFCLEEHAKAHPN*NTRVKNGFNVLGKLYHKLRLASPWMKENSETAISCRSMCS 754
Query: 197 XCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKHTPAS 21
KES++HA+TR NR ++SL P +++S+++L+ IP E RISS SL TDK TP+S
Sbjct: 753 SSKESNMHAITR*NR*WYNSLRPSGMTNSQKELILFIPDENDRISSY*SLGTDKDTPSS 577
Score = 123 bits (264), Expect(2) = 3e-036
Identities = 53/127 (41%), Positives = 70/127 (55%)
Frame = +2 / +3
Query: 11 SARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHRTP 190
S +W+EC+CQC T WRFC H E*++ N + + A D + C * HA+ TP
Sbjct: 567 SPNYWMECLCQCQATSSWRFCHFHQE*KESTLFGNSSCHSAADYCTIICFI***HAYWTP 746
Query: 191 CSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCP 370
C +C CN H FL S G +C T F++H FSHA SWDA+ + D ++CP
Sbjct: 747 CCCCTCFCN**LFHCFLSSKG*PI*VCDTTFQVH*SRFSHAYFSWDALSHALRDRRVECP 926
Query: 371 QVHGDNN 391
QVHG N
Sbjct: 927 QVHGYYN 947
Score = 89.0 bits (188), Expect(2) = 3e-024
Identities = 51/120 (42%), Positives = 63/120 (52%)
Frame = +1 / +2
Query: 22 LAGVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTACTSDSXXXX 201
L GV LSV D LEIL +S GM++ + E G RL LF+ V AC DS
Sbjct: 578 LDGVSLSVPSD**LEILSFSSGMKRINSFWEFVMPLGRRLLYHHLFYLVIACILDSLLLL 757
Query: 202 XXXXXXTAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTW 381
A S FS I G +L Y F +T + FFTR +QLGC C R +++VSAGTW
Sbjct: 758 HMLLQLIAVSLFSFIQGLANLSL*YNFPSTLKPFFTRVFQLGCAFACSSRQKSRVSAGTW 937
Score = 51.0 bits (105), Expect(2) = 3e-036
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +1 / +2
Query: 418 VGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
VG IGD *RLVGMN+ Q + FL G+LS * PFLCIH
Sbjct: 974 VGQTLIGDL*RLVGMNRLQGRDSQGFLYGRLSL*LPFLCIH 1096
Score = 45.5 bits (93), Expect(2) = 3e-024
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2 / +3
Query: 416 ALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSI 541
+LA L I EGWLG*I+ R + F +G+*A+D LSYVSI
Sbjct: 972 SLAKLSLAICEGWLG*IDCRGETAKGFFMGD*ASDYLSYVSI 1097
Score = 27.6 bits (54), Expect(2) = e-108
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3 / +1
Query: 660 NFQSPGIGSWGQQRLHPSLLSNDHDQ 737
N+ S G+ W QQRL S + D++Q
Sbjct: 1231 NYPSVGLFPWMQQRLDLSQMGTDNNQ 1308
>gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds
Length = 3832
Score = 392 bits (851), Expect = e-108
Identities = 158/192 (82%), Positives = 170/192 (88%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL
Sbjct: 1332 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAA 1511
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNSRFTIFYNPRASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRRYM
Sbjct: 1512 AHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYM 1691
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT + D DP RW +S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+
Sbjct: 1692 GTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRL 1871
Query: 561 KHPWYSGLAALH 596
K PW GL + H
Sbjct: 1872 KRPWPPGLPSFH 1907
Score = 275 bits (594), Expect = 2e-072
Identities = 130/193 (67%), Positives = 142/193 (73%)
Frame = -3 / -1
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSAS 401
P G L+ G DGYIG VV GSISH ETLG LSPAVDSS PT TD Q EL QR GS S
Sbjct: 1891 PGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGSRS 1712
Query: 400 LTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRL 221
VIVPMY RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLALGL*K+V RL
Sbjct: 1711 QMPVIVPMYRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLALGL*KMVNRL 1532
Query: 220 FVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLAL 41
FV AR P C+LSL++T+EG+TVCGR+A LIP + F SF M TESPATSLLAL
Sbjct: 1531 FVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSFQMKRTESPATSLLAL 1352
Query: 40 TNTLQPVSCRILW 2
TNTLQPV R L+
Sbjct: 1351 TNTLQPVVRRCLF 1313
Score = 177 bits (380), Expect(2) = 2e-045
Identities = 80/189 (42%), Positives = 114/189 (60%)
Frame = +2 / +2
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHR 184
+ S H LE +C+C*+ CCW C+ H+E + +W +T P T+C A C +*Q+A R
Sbjct: 1316 ETSPYHGLERICEC*KACCW*LCSFHLER*ESITSWYKTSQPTTNCHAFICFVK*QYAFR 1495
Query: 185 TPCSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIK 364
C SSSCC KQP+H+ L* G+S R+CYTP + + SH+ + W A+ D +*+* I
Sbjct: 1496 PSCCSSSCCRYKQPIHHLL*PEGESIRVCYTPG*VCESGLSHSRLCWYAV*DAV*N*RI* 1675
Query: 365 CPQVHGDNNRSE*C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIP 544
C VHG NN * +L *F L I +GW+G I RR+ F VG+*A +N+ YVSI
Sbjct: 1676 CSSVHGYNNWHL*SRSYSLG*FALAICQGWVGRIYCRRETAKGFIVGD*AFNNIPYVSIS 1855
Query: 545 VPTAS*ASL 571
+ +* ++
Sbjct: 1856 FSSQA*TAV 1882
Score = 162 bits (349), Expect = 1e-038
Identities = 75/182 (41%), Positives = 103/182 (56%)
Frame = -2 / -3
Query: 572 PRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHF 393
PR + ++ WIHR+ C LN PQ N SC F+P NL SP+ PT + IT+
Sbjct: 1883 PRPFKPERKRRWIHRECC*RLNLPQ*NPWLSLSCSRFVPPNLDRSPMRISPTSRI*ITNA 1704
Query: 392 CYCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXX 213
YC HVP +T F S K HP+ H N V N + +GYNK WT PR+IE+ E+AV
Sbjct: 1703 SYCTHVPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRPRVIEDGESAVCS 1524
Query: 212 XXXXXXCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKH 33
K++ +H VT +NR H SLW S +K+ L+ ++P E +R++SNK ST K+
Sbjct: 1523 GSMSCCSKKA*MHTVT*QNR*RHDSLWSVGSSYTKK*LILIVPDEKNRVTSNKPFSTHKY 1344
Query: 32 TP 27
P
Sbjct: 1343 AP 1338
Score = 94.5 bits (200), Expect(2) = 5e-023
Identities = 51/107 (47%), Positives = 62/107 (57%)
Frame = +1 / +1
Query: 220 TAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTWGQ*QK* 399
TA S SI G+V Q+LLYP+ + + F T L C GC L+L+N V GTW Q*
Sbjct: 1531 TADSPSSITRGRVHQSLLYPWLSM*KRFITLASLLVCGLGCCLKLKNLVFVGTWVQ*LAF 1710
Query: 400 VMLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
V+ VGL+ IGD RL G N QE+ F CG+LS *Q LCIH
Sbjct: 1711 VI*ILLVGLIRIGDLSRLGGTNLLQERDSQGFHCGRLSL*QHSLCIH 1851
Score = 35.9 bits (72), Expect(2) = 5e-023
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1 / +1
Query: 28 GVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTAC 177
G L VL+ LLL L +S G + ++ L D H+L C LF +VT C
Sbjct: 1339 GAYL*VLKGLLLVTLFFSSGTIRINYFLV*DEPTDHKLSCLHLFCQVTVC 1488
Score = 29.0 bits (57), Expect(2) = 2e-045
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3 / +3
Query: 567 PWYSGLAALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPS 713
P L +D + + + G S NFQ G+ W Q RL S
Sbjct: 1887 PGLPSFHGLKEDDMGMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTS 2033
>gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete
cds
Length = 2839
Score = 392 bits (851), Expect = e-108
Identities = 158/192 (82%), Positives = 170/192 (88%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL
Sbjct: 586 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAA 765
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNSRFTIFYNPRASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRRYM
Sbjct: 766 AHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYM 945
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT + D DP RW +S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+
Sbjct: 946 GTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRL 1125
Query: 561 KHPWYSGLAALH 596
K PW GL + H
Sbjct: 1126 KRPWPPGLPSFH 1161
Score = 275 bits (594), Expect = 2e-072
Identities = 130/193 (67%), Positives = 142/193 (73%)
Frame = -3 / -3
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSAS 401
P G L+ G DGYIG VV GSISH ETLG LSPAVDSS PT TD Q EL QR GS S
Sbjct: 1145 PGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGSRS 966
Query: 400 LTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRL 221
VIVPMY RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLALGL*K+V RL
Sbjct: 965 QMPVIVPMYRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLALGL*KMVNRL 786
Query: 220 FVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLAL 41
FV AR P C+LSL++T+EG+TVCGR+A LIP + F SF M TESPATSLLAL
Sbjct: 785 FVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSFQMKRTESPATSLLAL 606
Query: 40 TNTLQPVSCRILW 2
TNTLQPV R L+
Sbjct: 605 TNTLQPVVRRCLF 567
Score = 177 bits (380), Expect(2) = 2e-045
Identities = 80/189 (42%), Positives = 114/189 (60%)
Frame = +2 / +3
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHR 184
+ S H LE +C+C*+ CCW C+ H+E + +W +T P T+C A C +*Q+A R
Sbjct: 570 ETSPYHGLERICEC*KACCW*LCSFHLER*ESITSWYKTSQPTTNCHAFICFVK*QYAFR 749
Query: 185 TPCSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIK 364
C SSSCC KQP+H+ L* G+S R+CYTP + + SH+ + W A+ D +*+* I
Sbjct: 750 PSCCSSSCCRYKQPIHHLL*PEGESIRVCYTPG*VCESGLSHSRLCWYAV*DAV*N*RI* 929
Query: 365 CPQVHGDNNRSE*C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIP 544
C VHG NN * +L *F L I +GW+G I RR+ F VG+*A +N+ YVSI
Sbjct: 930 CSSVHGYNNWHL*SRSYSLG*FALAICQGWVGRIYCRRETAKGFIVGD*AFNNIPYVSIS 1109
Query: 545 VPTAS*ASL 571
+ +* ++
Sbjct: 1110 FSSQA*TAV 1136
Score = 162 bits (349), Expect = 1e-038
Identities = 75/182 (41%), Positives = 103/182 (56%)
Frame = -2 / -2
Query: 572 PRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHF 393
PR + ++ WIHR+ C LN PQ N SC F+P NL SP+ PT + IT+
Sbjct: 1137 PRPFKPERKRRWIHRECC*RLNLPQ*NPWLSLSCSRFVPPNLDRSPMRISPTSRI*ITNA 958
Query: 392 CYCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXX 213
YC HVP +T F S K HP+ H N V N + +GYNK WT PR+IE+ E+AV
Sbjct: 957 SYCTHVPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRPRVIEDGESAVCS 778
Query: 212 XXXXXXCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKH 33
K++ +H VT +NR H SLW S +K+ L+ ++P E +R++SNK ST K+
Sbjct: 777 GSMSCCSKKA*MHTVT*QNR*RHDSLWSVGSSYTKK*LILIVPDEKNRVTSNKPFSTHKY 598
Query: 32 TP 27
P
Sbjct: 597 AP 592
Score = 94.5 bits (200), Expect(2) = 5e-023
Identities = 51/107 (47%), Positives = 62/107 (57%)
Frame = +1 / +2
Query: 220 TAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTWGQ*QK* 399
TA S SI G+V Q+LLYP+ + + F T L C GC L+L+N V GTW Q*
Sbjct: 785 TADSPSSITRGRVHQSLLYPWLSM*KRFITLASLLVCGLGCCLKLKNLVFVGTWVQ*LAF 964
Query: 400 VMLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
V+ VGL+ IGD RL G N QE+ F CG+LS *Q LCIH
Sbjct: 965 VI*ILLVGLIRIGDLSRLGGTNLLQERDSQGFHCGRLSL*QHSLCIH 1105
Score = 35.9 bits (72), Expect(2) = 5e-023
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1 / +2
Query: 28 GVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTAC 177
G L VL+ LLL L +S G + ++ L D H+L C LF +VT C
Sbjct: 593 GAYL*VLKGLLLVTLFFSSGTIRINYFLV*DEPTDHKLSCLHLFCQVTVC 742
Score = 29.0 bits (57), Expect(2) = 2e-045
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3 / +1
Query: 567 PWYSGLAALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPS 713
P L +D + + + G S NFQ G+ W Q RL S
Sbjct: 1141 PGLPSFHGLKEDDMGMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTS 1287
>ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6); transcription
factor AT1G30330 (ARF6) transcript variant AT1G30330.1
mRNA, complete cds
Length = 3868
Score = 392 bits (851), Expect = e-108
Identities = 158/192 (82%), Positives = 170/192 (88%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL
Sbjct: 1343 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAA 1522
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNSRFTIFYNPRASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRRYM
Sbjct: 1523 AHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYM 1702
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT + D DP RW +S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+
Sbjct: 1703 GTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRL 1882
Query: 561 KHPWYSGLAALH 596
K PW GL + H
Sbjct: 1883 KRPWPPGLPSFH 1918
Score = 275 bits (594), Expect = 2e-072
Identities = 130/193 (67%), Positives = 142/193 (73%)
Frame = -3 / -2
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSAS 401
P G L+ G DGYIG VV GSISH ETLG LSPAVDSS PT TD Q EL QR GS S
Sbjct: 1902 PGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGSRS 1723
Query: 400 LTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRL 221
VIVPMY RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLALGL*K+V RL
Sbjct: 1722 QMPVIVPMYRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLALGL*KMVNRL 1543
Query: 220 FVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLAL 41
FV AR P C+LSL++T+EG+TVCGR+A LIP + F SF M TESPATSLLAL
Sbjct: 1542 FVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSFQMKRTESPATSLLAL 1363
Query: 40 TNTLQPVSCRILW 2
TNTLQPV R L+
Sbjct: 1362 TNTLQPVVRRCLF 1324
Score = 177 bits (380), Expect(2) = 2e-045
Identities = 80/189 (42%), Positives = 114/189 (60%)
Frame = +2 / +1
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHR 184
+ S H LE +C+C*+ CCW C+ H+E + +W +T P T+C A C +*Q+A R
Sbjct: 1327 ETSPYHGLERICEC*KACCW*LCSFHLER*ESITSWYKTSQPTTNCHAFICFVK*QYAFR 1506
Query: 185 TPCSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIK 364
C SSSCC KQP+H+ L* G+S R+CYTP + + SH+ + W A+ D +*+* I
Sbjct: 1507 PSCCSSSCCRYKQPIHHLL*PEGESIRVCYTPG*VCESGLSHSRLCWYAV*DAV*N*RI* 1686
Query: 365 CPQVHGDNNRSE*C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIP 544
C VHG NN * +L *F L I +GW+G I RR+ F VG+*A +N+ YVSI
Sbjct: 1687 CSSVHGYNNWHL*SRSYSLG*FALAICQGWVGRIYCRRETAKGFIVGD*AFNNIPYVSIS 1866
Query: 545 VPTAS*ASL 571
+ +* ++
Sbjct: 1867 FSSQA*TAV 1893
Score = 162 bits (349), Expect = 1e-038
Identities = 75/182 (41%), Positives = 103/182 (56%)
Frame = -2 / -1
Query: 572 PRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHF 393
PR + ++ WIHR+ C LN PQ N SC F+P NL SP+ PT + IT+
Sbjct: 1894 PRPFKPERKRRWIHRECC*RLNLPQ*NPWLSLSCSRFVPPNLDRSPMRISPTSRI*ITNA 1715
Query: 392 CYCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXX 213
YC HVP +T F S K HP+ H N V N + +GYNK WT PR+IE+ E+AV
Sbjct: 1714 SYCTHVPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRPRVIEDGESAVCS 1535
Query: 212 XXXXXXCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKH 33
K++ +H VT +NR H SLW S +K+ L+ ++P E +R++SNK ST K+
Sbjct: 1534 GSMSCCSKKA*MHTVT*QNR*RHDSLWSVGSSYTKK*LILIVPDEKNRVTSNKPFSTHKY 1355
Query: 32 TP 27
P
Sbjct: 1354 AP 1349
Score = 94.5 bits (200), Expect(2) = 5e-023
Identities = 51/107 (47%), Positives = 62/107 (57%)
Frame = +1 / +3
Query: 220 TAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTWGQ*QK* 399
TA S SI G+V Q+LLYP+ + + F T L C GC L+L+N V GTW Q*
Sbjct: 1542 TADSPSSITRGRVHQSLLYPWLSM*KRFITLASLLVCGLGCCLKLKNLVFVGTWVQ*LAF 1721
Query: 400 VMLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
V+ VGL+ IGD RL G N QE+ F CG+LS *Q LCIH
Sbjct: 1722 VI*ILLVGLIRIGDLSRLGGTNLLQERDSQGFHCGRLSL*QHSLCIH 1862
Score = 35.9 bits (72), Expect(2) = 5e-023
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1 / +3
Query: 28 GVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTAC 177
G L VL+ LLL L +S G + ++ L D H+L C LF +VT C
Sbjct: 1350 GAYL*VLKGLLLVTLFFSSGTIRINYFLV*DEPTDHKLSCLHLFCQVTVC 1499
Score = 29.0 bits (57), Expect(2) = 2e-045
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3 / +2
Query: 567 PWYSGLAALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPS 713
P L +D + + + G S NFQ G+ W Q RL S
Sbjct: 1898 PGLPSFHGLKEDDMGMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTS 2044
>ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6) AT1G30330 (ARF6)
transcript variant AT1G30330.2 mRNA, complete cds
Length = 3111
Score = 392 bits (851), Expect = e-108
Identities = 158/192 (82%), Positives = 170/192 (88%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL
Sbjct: 586 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAA 765
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNSRFTIFYNPRASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRRYM
Sbjct: 766 AHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYM 945
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRV 560
GTIT + D DP RW +S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+
Sbjct: 946 GTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRL 1125
Query: 561 KHPWYSGLAALH 596
K PW GL + H
Sbjct: 1126 KRPWPPGLPSFH 1161
Score = 275 bits (594), Expect = 2e-072
Identities = 130/193 (67%), Positives = 142/193 (73%)
Frame = -3 / -2
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSAS 401
P G L+ G DGYIG VV GSISH ETLG LSPAVDSS PT TD Q EL QR GS S
Sbjct: 1145 PGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPTLTDRQCELAQRVGSRS 966
Query: 400 LTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRL 221
VIVPMY RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLALGL*K+V RL
Sbjct: 965 QMPVIVPMYRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLALGL*KMVNRL 786
Query: 220 FVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLAL 41
FV AR P C+LSL++T+EG+TVCGR+A LIP + F SF M TESPATSLLAL
Sbjct: 785 FVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSFQMKRTESPATSLLAL 606
Query: 40 TNTLQPVSCRILW 2
TNTLQPV R L+
Sbjct: 605 TNTLQPVVRRCLF 567
Score = 177 bits (380), Expect(2) = 2e-045
Identities = 80/189 (42%), Positives = 114/189 (60%)
Frame = +2 / +3
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHR 184
+ S H LE +C+C*+ CCW C+ H+E + +W +T P T+C A C +*Q+A R
Sbjct: 570 ETSPYHGLERICEC*KACCW*LCSFHLER*ESITSWYKTSQPTTNCHAFICFVK*QYAFR 749
Query: 185 TPCSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIK 364
C SSSCC KQP+H+ L* G+S R+CYTP + + SH+ + W A+ D +*+* I
Sbjct: 750 PSCCSSSCCRYKQPIHHLL*PEGESIRVCYTPG*VCESGLSHSRLCWYAV*DAV*N*RI* 929
Query: 365 CPQVHGDNNRSE*C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIP 544
C VHG NN * +L *F L I +GW+G I RR+ F VG+*A +N+ YVSI
Sbjct: 930 CSSVHGYNNWHL*SRSYSLG*FALAICQGWVGRIYCRRETAKGFIVGD*AFNNIPYVSIS 1109
Query: 545 VPTAS*ASL 571
+ +* ++
Sbjct: 1110 FSSQA*TAV 1136
Score = 162 bits (349), Expect = 1e-038
Identities = 75/182 (41%), Positives = 103/182 (56%)
Frame = -2 / -1
Query: 572 PRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHF 393
PR + ++ WIHR+ C LN PQ N SC F+P NL SP+ PT + IT+
Sbjct: 1137 PRPFKPERKRRWIHRECC*RLNLPQ*NPWLSLSCSRFVPPNLDRSPMRISPTSRI*ITNA 958
Query: 392 CYCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXX 213
YC HVP +T F S K HP+ H N V N + +GYNK WT PR+IE+ E+AV
Sbjct: 957 SYCTHVPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRPRVIEDGESAVCS 778
Query: 212 XXXXXXCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDKH 33
K++ +H VT +NR H SLW S +K+ L+ ++P E +R++SNK ST K+
Sbjct: 777 GSMSCCSKKA*MHTVT*QNR*RHDSLWSVGSSYTKK*LILIVPDEKNRVTSNKPFSTHKY 598
Query: 32 TP 27
P
Sbjct: 597 AP 592
Score = 94.5 bits (200), Expect(2) = 5e-023
Identities = 51/107 (47%), Positives = 62/107 (57%)
Frame = +1 / +2
Query: 220 TAASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTWGQ*QK* 399
TA S SI G+V Q+LLYP+ + + F T L C GC L+L+N V GTW Q*
Sbjct: 785 TADSPSSITRGRVHQSLLYPWLSM*KRFITLASLLVCGLGCCLKLKNLVFVGTWVQ*LAF 964
Query: 400 VMLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
V+ VGL+ IGD RL G N QE+ F CG+LS *Q LCIH
Sbjct: 965 VI*ILLVGLIRIGDLSRLGGTNLLQERDSQGFHCGRLSL*QHSLCIH 1105
Score = 35.9 bits (72), Expect(2) = 5e-023
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1 / +2
Query: 28 GVCLSVLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTAC 177
G L VL+ LLL L +S G + ++ L D H+L C LF +VT C
Sbjct: 593 GAYL*VLKGLLLVTLFFSSGTIRINYFLV*DEPTDHKLSCLHLFCQVTVC 742
Score = 29.0 bits (57), Expect(2) = 2e-045
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3 / +1
Query: 567 PWYSGLAALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPS 713
P L +D + + + G S NFQ G+ W Q RL S
Sbjct: 1141 PGLPSFHGLKEDDMGMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTS 1287
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 105 bits (225), Expect(6) = 1e-095
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +3 / -3
Query: 444 VKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALH 596
++VGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+K PW GL + H
Sbjct: 10696951 MQVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFH 10696799
Score = 104 bits (221), Expect(4) = 3e-060
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3 / -3
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTE 266
+EK+QL+LGIR A R + SSV+SSDSMHIG+L +S FTIF+NPRASP+E
Sbjct: 6631162 DEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSE 6630983
Query: 267 FVIPLSKYIKAVF 305
FV+PL+KY KA++
Sbjct: 6630982 FVVPLAKYNKALY 6630944
Score = 104 bits (221), Expect(6) = 1e-095
Identities = 43/55 (78%), Positives = 45/55 (81%)
Frame = +3 / -2
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
N+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL TNSRFTIFYNPR
Sbjct: 10697561 NDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPR 10697397
Score = 92.7 bits (196), Expect(6) = 1e-095
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +3 / -2
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRR
Sbjct: 10697318 RASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRR 10697193
Score = 85.4 bits (180), Expect(4) = 3e-060
Identities = 30/49 (61%), Positives = 41/49 (83%)
Frame = +3 / -3
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++V
Sbjct: 6630946 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 6630800
Score = 83.5 bits (176), Expect(4) = 2e-053
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +3 / +1
Query: 351 TEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFP 530
T V RYMGTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE +
Sbjct: 6889024 TRFGCVFRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLF 6889203
Query: 531 MYPSL 545
++PSL
Sbjct: 6889204 IFPSL 6889218
Score = 77.1 bits (162), Expect(4) = 2e-053
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +3 / +2
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+EK+QL++G+R A R QT +PSSVLS+DSMHIG+L + F IFYNPR
Sbjct: 6888593 DEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 6888757
Score = 73.0 bits (153), Expect(5) = 3e-057
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = -3 / +1
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSF 86
LGL*K+V RLFV AR P C+LSL++T+EG+TVCGR+A LIP + F SF
Sbjct: 10697398 LGL*KMVNRLFVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSF 10697562
Score = 71.2 bits (149), Expect(5) = 3e-057
Identities = 33/43 (76%), Positives = 35/43 (81%)
Frame = -3 / +1
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
Y RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLAL
Sbjct: 10697191 YRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLAL 10697319
Score = 67.0 bits (140), Expect(5) = 3e-057
Identities = 30/44 (68%), Positives = 31/44 (70%)
Frame = -3 / +3
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPT 449
P G L+ G DGYIG VV GSISH ETLG LSPAVDSS PT
Sbjct: 10696815 PGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPT 10696946
Score = 65.7 bits (137), Expect(4) = 2e-053
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3 / +3
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RR
Sbjct: 6888837 RACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRR 6888962
Score = 60.6 bits (126), Expect(3) = 1e-022
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +2 / -1
Query: 107 AWNQTRYPATDCDALFCSFE*QHAHRTPCSSSSCCCNKQPLHNFL* 244
+W +T P T+C A C +*Q+A R C SSSCC KQP+H+ L*
Sbjct: 10697541 SWYKTSQPTTNCHAFICFVK*QYAFRPSCCSSSCCRYKQPIHHLL* 10697404
Score = 60.2 bits (125), Expect(4) = 6e-030
Identities = 33/70 (47%), Positives = 41/70 (58%)
Frame = -3 / +3
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 6630951 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 6631130
Query: 118 LIPSKSWFFS 89
LIP+ S FS
Sbjct: 6631131 LIPNISCDFS 6631160
Score = 57.0 bits (118), Expect(6) = 1e-095
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3 / -1
Query: 354 EESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
E S V RYMGTIT + D DP RW +S+WRSVKV
Sbjct: 10697133 ESSFVVRYMGTITGICDLDPTRWANSHWRSVKV 10697035
Score = 56.5 bits (117), Expect(4) = 3e-060
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3 / -2
Query: 447 KVGWDESTAGERPPRVSLWEIEPLTT 524
+VGWDESTAG+RP RVS+WEIEP+ T
Sbjct: 6630728 QVGWDESTAGDRPSRVSIWEIEPVIT 6630651
Score = 56.5 bits (117), Expect(6) = 1e-095
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +3 / -3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNE 92
TGWSVFVSAKRLVAGDSVLFIW E
Sbjct: 10697710 TGWSVFVSAKRLVAGDSVLFIWLE 10697639
Score = 53.3 bits (110), Expect(3) = 6e-021
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = -3 / -1
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFS 89
LGL* I K + + AR+PMC+LS ERT+EG VC R+A L P+ S FS
Sbjct: 6888756 LGL*NIKKGVRLAVA*AAAARTPMCILSAERTDEGSAVCWRLARLTPTISCDFS 6888595
Score = 46.9 bits (96), Expect(4) = 3e-023
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2 / +3
Query: 380 HVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCP 249
H+P +T F S K HP+ H N V N + +GYNK WT P
Sbjct: 10697187 HLPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRP 10697318
Score = 46.4 bits (95), Expect(5) = 3e-057
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = -3 / +3
Query: 91 SFHMNSTESPATSLLALTNTLQPVSCRILW 2
S M TESPATSLLALTNTLQPV R L+
Sbjct: 10697640 SNQMKRTESPATSLLALTNTLQPVVRRCLF 10697729
Score = 46.4 bits (95), Expect(4) = 3e-023
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2 / +2
Query: 572 PRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH 444
PR + ++ WIHR+ C LN PQ N SC F+P NLH
Sbjct: 10696823 PRPFKPERKRRWIHRECC*RLNLPQ*NPWLSLSCSRFVPPNLH 10696951
Score = 46.4 bits (95), Expect(3) = 6e-021
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -3 / -3
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
YLR +SSVSN I N IPT+ AL Y RGITNS G AL
Sbjct: 6888964 YLRFPESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQAL 6888836
Score = 46.0 bits (94), Expect(4) = 3e-060
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / -2
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLF+
Sbjct: 6631304 TGWSVFVSTKRLFAGDSVLFV 6631242
Score = 46.0 bits (94), Expect(4) = 6e-030
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -3 / +3
Query: 415 TGSASLTSVIVPMYLRTLDSSVSNNILNRIPTD 317
TGS SL V VP+YLRT SSVSN I N IP D
Sbjct: 6630837 TGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRD 6630935
Score = 44.1 bits (90), Expect(3) = 1e-022
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1 / -3
Query: 223 AASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAG 375
A++ F G+V Q+LLYP+ + + F T L C GC L+L+N V G
Sbjct: 10697344 ASNGFGFSAGRVHQSLLYPWLSM*KRFITLASLLVCGLGCCLKLKNLVFVG 10697192
Score = 42.8 bits (87), Expect(4) = 2e-053
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWS+FV +KRL AGDSVLFI
Sbjct: 6888431 TGWSLFVGSKRLRAGDSVLFI 6888493
Score = 42.8 bits (87), Expect(4) = 6e-030
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3 / +1
Query: 523 VVSGSISHRETLGGLSPAVDSSQPT 449
V++GSISH +T GLSPAVDSS PT
Sbjct: 6630652 VMTGSISHMDTRLGLSPAVDSSHPT 6630726
Score = 41.8 bits (85), Expect(5) = 3e-057
Identities = 20/33 (60%), Positives = 21/33 (63%)
Frame = -3 / +2
Query: 451 TFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSS 353
T TD Q EL QR GS S VIVPMYL T + S
Sbjct: 10697036 TLTDRQCELAQRVGSRSQMPVIVPMYLTTNEDS 10697134
Score = 41.4 bits (84), Expect(4) = 3e-023
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = -1 / +2
Query: 243 YRKL*SGCLLQQHELLLQGVRCACCHSKEQKRASQSVAG*RV*FQ 109
YR+ * GCL +QHELL Q A CH +Q +A Q V G V +Q
Sbjct: 10697405 YRRW*IGCL*RQHELLQQEGLNAYCHLTKQMKA*QFVVGWLVLYQ 10697539
Score = 41.4 bits (84), Expect(3) = 1e-022
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / -2
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHM 85
+ S H LE +C+C*+ CCW C+ H+
Sbjct: 10697726 ETSPYHGLERICEC*KACCW*LCSFHL 10697646
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 26/60 (43%), Positives = 30/60 (50%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYL T
Sbjct: 6889217 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLNT 6889038
Score = 39.6 bits (80), Expect(4) = 6e-030
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3 / +1
Query: 103 SWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
S + S+ N TESPA SL LT TLQPV + L+
Sbjct: 6631222 SKYDSYLTNKTESPANSLFVLTKTLQPVVSKCLF 6631323
Score = 30.9 bits (61), Expect(4) = 3e-023
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 452 NLH*SPIGTRPTHWVSITHFCYCPHVP 372
NL SP+ PT + IT+ YC HVP
Sbjct: 10697035 NLDRSPMRISPTSRI*ITNASYCTHVP 10697115
Score = 30.9 bits (61), Expect(6) = 1e-095
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3 / -3
Query: 582 LAALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPS 713
+A L +D + + + G S NFQ G+ W Q RL S
Sbjct: 10696723 VAGLKEDDMGMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTS 10696592
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete
sequence
Length = 82281
Score = 105 bits (225), Expect(6) = 2e-095
Identities = 40/51 (78%), Positives = 44/51 (86%)
Frame = +3 / +1
Query: 444 VKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALH 596
++VGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+K PW GL + H
Sbjct: 68716 MQVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFH 68868
Score = 104 bits (221), Expect(6) = 2e-095
Identities = 43/55 (78%), Positives = 45/55 (81%)
Frame = +3 / +3
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
N+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL TNSRFTIFYNPR
Sbjct: 68106 NDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPR 68270
Score = 92.7 bits (196), Expect(6) = 2e-095
Identities = 37/42 (88%), Positives = 42/42 (100%)
Frame = +3 / +3
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRR
Sbjct: 68349 RASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRR 68474
Score = 73.0 bits (153), Expect(5) = 3e-057
Identities = 32/55 (58%), Positives = 40/55 (72%)
Frame = -3 / -3
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSF 86
LGL*K+V RLFV AR P C+LSL++T+EG+TVCGR+A LIP + F SF
Sbjct: 68269 LGL*KMVNRLFVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSF 68105
Score = 71.2 bits (149), Expect(5) = 3e-057
Identities = 33/43 (76%), Positives = 35/43 (81%)
Frame = -3 / -3
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
Y RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLAL
Sbjct: 68476 YRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLAL 68348
Score = 67.0 bits (140), Expect(5) = 3e-057
Identities = 30/44 (68%), Positives = 31/44 (70%)
Frame = -3 / -2
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPT 449
P G L+ G DGYIG VV GSISH ETLG LSPAVDSS PT
Sbjct: 68852 PGGHGRLSLRGKGDGYIGNVVKGSISHNETLGCLSPAVDSSHPT 68721
Score = 60.6 bits (126), Expect(5) = 3e-030
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +2 / +2
Query: 107 AWNQTRYPATDCDALFCSFE*QHAHRTPCSSSSCCCNKQPLHNFL* 244
+W +T P T+C A C +*Q+A R C SSSCC KQP+H+ L*
Sbjct: 68126 SWYKTSQPTTNCHAFICFVK*QYAFRPSCCSSSCCRYKQPIHHLL* 68263
Score = 57.0 bits (118), Expect(6) = 2e-095
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3 / +2
Query: 354 EESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
E S V RYMGTIT + D DP RW +S+WRSVKV
Sbjct: 68534 ESSFVVRYMGTITGICDLDPTRWANSHWRSVKV 68632
Score = 56.5 bits (117), Expect(6) = 2e-095
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNE 92
TGWSVFVSAKRLVAGDSVLFIW E
Sbjct: 67957 TGWSVFVSAKRLVAGDSVLFIWLE 68028
Score = 46.9 bits (96), Expect(4) = 3e-023
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2 / -2
Query: 380 HVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCP 249
H+P +T F S K HP+ H N V N + +GYNK WT P
Sbjct: 68480 HLPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRP 68349
Score = 46.4 bits (95), Expect(5) = 3e-057
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = -3 / -2
Query: 91 SFHMNSTESPATSLLALTNTLQPVSCRILW 2
S M TESPATSLLALTNTLQPV R L+
Sbjct: 68027 SNQMKRTESPATSLLALTNTLQPVVRRCLF 67938
Score = 46.4 bits (95), Expect(4) = 3e-023
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2 / -1
Query: 572 PRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH 444
PR + ++ WIHR+ C LN PQ N SC F+P NLH
Sbjct: 68844 PRPFKPERKRRWIHRECC*RLNLPQ*NPWLSLSCSRFVPPNLH 68716
Score = 44.1 bits (90), Expect(5) = 3e-030
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1 / +1
Query: 223 AASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAG 375
A++ F G+V Q+LLYP+ + + F T L C GC L+L+N V G
Sbjct: 68323 ASNGFGFSAGRVHQSLLYPWLSM*KRFITLASLLVCGLGCCLKLKNLVFVG 68475
Score = 41.8 bits (85), Expect(5) = 3e-057
Identities = 20/33 (60%), Positives = 21/33 (63%)
Frame = -3 / -1
Query: 451 TFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSS 353
T TD Q EL QR GS S VIVPMYL T + S
Sbjct: 68631 TLTDRQCELAQRVGSRSQMPVIVPMYLTTNEDS 68533
Score = 41.4 bits (84), Expect(5) = 3e-030
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHM 85
+ S H LE +C+C*+ CCW C+ H+
Sbjct: 67941 ETSPYHGLERICEC*KACCW*LCSFHL 68021
Score = 41.4 bits (84), Expect(4) = 3e-023
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = -1 / -1
Query: 243 YRKL*SGCLLQQHELLLQGVRCACCHSKEQKRASQSVAG*RV*FQ 109
YR+ * GCL +QHELL Q A CH +Q +A Q V G V +Q
Sbjct: 68262 YRRW*IGCL*RQHELLQQEGLNAYCHLTKQMKA*QFVVGWLVLYQ 68128
Score = 35.9 bits (72), Expect(5) = 3e-030
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2 / +3
Query: 449 GWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASL 571
GW+G I RR+ F VG+*A +N+ YVSI + +* ++
Sbjct: 68721 GWVGRIYCRRETAKGFIVGD*AFNNIPYVSISFSSQA*TAV 68843
Score = 30.9 bits (61), Expect(6) = 2e-095
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3 / +1
Query: 582 LAALHDDSNALMWLRGVTGEGGFHSSNFQSPGIGSWGQQRLHPS 713
+A L +D + + + G S NFQ G+ W Q RL S
Sbjct: 68944 VAGLKEDDMGMSMSSPLMWDRGLQSLNFQGMGVNPWMQPRLDTS 69075
Score = 30.9 bits (61), Expect(4) = 3e-023
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -3
Query: 452 NLH*SPIGTRPTHWVSITHFCYCPHVP 372
NL SP+ PT + IT+ YC HVP
Sbjct: 68632 NLDRSPMRISPTSRI*ITNASYCTHVP 68552
Score = 24.4 bits (47), Expect(5) = 3e-030
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 370 AGTWGQ*QK*VMLTQCVGLVPIGD 441
+GTW Q* V+ VGL+ IGD
Sbjct: 68550 SGTWVQ*LAFVI*ILLVGLIRIGD 68621
>dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15O15
Length = 23026
Score = 108 bits (230), Expect(6) = 2e-082
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +3 / +2
Query: 450 VGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAAL 593
VGWDESTAGER PRVSLWEIEPLTTFPMYPSLFPLR+K PW++G ++L
Sbjct: 17156 VGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHAGTSSL 17299
Score = 100 bits (212), Expect(6) = 2e-082
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = +3 / +2
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
NEKNQL LGIRHATRPQT++PSSVLSSDSMHIGLL TNS FT+F++PR
Sbjct: 16469 NEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPR 16633
Score = 89.5 bits (189), Expect(6) = 2e-082
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3 / +2
Query: 234 IFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
I + RAS +EFVI LSKYIKAVFHTRISVGMRFRMLFETEESSVRR
Sbjct: 16700 ILFMFRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 16840
Score = 78.5 bits (165), Expect(5) = 6e-057
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = -3 / -2
Query: 580 PEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTD 440
P G + G RDGYIGKVV GSISH+ETLG LSPAVDSSQPT+T+
Sbjct: 17286 PACHGRFSLRGKRDGYIGKVVRGSISHKETLGCLSPAVDSSQPTYTN 17146
Score = 69.3 bits (145), Expect(5) = 6e-057
Identities = 32/55 (58%), Positives = 38/55 (69%)
Frame = -3 / -2
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSF 86
LG K VK+L V ARSP+CMLSL++T++G VCGRVA IP KS FFSF
Sbjct: 16632 LG*KKTVKQLLVAEACAAAARSPICMLSLDKTDDGTIVCGRVA*RIPKKS*FFSF 16468
Score = 67.5 bits (141), Expect(5) = 6e-057
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = -3 / -2
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIV 230
+LRTLDSSVS ++ RIPT+IRV*KTALMY E ITNS LAL + +I+
Sbjct: 16842 HLRTLDSSVSKSMRKRIPTEIRV*KTALMYLESCITNSDWLALNMKRIL 16696
Score = 57.4 bits (119), Expect(6) = 2e-082
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3 / +3
Query: 372 RYMGTITEVSDADPVRWPSSYWRSVKV 452
RYMGTIT +SD D VRWP+S+WRSVKV
Sbjct: 16950 RYMGTITGISDLDSVRWPNSHWRSVKV 17030
Score = 50.6 bits (104), Expect(5) = 1e-028
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = -2 / -1
Query: 557 SQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH 444
S+ ++ WIHRKG Q LN P RN C FIPTNLH
Sbjct: 17263 SERKKRWIHRKGSQRLNLP*RNPWLSLPCSRFIPTNLH 17150
Score = 50.1 bits (103), Expect(5) = 1e-028
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = -2 / -1
Query: 251 PRIIENCEAAVXXXXXXXXCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIP 84
P + EN E A+ KES++HA+TR NR ++SL P +++S+++L+ IP
Sbjct: 16633 PWMKENSETAISCRSMCSSSKESNMHAITR*NR*WYNSLRPSGMTNSQKELILFIP 16466
Score = 49.6 bits (102), Expect(6) = 2e-082
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVSAKRLVAGDSV+FI
Sbjct: 16332 TGWSVFVSAKRLVAGDSVIFI 16394
Score = 46.9 bits (96), Expect(5) = 6e-057
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = -3 / -1
Query: 463 SSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
+S TFTD Q*E GQRT S SL VIVPMYL +
Sbjct: 17041 NSVVTFTDRQ*EFGQRTESRSLIPVIVPMYLES 16943
Score = 44.6 bits (91), Expect(5) = 1e-028
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = -2 / -1
Query: 389 YCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIEN 234
Y PADT L+ H ++HPN* RVKN +V K Y+K P EN
Sbjct: 16855 YVASSPADTRLFCLEEHAKAHPN*NTRVKNGFNVLGKLYHKLRLASPEHEEN 16700
Score = 36.3 bits (73), Expect(5) = 6e-057
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -3 / -1
Query: 82 MNSTESPATSLLALTNTLQPV 20
M TESPATS LALT TL PV
Sbjct: 16393 MKMTESPATSRLALTKTLHPV 16331
Score = 28.1 bits (55), Expect(5) = 1e-028
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 86 PYE*HRISSNKSLSTDKHTPAS 21
P E RISS SL TDK TP+S
Sbjct: 16397 PDENDRISSY*SLGTDKDTPSS 16332
Score = 28.1 bits (55), Expect(5) = 1e-028
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2 / -3
Query: 449 LH*SPIGTRPTHWVSITHFCYCPHVP 372
LH SP+ PT+ + IT+ Y HVP
Sbjct: 17027 LHRSPMRVWPTNRI*ITNTSYSTHVP 16950
Score = 27.6 bits (54), Expect(6) = 2e-082
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3 / +3
Query: 660 NFQSPGIGSWGQQRLHPSLLSNDHDQ 737
N+ S G+ W QQRL S + D++Q
Sbjct: 17613 NYPSVGLFPWMQQRLDLSQMGTDNNQ 17690
>gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL05d03R 5', mRNA
sequence
Length = 484
Score = 267 bits (577), Expect = 5e-070
Identities = 110/131 (83%), Positives = 118/131 (90%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWN+KNQLLLGIR A RPQTVMPSSVLSSDSMH+GLL
Sbjct: 88 TGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAA 267
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNSRFTIFYNPRASP+EFVIPL+KY+KAV+HTR+SVGMRFRMLFETEESSVRRYM
Sbjct: 268 AHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYM 447
Query: 381 GTITEVSDADP 413
GTIT + D DP
Sbjct: 448 GTITGICDLDP 480
Score = 197 bits (425), Expect = 4e-049
Identities = 93/137 (67%), Positives = 104/137 (75%)
Frame = -3 / -3
Query: 412 GSASLTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KI 233
GS S VIVPMY RTLDSSVSN+ILNRIPT+ RV* TA Y RGITNS GLALGL*K+
Sbjct: 479 GSRSQMPVIVPMYRRTLDSSVSNSILNRIPTETRV**TAFTYLARGITNSDGLALGL*KM 300
Query: 232 VKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATS 53
V RLFV AR P C+LSL++T+EG+TVCGR+A LIP + F SF M TESPATS
Sbjct: 299 VNRLFVAAA*AAAARRPKCILSLDKTDEGMTVCGRLARLIPRSN*FLSFQMKRTESPATS 120
Query: 52 LLALTNTLQPVSCRILW 2
LLALTNTLQPV R L+
Sbjct: 119 LLALTNTLQPVVRRCLF 69
Score = 141 bits (303), Expect = 3e-032
Identities = 57/129 (44%), Positives = 80/129 (62%)
Frame = +2 / +3
Query: 5 KNSARHWLECVCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHR 184
+ S H LE +C+C*+ CCW C+ H+E + +W +T P T+C A C +*Q+A R
Sbjct: 72 ETSPYHGLERICEC*KACCW*LCSFHLER*ESITSWYKTSQPTTNCHAFICFVK*QYAFR 251
Query: 185 TPCSSSSCCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIK 364
C SSSCC KQP+H+ L* G+S R+CYTP + + SH+ + W A+ D +*+* I
Sbjct: 252 PSCCSSSCCRYKQPIHHLL*PEGESIRVCYTPG*VCESGLSHSRLCWYAV*DAV*N*RI* 431
Query: 365 CPQVHGDNN 391
C VHG NN
Sbjct: 432 CSSVHGYNN 458
Score = 118 bits (252), Expect = 3e-025
Identities = 53/126 (42%), Positives = 74/126 (58%)
Frame = -2 / -2
Query: 404 ITHFCYCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEA 225
IT+ YC HVP +T F S K HP+ H N V N + +GYNK WT PR+IE+ E+
Sbjct: 471 ITNASYCTHVPTNTRFFSFKQHPKPHTNRDASVINRFHILSQGYNKL*WTRPRVIEDGES 292
Query: 224 AVXXXXXXXXCKESDVHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLS 45
AV K++ +H VT +NR H SLW S +K+ L+ ++P E +R++SNK S
Sbjct: 291 AVCSGSMSCCSKKA*MHTVT*QNR*RHDSLWSVGSSYTKK*LILIVPDEKNRVTSNKPFS 112
Query: 44 TDKHTP 27
T K+ P
Sbjct: 111 THKYAP 94
>gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds
Length = 3807
Score = 145 bits (312), Expect(2) = 2e-068
Identities = 60/95 (63%), Positives = 74/95 (77%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLF+ +EK+QL+LGIR A R + SSV+SSDSMHIG+L
Sbjct: 795 TGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAA 974
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
+S FTIF+NPRASP+EFV+PL+KY KA++
Sbjct: 975 AHANANSSPFTIFFNPRASPSEFVVPLAKYNKALY 1079
Score = 136 bits (292), Expect(2) = 2e-068
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = +3 / +3
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++VGWDESTAG+RP
Sbjct: 1077 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRP 1256
Query: 486 PRVSLWEIEPLTT 524
RVS+WEIEP+ T
Sbjct: 1257 SRVSIWEIEPVIT 1295
Score = 92.3 bits (195), Expect(2) = 3e-032
Identities = 49/99 (49%), Positives = 59/99 (59%)
Frame = -3 / -3
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 1072 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 893
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP+ S FS N TESPA SL LT TLQPV + L+
Sbjct: 892 LIPNISCDFSSLTNKTESPANSLFVLTKTLQPVVSKCLF 776
Score = 69.3 bits (145), Expect(2) = 3e-032
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = -2 / -2
Query: 575 IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITH 396
+PR+L S+ + ++ +FP S WP S *FIP+ L +P+ P++ V IT+
Sbjct: 1346 LPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYLKITPL*AFPSYRVKITN 1167
Query: 395 FCYCPHVPADT*FLSLK*HPESH 327
C C H+ + LSLK HPESH
Sbjct: 1166 TCDCTHISTNPTILSLKHHPESH 1098
>ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription factor AT1G19220 (ARF19)
mRNA, complete cds
Length = 3588
Score = 145 bits (312), Expect(2) = 2e-068
Identities = 60/95 (63%), Positives = 74/95 (77%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLF+ +EK+QL+LGIR A R + SSV+SSDSMHIG+L
Sbjct: 577 TGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAA 756
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
+S FTIF+NPRASP+EFV+PL+KY KA++
Sbjct: 757 AHANANSSPFTIFFNPRASPSEFVVPLAKYNKALY 861
Score = 136 bits (292), Expect(2) = 2e-068
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++VGWDESTAG+RP
Sbjct: 859 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRP 1038
Query: 486 PRVSLWEIEPLTT 524
RVS+WEIEP+ T
Sbjct: 1039 SRVSIWEIEPVIT 1077
Score = 92.3 bits (195), Expect(2) = 3e-032
Identities = 49/99 (49%), Positives = 59/99 (59%)
Frame = -3 / -2
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 854 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 675
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP+ S FS N TESPA SL LT TLQPV + L+
Sbjct: 674 LIPNISCDFSSLTNKTESPANSLFVLTKTLQPVVSKCLF 558
Score = 69.3 bits (145), Expect(2) = 3e-032
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = -2 / -1
Query: 575 IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITH 396
+PR+L S+ + ++ +FP S WP S *FIP+ L +P+ P++ V IT+
Sbjct: 1128 LPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYLKITPL*AFPSYRVKITN 949
Query: 395 FCYCPHVPADT*FLSLK*HPESH 327
C C H+ + LSLK HPESH
Sbjct: 948 TCDCTHISTNPTILSLKHHPESH 880
>gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete
cds
Length = 3292
Score = 145 bits (312), Expect(2) = 2e-068
Identities = 60/95 (63%), Positives = 74/95 (77%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLF+ +EK+QL+LGIR A R + SSV+SSDSMHIG+L
Sbjct: 577 TGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAA 756
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
+S FTIF+NPRASP+EFV+PL+KY KA++
Sbjct: 757 AHANANSSPFTIFFNPRASPSEFVVPLAKYNKALY 861
Score = 136 bits (292), Expect(2) = 2e-068
Identities = 49/73 (67%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++VGWDESTAG+RP
Sbjct: 859 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRP 1038
Query: 486 PRVSLWEIEPLTT 524
RVS+WEIEP+ T
Sbjct: 1039 SRVSIWEIEPVIT 1077
Score = 92.3 bits (195), Expect(2) = 3e-032
Identities = 49/99 (49%), Positives = 59/99 (59%)
Frame = -3 / -3
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 854 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 675
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP+ S FS N TESPA SL LT TLQPV + L+
Sbjct: 674 LIPNISCDFSSLTNKTESPANSLFVLTKTLQPVVSKCLF 558
Score = 69.3 bits (145), Expect(2) = 3e-032
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = -2 / -2
Query: 575 IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITH 396
+PR+L S+ + ++ +FP S WP S *FIP+ L +P+ P++ V IT+
Sbjct: 1128 LPRVLRSEKWRRTYVKRSYDGFDFPYGYSAWPISSC*FIPSYLKITPL*AFPSYRVKITN 949
Query: 395 FCYCPHVPADT*FLSLK*HPESH 327
C C H+ + LSLK HPESH
Sbjct: 948 TCDCTHISTNPTILSLKHHPESH 880
>ref|NM_180716.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.2
mRNA, complete cds
Length = 4557
Score = 148 bits (317), Expect(2) = 3e-068
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 1118 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 1297
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
NS FTIFYNPRA+P EFV+PL+KY KA++
Sbjct: 1298 AHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMY 1402
Score = 133 bits (286), Expect(2) = 3e-068
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 1400 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 1579
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1580 SRVSVWDIEPVLT 1618
Score = 103 bits (219), Expect(2) = 1e-036
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = -3 / -1
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS G ALGL*K+VK L + AR+PMCMLSL+ T+E C A
Sbjct: 1395 ALVYLAKGTTNSAGAALGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFAR 1216
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP++S F + TESPA SL LTNTLQPV + L+
Sbjct: 1215 LIPNRSCAFPSLIKRTESPAKSLFVLTNTLQPVVSKCLF 1099
Score = 73.0 bits (153), Expect(2) = 1e-036
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -1
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1617 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 1438
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 1437 IILNRIPRE 1411
>gb|AF042195.1|AF042195 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete
cds
Length = 4044
Score = 148 bits (317), Expect(2) = 3e-068
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 1118 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 1297
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
NS FTIFYNPRA+P EFV+PL+KY KA++
Sbjct: 1298 AHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMY 1402
Score = 133 bits (286), Expect(2) = 3e-068
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +2
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 1400 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 1579
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1580 SRVSVWDIEPVLT 1618
Score = 103 bits (219), Expect(2) = 1e-036
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = -3 / -1
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS G ALGL*K+VK L + AR+PMCMLSL+ T+E C A
Sbjct: 1395 ALVYLAKGTTNSAGAALGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFAR 1216
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP++S F + TESPA SL LTNTLQPV + L+
Sbjct: 1215 LIPNRSCAFPSLIKRTESPAKSLFVLTNTLQPVVSKCLF 1099
Score = 73.0 bits (153), Expect(2) = 1e-036
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -1
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1617 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 1438
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 1437 IILNRIPRE 1411
>gb|AY669789.1| Arabidopsis thaliana clone C105344 ARF7 (At5g20730) mRNA, complete
cds
Length = 3526
Score = 148 bits (317), Expect(2) = 3e-068
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 580 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 759
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
NS FTIFYNPRA+P EFV+PL+KY KA++
Sbjct: 760 AHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMY 864
Score = 133 bits (286), Expect(2) = 3e-068
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 862 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 1041
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1042 SRVSVWDIEPVLT 1080
Score = 103 bits (219), Expect(2) = 1e-036
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = -3 / -3
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS G ALGL*K+VK L + AR+PMCMLSL+ T+E C A
Sbjct: 857 ALVYLAKGTTNSAGAALGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFAR 678
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP++S F + TESPA SL LTNTLQPV + L+
Sbjct: 677 LIPNRSCAFPSLIKRTESPAKSLFVLTNTLQPVVSKCLF 561
Score = 73.0 bits (153), Expect(2) = 1e-036
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -3
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1079 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 900
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 899 IILNRIPRE 873
>gb|AY080595.1| Arabidopsis thaliana unknown protein (At5g20730) mRNA, partial cds
Length = 3413
Score = 148 bits (317), Expect(2) = 3e-068
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 223 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 402
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
NS FTIFYNPRA+P EFV+PL+KY KA++
Sbjct: 403 AHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMY 507
Score = 133 bits (286), Expect(2) = 3e-068
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 505 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 684
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 685 SRVSVWDIEPVLT 723
Score = 103 bits (219), Expect(2) = 1e-036
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = -3 / -1
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS G ALGL*K+VK L + AR+PMCMLSL+ T+E C A
Sbjct: 500 ALVYLAKGTTNSAGAALGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFAR 321
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP++S F + TESPA SL LTNTLQPV + L+
Sbjct: 320 LIPNRSCAFPSLIKRTESPAKSLFVLTNTLQPVVSKCLF 204
Score = 73.0 bits (153), Expect(2) = 1e-036
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -1
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 722 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 543
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 542 IILNRIPRE 516
>emb|AX505548.1| Sequence 243 from Patent WO0216655
Length = 3150
Score = 148 bits (317), Expect(2) = 3e-068
Identities = 63/95 (66%), Positives = 72/95 (75%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 577 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 756
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVF 305
NS FTIFYNPRA+P EFV+PL+KY KA++
Sbjct: 757 AHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMY 861
Score = 133 bits (286), Expect(2) = 3e-068
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 859 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 1038
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1039 SRVSVWDIEPVLT 1077
Score = 103 bits (219), Expect(2) = 1e-036
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = -3 / -2
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS G ALGL*K+VK L + AR+PMCMLSL+ T+E C A
Sbjct: 854 ALVYLAKGTTNSAGAALGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFAR 675
Query: 118 LIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
LIP++S F + TESPA SL LTNTLQPV + L+
Sbjct: 674 LIPNRSCAFPSLIKRTESPAKSLFVLTNTLQPVVSKCLF 558
Score = 73.0 bits (153), Expect(2) = 1e-036
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -2
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1076 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 897
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 896 IILNRIPRE 870
>gb|U79557.1|U79557 Arabidopsis thaliana IAA24 (IAA24) mRNA, partial cds
Length = 2690
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 637 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 816
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 817 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 996
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 997 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1161
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -1
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1160 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 981
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 980 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 801
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 800 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 621
Query: 4 W 2
+
Sbjct: 620 F 618
>gb|AF037229.1|AF037229 Arabidopsis thaliana transcription factor (MP) mRNA, complete cds
Length = 3106
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 890 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 1069
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 1070 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1249
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1250 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1414
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1413 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1234
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1233 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 1054
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 1053 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 874
Query: 4 W 2
+
Sbjct: 873 F 871
>emb|AX505602.1| Sequence 297 from Patent WO0216655
Length = 2709
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 673 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 852
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 853 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1032
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1033 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1197
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1196 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1017
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1016 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 837
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 836 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 657
Query: 4 W 2
+
Sbjct: 656 F 654
>gb|BT002050.1| Arabidopsis thaliana transcription factor (At1g19850) mRNA, complete
cds
Length = 3371
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 1147 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 1326
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 1327 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1506
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1507 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1671
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -1
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1670 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1491
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1490 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 1311
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 1310 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 1131
Query: 4 W 2
+
Sbjct: 1130 F 1128
>emb|AX651413.1| Sequence 208 from Patent WO03000898
Length = 2709
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 673 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 852
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 853 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1032
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1033 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1197
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1196 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1017
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1016 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 837
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 836 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 657
Query: 4 W 2
+
Sbjct: 656 F 654
>gb|AF334716.1| Arabidopsis thaliana clone C00027 (h) auxin response factor 5
(At1g19850) mRNA, complete cds
Length = 2709
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 673 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 852
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 853 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1032
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1033 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1197
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1196 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1017
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1016 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 837
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 836 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 657
Query: 4 W 2
+
Sbjct: 656 F 654
>gb|BT008805.1| Arabidopsis thaliana At1g19850 gene, complete cds
Length = 2709
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 673 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 852
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 853 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1032
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1033 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1197
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1196 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1017
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1016 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 837
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 836 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 657
Query: 4 W 2
+
Sbjct: 656 F 654
>ref|NM_101840.2| Arabidopsis thaliana MP (MONOPTEROS); transcription factor AT1G19850
(MP) mRNA, complete cds
Length = 3375
Score = 253 bits (547), Expect = 7e-066
Identities = 102/175 (58%), Positives = 131/175 (74%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 1147 TGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAA 1326
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
+ F IFYNPRA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RRYM
Sbjct: 1327 AHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYM 1506
Query: 381 GTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
GTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE + ++PSL
Sbjct: 1507 GTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL 1671
Score = 152 bits (327), Expect = 1e-035
Identities = 89/181 (49%), Positives = 104/181 (57%)
Frame = -3 / -2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYLR
Sbjct: 1670 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLRF 1491
Query: 364 LDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARS 185
+SSVSN I N IPT+ AL Y RGITNS G ALGL* I K + + AR+
Sbjct: 1490 PESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQALGL*NIKKGVRLAVA*AAAART 1311
Query: 184 PMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
PMC+LS ERT+EG VC R+A L P+ S FS MN TESPA +L TN L PV R L
Sbjct: 1310 PMCILSAERTDEGSAVCWRLARLTPTISCDFSSLMNKTESPALNLFDPTNKLHPVVRRCL 1131
Query: 4 W 2
+
Sbjct: 1130 F 1128
>ref|NM_180715.1| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.1
mRNA, complete cds
Length = 4341
Score = 133 bits (286), Expect(3) = 2e-063
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 1474 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 1653
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1654 SRVSVWDIEPVLT 1692
Score = 117 bits (251), Expect(3) = 2e-063
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 1189 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 1368
Query: 201 XXXXXTNSRFTIFYNPR 251
NS FTIFYNPR
Sbjct: 1369 AHANANNSPFTIFYNPR 1419
Score = 82.2 bits (173), Expect(2) = 2e-030
Identities = 42/83 (50%), Positives = 52/83 (62%)
Frame = -3 / -2
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNST 71
LGL*K+VK L + AR+PMCMLSL+ T+E C A LIP++S F + T
Sbjct: 1418 LGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFARLIPNRSCAFPSLIKRT 1239
Query: 70 ESPATSLLALTNTLQPVSCRILW 2
ESPA SL LTNTLQPV + L+
Sbjct: 1238 ESPAKSLFVLTNTLQPVVSKCLF 1170
Score = 73.0 bits (153), Expect(2) = 2e-030
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -2
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1691 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 1512
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 1511 IILNRIPRE 1485
Score = 33.1 bits (66), Expect(3) = 2e-063
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 252 ASPTEFVIPLSKYIKAVF 305
A+P EFV+PL+KY KA++
Sbjct: 1423 AAPAEFVVPLAKYTKAMY 1476
>ref|NM_122080.2| Arabidopsis thaliana NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); transcription
factor AT5G20730 (NPH4) transcript variant AT5G20730.3
mRNA, complete cds
Length = 4296
Score = 133 bits (286), Expect(3) = 2e-063
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 1474 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESAAGDRP 1653
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1654 SRVSVWDIEPVLT 1692
Score = 117 bits (251), Expect(3) = 2e-063
Identities = 52/77 (67%), Positives = 56/77 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KRL AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 1189 TGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 1368
Query: 201 XXXXXTNSRFTIFYNPR 251
NS FTIFYNPR
Sbjct: 1369 AHANANNSPFTIFYNPR 1419
Score = 82.2 bits (173), Expect(2) = 2e-030
Identities = 42/83 (50%), Positives = 52/83 (62%)
Frame = -3 / -2
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNST 71
LGL*K+VK L + AR+PMCMLSL+ T+E C A LIP++S F + T
Sbjct: 1418 LGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFARLIPNRSCAFPSLIKRT 1239
Query: 70 ESPATSLLALTNTLQPVSCRILW 2
ESPA SL LTNTLQPV + L+
Sbjct: 1238 ESPAKSLFVLTNTLQPVVSKCLF 1170
Score = 73.0 bits (153), Expect(2) = 2e-030
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -2
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1691 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFFHLTGSRSLIPVTVPIYRRTPHSSVSN 1512
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 1511 IILNRIPRE 1485
Score = 33.1 bits (66), Expect(3) = 2e-063
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 252 ASPTEFVIPLSKYIKAVF 305
A+P EFV+PL+KY KA++
Sbjct: 1423 AAPAEFVVPLAKYTKAMY 1476
>gb|AF022368.1|AF022368 Arabidopsis thaliana BIPOSTO (BIP) mRNA, complete cds
Length = 4341
Score = 133 bits (286), Expect(3) = 6e-063
Identities = 47/73 (64%), Positives = 63/73 (86%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERP 485
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR++++GWDES AG+RP
Sbjct: 1474 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWENSQWRNLQIGWDESAAGDRP 1653
Query: 486 PRVSLWEIEPLTT 524
RVS+W+IEP+ T
Sbjct: 1654 SRVSVWDIEPVLT 1692
Score = 116 bits (247), Expect(3) = 6e-063
Identities = 51/77 (66%), Positives = 55/77 (71%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS KR AGDSVLFI + K QLLLGIR A R Q + SSV+SSDSMHIG+L
Sbjct: 1189 TGWSVFVSTKRFFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAA 1368
Query: 201 XXXXXTNSRFTIFYNPR 251
NS FTIFYNPR
Sbjct: 1369 AHANANNSPFTIFYNPR 1419
Score = 80.8 bits (170), Expect(2) = 2e-030
Identities = 41/83 (49%), Positives = 52/83 (62%)
Frame = -3 / -2
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNST 71
LGL*K+VK L + AR+PMCMLSL+ T+E C A LIP++S F + T
Sbjct: 1418 LGL*KMVKGLLLALA*AAAARTPMCMLSLDITDEESAGCCLFARLIPNRSCAFPSLIKRT 1239
Query: 70 ESPATSLLALTNTLQPVSCRILW 2
ESPA +L LTNTLQPV + L+
Sbjct: 1238 ESPAKNLFVLTNTLQPVVSKCLF 1170
Score = 74.4 bits (156), Expect(2) = 2e-030
Identities = 39/69 (56%), Positives = 43/69 (62%)
Frame = -3 / -2
Query: 523 VVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRTLDSSVSN 344
V +GS+S ET GLSPA DSS P *E TGS SL V VP+Y RT SSVSN
Sbjct: 1691 VKTGSMSQTETRLGLSPAADSSHPI*RFRH*EFSHLTGSRSLIPVTVPIYRRTPHSSVSN 1512
Query: 343 NILNRIPTD 317
ILNRIP +
Sbjct: 1511 IILNRIPRE 1485
Score = 33.1 bits (66), Expect(3) = 6e-063
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 252 ASPTEFVIPLSKYIKAVF 305
A+P EFV+PL+KY KA++
Sbjct: 1423 AAPAEFVVPLAKYTKAMY 1476
>gb|AC025813.3|AC025813 Arabidopsis thaliana chromosome I clone F15H4, *** SEQUENCING IN
PROGRESS ***
Length = 91738
Score = 104 bits (221), Expect(4) = 3e-060
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3 / +1
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTE 266
+EK+QL+LGIR A R + SSV+SSDSMHIG+L +S FTIF+NPRASP+E
Sbjct: 30067 DEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSE 30246
Query: 267 FVIPLSKYIKAVF 305
FV+PL+KY KA++
Sbjct: 30247 FVVPLAKYNKALY 30285
Score = 85.4 bits (180), Expect(4) = 3e-060
Identities = 30/49 (61%), Positives = 41/49 (83%)
Frame = +3 / +1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++V
Sbjct: 30283 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 30429
Score = 60.2 bits (125), Expect(4) = 7e-030
Identities = 33/70 (47%), Positives = 41/70 (58%)
Frame = -3 / -3
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 30278 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 30099
Query: 118 LIPSKSWFFS 89
LIP+ S FS
Sbjct: 30098 LIPNISCDFS 30069
Score = 56.5 bits (117), Expect(4) = 3e-060
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3 / +3
Query: 447 KVGWDESTAGERPPRVSLWEIEPLTT 524
+VGWDESTAG+RP RVS+WEIEP+ T
Sbjct: 30501 QVGWDESTAGDRPSRVSIWEIEPVIT 30578
Score = 46.0 bits (94), Expect(4) = 7e-030
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -3 / -3
Query: 415 TGSASLTSVIVPMYLRTLDSSVSNNILNRIPTD 317
TGS SL V VP+YLRT SSVSN I N IP D
Sbjct: 30392 TGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRD 30294
Score = 46.0 bits (94), Expect(4) = 3e-060
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLF+
Sbjct: 29925 TGWSVFVSTKRLFAGDSVLFV 29987
Score = 42.8 bits (87), Expect(4) = 7e-030
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3 / -1
Query: 523 VVSGSISHRETLGGLSPAVDSSQPT 449
V++GSISH +T GLSPAVDSS PT
Sbjct: 30577 VMTGSISHMDTRLGLSPAVDSSHPT 30503
Score = 39.6 bits (80), Expect(4) = 7e-030
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3 / -1
Query: 103 SWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
S + S+ N TESPA SL LT TLQPV + L+
Sbjct: 30007 SKYDSYLTNKTESPANSLFVLTKTLQPVVSKCLF 29906
>gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 58738
Score = 104 bits (221), Expect(4) = 3e-060
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3 / -2
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTE 266
+EK+QL+LGIR A R + SSV+SSDSMHIG+L +S FTIF+NPRASP+E
Sbjct: 20781 DEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSE 20602
Query: 267 FVIPLSKYIKAVF 305
FV+PL+KY KA++
Sbjct: 20601 FVVPLAKYNKALY 20563
Score = 85.4 bits (180), Expect(4) = 3e-060
Identities = 30/49 (61%), Positives = 41/49 (83%)
Frame = +3 / -2
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++V
Sbjct: 20565 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 20419
Score = 60.2 bits (125), Expect(4) = 7e-030
Identities = 33/70 (47%), Positives = 41/70 (58%)
Frame = -3 / +2
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 20570 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 20749
Query: 118 LIPSKSWFFS 89
LIP+ S FS
Sbjct: 20750 LIPNISCDFS 20779
Score = 56.5 bits (117), Expect(4) = 3e-060
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3 / -1
Query: 447 KVGWDESTAGERPPRVSLWEIEPLTT 524
+VGWDESTAG+RP RVS+WEIEP+ T
Sbjct: 20347 QVGWDESTAGDRPSRVSIWEIEPVIT 20270
Score = 46.0 bits (94), Expect(4) = 3e-060
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLF+
Sbjct: 20923 TGWSVFVSTKRLFAGDSVLFV 20861
Score = 46.0 bits (94), Expect(4) = 7e-030
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -3 / +2
Query: 415 TGSASLTSVIVPMYLRTLDSSVSNNILNRIPTD 317
TGS SL V VP+YLRT SSVSN I N IP D
Sbjct: 20456 TGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRD 20554
Score = 42.8 bits (87), Expect(4) = 7e-030
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3 / +3
Query: 523 VVSGSISHRETLGGLSPAVDSSQPT 449
V++GSISH +T GLSPAVDSS PT
Sbjct: 20271 VMTGSISHMDTRLGLSPAVDSSHPT 20345
Score = 39.6 bits (80), Expect(4) = 7e-030
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3 / +3
Query: 103 SWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
S + S+ N TESPA SL LT TLQPV + L+
Sbjct: 20841 SKYDSYLTNKTESPANSLFVLTKTLQPVVSKCLF 20942
>gb|AY008390.1| Arabidopsis thaliana ARF11/IAA22 gene, complete cds
Length = 7371
Score = 104 bits (221), Expect(4) = 3e-060
Identities = 42/73 (57%), Positives = 55/73 (75%)
Frame = +3 / +2
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTE 266
+EK+QL+LGIR A R + SSV+SSDSMHIG+L +S FTIF+NPRASP+E
Sbjct: 2993 DEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSE 3172
Query: 267 FVIPLSKYIKAVF 305
FV+PL+KY KA++
Sbjct: 3173 FVVPLAKYNKALY 3211
Score = 85.4 bits (180), Expect(4) = 3e-060
Identities = 30/49 (61%), Positives = 41/49 (83%)
Frame = +3 / +2
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETE+ VRRYMGT+T +SD DPVRW S WR+++V
Sbjct: 3209 YAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQV 3355
Score = 60.2 bits (125), Expect(4) = 8e-030
Identities = 33/70 (47%), Positives = 41/70 (58%)
Frame = -3 / -1
Query: 298 ALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVAC 119
AL+Y +G TNS GLALGL K+VK L + A PMC+LSL+ T+E A
Sbjct: 3204 ALLYLAKGTTNSEGLALGLKKMVKGLLLALA*AAAASIPMCILSLDMTDEERVGVCLFAR 3025
Query: 118 LIPSKSWFFS 89
LIP+ S FS
Sbjct: 3024 LIPNISCDFS 2995
Score = 56.5 bits (117), Expect(4) = 3e-060
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3 / +1
Query: 447 KVGWDESTAGERPPRVSLWEIEPLTT 524
+VGWDESTAG+RP RVS+WEIEP+ T
Sbjct: 3427 QVGWDESTAGDRPSRVSIWEIEPVIT 3504
Score = 46.0 bits (94), Expect(4) = 8e-030
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -3 / -1
Query: 415 TGSASLTSVIVPMYLRTLDSSVSNNILNRIPTD 317
TGS SL V VP+YLRT SSVSN I N IP D
Sbjct: 3318 TGSRSLIPVTVPIYLRTPQSSVSNIIRNLIPRD 3220
Score = 46.0 bits (94), Expect(4) = 3e-060
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLF+
Sbjct: 2851 TGWSVFVSTKRLFAGDSVLFV 2913
Score = 42.8 bits (87), Expect(4) = 8e-030
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = -3 / -2
Query: 523 VVSGSISHRETLGGLSPAVDSSQPT 449
V++GSISH +T GLSPAVDSS PT
Sbjct: 3503 VMTGSISHMDTRLGLSPAVDSSHPT 3429
Score = 39.6 bits (80), Expect(4) = 8e-030
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3 / -2
Query: 103 SWFFSFHMNSTESPATSLLALTNTLQPVSCRILW 2
S + S+ N TESPA SL LT TLQPV + L+
Sbjct: 2933 SKYDSYLTNKTESPANSLFVLTKTLQPVVSKCLF 2832
>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
Length = 89490
Score = 87.2 bits (184), Expect(5) = 3e-057
Identities = 31/49 (63%), Positives = 42/49 (85%)
Frame = +3 / -1
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR+++V
Sbjct: 52659 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQV 52513
Score = 76.2 bits (160), Expect(5) = 3e-057
Identities = 33/53 (62%), Positives = 36/53 (67%)
Frame = +3 / -3
Query: 93 KNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
K QLLLGIR A R Q + SSV+SSDSMHIG+L NS FTIFYNPR
Sbjct: 52963 KAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 52805
Score = 54.2 bits (112), Expect(5) = 3e-057
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +3 / -3
Query: 444 VKVGWDESTAGERPPRVSLWEIEPLTT 524
+K+GWDES AG+RP RVS+W+IEP+ T
Sbjct: 52423 LKIGWDESAAGDRPSRVSVWDIEPVLT 52343
Score = 46.4 bits (95), Expect(5) = 3e-057
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / -2
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLFI
Sbjct: 53117 TGWSVFVSTKRLFAGDSVLFI 53055
Score = 35.4 bits (71), Expect(5) = 3e-057
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3 / -1
Query: 249 RASPTEFVIPLSKYIKAVF 305
RA+P EFV+PL+KY KA++
Sbjct: 52713 RAAPAEFVVPLAKYTKAMY 52657
>gb|AY008392.1| Arabidopsis thaliana ARF7 (ARF7) gene, complete cds
Length = 7703
Score = 87.2 bits (184), Expect(5) = 3e-057
Identities = 31/49 (63%), Positives = 42/49 (85%)
Frame = +3 / +2
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR+++V
Sbjct: 4127 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQV 4273
Score = 76.2 bits (160), Expect(5) = 3e-057
Identities = 33/53 (62%), Positives = 36/53 (67%)
Frame = +3 / +1
Query: 93 KNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
K QLLLGIR A R Q + SSV+SSDSMHIG+L NS FTIFYNPR
Sbjct: 3823 KAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 3981
Score = 54.2 bits (112), Expect(5) = 3e-057
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +3 / +1
Query: 444 VKVGWDESTAGERPPRVSLWEIEPLTT 524
+K+GWDES AG+RP RVS+W+IEP+ T
Sbjct: 4363 LKIGWDESAAGDRPSRVSVWDIEPVLT 4443
Score = 46.4 bits (95), Expect(5) = 3e-057
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLFI
Sbjct: 3669 TGWSVFVSTKRLFAGDSVLFI 3731
Score = 35.4 bits (71), Expect(5) = 3e-057
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3 / +2
Query: 249 RASPTEFVIPLSKYIKAVF 305
RA+P EFV+PL+KY KA++
Sbjct: 4073 RAAPAEFVVPLAKYTKAMY 4129
>gb|AF186466.1|AF186466 Arabidopsis thaliana non-phototropic hypocotyl 4 (NPH4) gene,
complete cds
Length = 7317
Score = 87.2 bits (184), Expect(5) = 3e-057
Identities = 31/49 (63%), Positives = 42/49 (85%)
Frame = +3 / +3
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKV 452
+ ++S+GMRFRM+FETEE VRRYMGT+T +SD DPVRW +S WR+++V
Sbjct: 4122 YAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQV 4268
Score = 76.2 bits (160), Expect(5) = 3e-057
Identities = 33/53 (62%), Positives = 36/53 (67%)
Frame = +3 / +2
Query: 93 KNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
K QLLLGIR A R Q + SSV+SSDSMHIG+L NS FTIFYNPR
Sbjct: 3818 KAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPR 3976
Score = 54.2 bits (112), Expect(5) = 3e-057
Identities = 18/27 (66%), Positives = 24/27 (88%)
Frame = +3 / +2
Query: 444 VKVGWDESTAGERPPRVSLWEIEPLTT 524
+K+GWDES AG+RP RVS+W+IEP+ T
Sbjct: 4358 LKIGWDESAAGDRPSRVSVWDIEPVLT 4438
Score = 46.4 bits (95), Expect(5) = 3e-057
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWSVFVS KRL AGDSVLFI
Sbjct: 3664 TGWSVFVSTKRLFAGDSVLFI 3726
Score = 35.4 bits (71), Expect(5) = 3e-057
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3 / +3
Query: 249 RASPTEFVIPLSKYIKAVF 305
RA+P EFV+PL+KY KA++
Sbjct: 4068 RAAPAEFVVPLAKYTKAMY 4124
>gb|AC007797.7|AC007797 Arabidopsis thaliana chromosome I BAC F6F9 genomic sequence, complete
sequence
Length = 119942
Score = 83.5 bits (176), Expect(4) = 2e-053
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +3 / -3
Query: 351 TEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFP 530
T V RYMGTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE +
Sbjct: 33507 TRFGCVFRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLF 33328
Query: 531 MYPSL 545
++PSL
Sbjct: 33327 IFPSL 33313
Score = 77.1 bits (162), Expect(4) = 2e-053
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +3 / -1
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+EK+QL++G+R A R QT +PSSVLS+DSMHIG+L + F IFYNPR
Sbjct: 33938 DEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 33774
Score = 65.7 bits (137), Expect(4) = 2e-053
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3 / -2
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RR
Sbjct: 33694 RACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRR 33569
Score = 53.3 bits (110), Expect(3) = 6e-021
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = -3 / +1
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFS 89
LGL* I K + + AR+PMC+LS ERT+EG VC R+A L P+ S FS
Sbjct: 33775 LGL*NIKKGVRLAVA*AAAARTPMCILSAERTDEGSAVCWRLARLTPTISCDFS 33936
Score = 46.4 bits (95), Expect(3) = 6e-021
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -3 / +3
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
YLR +SSVSN I N IPT+ AL Y RGITNS G AL
Sbjct: 33567 YLRFPESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQAL 33695
Score = 42.8 bits (87), Expect(4) = 2e-053
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / -1
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWS+FV +KRL AGDSVLFI
Sbjct: 34100 TGWSLFVGSKRLRAGDSVLFI 34038
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 26/60 (43%), Positives = 30/60 (50%)
Frame = -3 / +2
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYL T
Sbjct: 33314 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLNT 33493
>gb|AF037228.1|AF037228 Arabidopsis thaliana transcription factor (MP) gene, complete cds
Length = 4224
Score = 83.5 bits (176), Expect(4) = 2e-053
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +3 / +2
Query: 351 TEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFP 530
T V RYMGTI +SD DP+RWP S WR+++V WDE ++P RVS W+IE +
Sbjct: 2075 TRFGCVFRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLF 2254
Query: 531 MYPSL 545
++PSL
Sbjct: 2255 IFPSL 2269
Score = 77.1 bits (162), Expect(4) = 2e-053
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +3 / +3
Query: 87 NEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPR 251
+EK+QL++G+R A R QT +PSSVLS+DSMHIG+L + F IFYNPR
Sbjct: 1644 DEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPR 1808
Score = 65.7 bits (137), Expect(4) = 2e-053
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +3 / +1
Query: 249 RASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRR 374
RA P EFVIPL+KY KA+ +++SVGMRF M+FETE+S RR
Sbjct: 1888 RACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRR 2013
Score = 53.3 bits (110), Expect(3) = 7e-021
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = -3 / -3
Query: 250 LGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFS 89
LGL* I K + + AR+PMC+LS ERT+EG VC R+A L P+ S FS
Sbjct: 1807 LGL*NIKKGVRLAVA*AAAARTPMCILSAERTDEGSAVCWRLARLTPTISCDFS 1646
Score = 46.4 bits (95), Expect(3) = 7e-021
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -3 / -2
Query: 376 YLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLAL 248
YLR +SSVSN I N IPT+ AL Y RGITNS G AL
Sbjct: 2015 YLRFPESSVSNIIPNLIPTES*DPHIALRYLARGITNSAGQAL 1887
Score = 42.8 bits (87), Expect(4) = 2e-053
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFI 83
TGWS+FV +KRL AGDSVLFI
Sbjct: 1482 TGWSLFVGSKRLRAGDSVLFI 1544
Score = 40.9 bits (83), Expect(3) = 7e-021
Identities = 26/60 (43%), Positives = 30/60 (50%)
Frame = -3 / -1
Query: 544 RDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSASLTSVIVPMYLRT 365
R+G + ++ SISH T GLS SS T E G GS SL IVPMYL T
Sbjct: 2268 REGKMKRLSGVSISHGLTRVGLSLHPGSSHST*RLRHLEPGHLNGSKSLIPTIVPMYLNT 2089
>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.1
mRNA, complete cds
Length = 3513
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1192 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1371
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1372 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1473
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1486 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1665
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1666 PWKVEPALAPPALSPVPMPRPKRP 1737
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
factor (At5g62000) mRNA, complete cds
Length = 3498
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1192 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1371
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1372 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1473
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1486 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1665
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1666 PWKVEPALAPPALSPVPMPRPKRP 1737
>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000 (ARF2)
transcript variant AT5G62000.3 mRNA, complete cds
Length = 3387
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1066 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1245
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1246 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1347
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1360 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1539
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1540 PWKVEPALAPPALSPVPMPRPKRP 1611
>emb|CS165494.1| Sequence 2 from Patent WO2005085453
Length = 3384
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1066 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1245
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1246 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1347
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1360 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1539
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1540 PWKVEPALAPPALSPVPMPRPKRP 1611
>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.2
mRNA, complete cds
Length = 3384
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1066 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1245
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1246 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1347
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1360 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1539
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1540 PWKVEPALAPPALSPVPMPRPKRP 1611
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-31-F22
Length = 3335
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1000 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1179
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1180 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1281
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1294 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1473
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1474 PWKVEPALAPPALSPVPMPRPKRP 1545
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-07-O11
Length = 3317
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1029 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1208
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1209 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1310
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1323 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1502
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1503 PWKVEPALAPPALSPVPMPRPKRP 1574
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-09-L23
Length = 3317
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1029 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1208
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1209 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1310
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1323 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1502
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1503 PWKVEPALAPPALSPVPMPRPKRP 1574
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-16-M02
Length = 3317
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1029 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1208
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1209 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1310
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1323 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1502
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1503 PWKVEPALAPPALSPVPMPRPKRP 1574
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-18-M11
Length = 3316
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 981 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1160
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1161 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1262
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1275 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1454
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1455 PWKVEPALAPPALSPVPMPRPKRP 1526
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-19-K22
Length = 3275
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 979 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1158
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1159 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1260
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1273 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1452
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1453 PWKVEPALAPPALSPVPMPRPKRP 1524
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
Length = 3171
Score = 122 bits (260), Expect(2) = 7e-051
Identities = 46/94 (48%), Positives = 68/94 (72%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
+GWSVFVS+KRLVAGD+ +F+ E +L +G+R A R Q +PSSV+SS SMH+G+L
Sbjct: 1031 SGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATA 1210
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP+EF++P +Y+++V
Sbjct: 1211 WHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESV 1312
Score = 101 bits (216), Expect(2) = 7e-051
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = +3 / +2
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + ++DP RWP S WRS+KV WDE+++ RP RVS
Sbjct: 1325 SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVS 1504
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHP 569
W++EP P + R K P
Sbjct: 1505 PWKVEPALAPPALSPVPMPRPKRP 1576
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,029,854,054
Number of Sequences: 1013581
Number of extensions: 28289905
Number of successful extensions: 159836
Number of sequences better than 1.0e-020: 125
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 69883759305
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)