TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.2
(562 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots ... 187 3e-046
gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-... 187 3e-046
gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R2... 187 3e-046
gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C... 187 3e-046
emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cD... 187 3e-046
emb|CQ769015.1| Sequence 19 from Patent WO2004007730 187 3e-046
gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 187 3e-046
ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 187 3e-046
ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 187 3e-046
gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Siliqu... 184 2e-045
gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R2... 183 3e-045
gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, compl... 183 3e-045
emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cD... 183 3e-045
emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cD... 183 3e-045
emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cD... 183 3e-045
emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cD... 183 3e-045
gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence 183 3e-045
gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 183 3e-045
ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylste... 183 3e-045
ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylste... 183 3e-045
ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylste... 106 1e-041
gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, compl... 106 1e-041
gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana... 170 4e-041
gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana... 163 3e-039
gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P... 105 3e-037
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 102 3e-036
gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis tha... 102 3e-036
gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana... 142 7e-033
gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana... 139 7e-032
gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mR... 112 7e-024
gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol met... 112 7e-024
gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, compl... 112 7e-024
emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cD... 112 7e-024
emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cD... 112 7e-024
gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase... 112 7e-024
ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA... 112 7e-024
gb|AY087876.1| Arabidopsis thaliana clone 39135 mRNA, compl... 108 2e-022
gb|AY035393.1| Arabidopsis thaliana putative sterol 4-alpha... 108 2e-022
ref|NM_118404.2| Arabidopsis thaliana SMO1-2 (STEROL C4-MET... 108 2e-022
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 105 8e-022
ref|NM_118403.1| Arabidopsis thaliana SMO1-3 (STEROL 4-ALPH... 105 1e-021
emb|BX827501.1|CNS0A2TZ Arabidopsis thaliana Full-length cD... 103 5e-021
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 102 7e-021
>gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109c03F 3', mRNA sequence
Length = 617
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 512 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 333
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 332 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 246
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / +1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 256 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 435
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 436 IIHNQRVIR*GPVRAGPTMVAKPRNR 513
>gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase (SMO) mRNA,
partial cds
Length = 720
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 424 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 603
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 604 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 690
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 680 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 501
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 500 IIHNQRVIR*GPVRAGPTMVAKPRNR 423
>gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R20198) putative C-4
sterol methyl oxidase (At2g29390) mRNA, complete cds
Length = 1076
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 552 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 731
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 732 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 818
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 808 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 629
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 628 IIHNQRVIR*GPVRAGPTMVAKPRNR 551
>gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C-4 sterol methyl
oxidase (At2g29390) mRNA, complete cds
Length = 814
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 487 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 666
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 667 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 753
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 743 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 564
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 563 IIHNQRVIR*GPVRAGPTMVAKPRNR 486
>emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1281
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 817 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 996
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 997 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 1083
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 1073 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 894
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 893 IIHNQRVIR*GPVRAGPTMVAKPRNR 816
>emb|CQ769015.1| Sequence 19 from Patent WO2004007730
Length = 759
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 463 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 642
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 643 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 729
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 719 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 540
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 539 IIHNQRVIR*GPVRAGPTMVAKPRNR 462
>gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 783
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 487 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 666
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 667 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 753
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 743 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 564
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 563 IIHNQRVIR*GPVRAGPTMVAKPRNR 486
>ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.2 mRNA, complete
cds
Length = 1063
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 552 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 731
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 732 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 818
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 808 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 629
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 628 IIHNQRVIR*GPVRAGPTMVAKPRNR 551
>ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.3 mRNA, complete
cds
Length = 1328
Score = 187 bits (402), Expect = 3e-046
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 817 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 996
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 997 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 1083
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 1073 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 894
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 893 IIHNQRVIR*GPVRAGPTMVAKPRNR 816
>gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL67ZB01 5PRIM, mRNA sequence
Length = 972
Score = 184 bits (397), Expect = 2e-045
Identities = 69/89 (77%), Positives = 74/89 (83%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL + RV TVEAH GYHFPWSPSNFLPLYGG+DFHDY
Sbjct: 497 LFLGFATIVGPALTGPHLITLWLKKMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDY 676
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 677 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 763
Score = 116 bits (248), Expect = 5e-025
Identities = 56/86 (65%), Positives = 60/86 (69%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QSM*TNV+ * PDFV S R*W*SWKS PPY GRKF+GLHGK**P ASTV TL
Sbjct: 753 SVPKIQSM*TNVDE*LPDFV*SNR*W*SWKSAPPYRGRKFEGLHGK**PQCASTVSITLS 574
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
+ V R*GPV A VA PRN+
Sbjct: 573 IFFNQRVIR*GPVRAGPTMVAKPRNR 496
>gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R20187) At1g07420 mRNA,
complete sequence
Length = 1101
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 559 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 738
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 739 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 825
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 815 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 636
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 635 TIHNQRVIR*GPVRAGPTMVAKPRNR 558
>gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, complete sequence
Length = 1126
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 590 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 769
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 770 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 856
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 846 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 667
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 666 TIHNQRVIR*GPVRAGPTMVAKPRNR 589
>emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH62ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1051
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / -2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 507 LFLGFATIVGPALTGPHLITFWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 328
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 327 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 241
Score = 116 bits (247), Expect = 7e-025
Identities = 55/86 (63%), Positives = 60/86 (69%)
Frame = +1 / +2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 251 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 430
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R GPV A VA PRN+
Sbjct: 431 TIHNQKVIRWGPVRAGPTMVAKPRNR 508
>emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS49ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1318
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 787 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 966
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 967 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 1053
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 1043 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 864
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 863 TIHNQRVIR*GPVRAGPTMVAKPRNR 786
>emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL12ZC08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 606
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 27 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 206
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 207 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 293
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 283 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 104
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 103 TIHNQRVIR*GPVRAGPTMVAKPRNR 26
>emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZH05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1051
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 540 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 719
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 720 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 806
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 796 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 617
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 616 TIHNQRVIR*GPVRAGPTMVAKPRNR 539
>gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence
Length = 543
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 229 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 408
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 409 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 495
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 485 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 306
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 305 TIHNQRVIR*GPVRAGPTMVAKPRNR 228
>gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 801
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 487 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 666
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 667 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 753
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 743 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 564
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 563 TIHNQRVIR*GPVRAGPTMVAKPRNR 486
>ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.1 mRNA, complete
cds
Length = 1168
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 590 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 769
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 770 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 856
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 846 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 667
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 666 TIHNQRVIR*GPVRAGPTMVAKPRNR 589
>ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.2 mRNA, complete
cds
Length = 1365
Score = 183 bits (395), Expect = 3e-045
Identities = 70/89 (78%), Positives = 74/89 (83%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDY
Sbjct: 787 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDY 966
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 967 HHRLLYTKSGNYSSTFVYMDWIFGTDKGY 1053
Score = 118 bits (252), Expect = 2e-025
Identities = 56/86 (65%), Positives = 61/86 (70%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 1043 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 864
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA PRN+
Sbjct: 863 TIHNQRVIR*GPVRAGPTMVAKPRNR 786
>ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.1 mRNA, complete
cds
Length = 1104
Score = 106 bits (227), Expect(2) = 1e-041
Identities = 42/55 (76%), Positives = 43/55 (78%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGS 384
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGGS
Sbjct: 560 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGS 724
Score = 84.9 bits (179), Expect(2) = 1e-041
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / +2
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
+DFHDYHHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 758 ADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGY 862
>gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, complete sequence
Length = 1091
Score = 106 bits (227), Expect(2) = 1e-041
Identities = 42/55 (76%), Positives = 43/55 (78%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGS 384
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGGS
Sbjct: 560 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGS 724
Score = 84.9 bits (179), Expect(2) = 1e-041
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -3 / +2
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
+DFHDYHHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 758 ADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGY 862
>gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-12-G17 3',
mRNA sequence
Length = 512
Score = 170 bits (365), Expect = 4e-041
Identities = 63/78 (80%), Positives = 67/78 (85%)
Frame = -3 / -1
Query: 515 AXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGN 336
A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG+DFHDYHHR+LYTKSGN
Sbjct: 491 ALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGN 312
Query: 335 YASTFVYMDWLFRTDNGY 282
Y+STFVYMDW+F TD GY
Sbjct: 311 YSSTFVYMDWIFGTDKGY 258
Score = 107 bits (228), Expect = 3e-022
Identities = 51/75 (68%), Positives = 55/75 (73%)
Frame = +1 / +1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV QS+ T VE *FPDFVYS+R*W*SWKS PPY GRKF+ LHGK**P ASTV TL
Sbjct: 268 SVPKIQSIYTKVEE*FPDFVYSSR*W*SWKSAPPYRGRKFERLHGK**PQCASTVSSTLN 447
Query: 472 TXXSHXVNR*GPVXA 516
T + V R*GPV A
Sbjct: 448 TIHNQRVIR*GPVRA 492
>gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-L16 3',
mRNA sequence
Length = 445
Score = 163 bits (351), Expect = 3e-039
Identities = 59/73 (80%), Positives = 64/73 (87%)
Frame = -3 / -3
Query: 500 HLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTF 321
HL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STF
Sbjct: 443 HLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTF 264
Query: 320 VYMDWLFRTDNGY 282
VYMDW+F TD GY
Sbjct: 263 VYMDWIFGTDKGY 225
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
sequence
Length = 131743
Score = 105 bits (225), Expect(2) = 3e-037
Identities = 42/56 (75%), Positives = 43/56 (76%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSD 381
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG D
Sbjct: 48505 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGG*D 48672
Score = 71.2 bits (149), Expect(2) = 3e-037
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = -3 / +3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 48762 ADFHDYHHRLLYTKSGNYSSTFVYMDW 48842
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 102 bits (218), Expect(2) = 3e-036
Identities = 42/56 (75%), Positives = 42/56 (75%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSD 381
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG D
Sbjct: 2279362 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGG*D 2279529
Score = 71.2 bits (149), Expect(2) = 8e-021
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = +1 / -2
Query: 382 SEPPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRNK 549
S PPY GRKF+ LHGK**P ASTV TL T + V R*GPV A VA PRN+
Sbjct: 2279528 SYPPYRGRKFERLHGK**PQCASTVSSTLNTIHNQRVIR*GPVRAGPTMVAKPRNR 2279361
Score = 71.2 bits (149), Expect(2) = 3e-036
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = -3 / +3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 2279622 ADFHDYHHRLLYTKSGNYSSTFVYMDW 2279702
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1 / -3
Query: 304 NQSM*TNVEA*FPDFVYSTR*W*SWKS 384
+QS+ T VE *FPDFVYS+R*W*SWKS
Sbjct: 2279704 HQSIYTKVEE*FPDFVYSSR*W*SWKS 2279624
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
complete sequence
Length = 104830
Score = 102 bits (218), Expect(2) = 3e-036
Identities = 42/56 (75%), Positives = 42/56 (75%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSD 381
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG D
Sbjct: 64543 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGG*D 64376
Score = 71.2 bits (149), Expect(2) = 9e-021
Identities = 34/56 (60%), Positives = 37/56 (66%)
Frame = +1 / +3
Query: 382 SEPPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRNK 549
S PPY GRKF+ LHGK**P ASTV TL T + V R*GPV A VA PRN+
Sbjct: 64377 SYPPYRGRKFERLHGK**PQCASTVSSTLNTIHNQRVIR*GPVRAGPTMVAKPRNR 64544
Score = 71.2 bits (149), Expect(2) = 3e-036
Identities = 24/27 (88%), Positives = 27/27 (100%)
Frame = -3 / -3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
+DFHDYHHR+LYTKSGNY+STFVYMDW
Sbjct: 64283 ADFHDYHHRLLYTKSGNYSSTFVYMDW 64203
Score = 50.6 bits (104), Expect(2) = 9e-021
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1 / +1
Query: 304 NQSM*TNVEA*FPDFVYSTR*W*SWKS 384
+QS+ T VE *FPDFVYS+R*W*SWKS
Sbjct: 64201 HQSIYTKVEE*FPDFVYSSR*W*SWKS 64281
>gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-L18 3',
mRNA sequence
Length = 417
Score = 142 bits (305), Expect = 7e-033
Identities = 50/57 (87%), Positives = 54/57 (94%)
Frame = -3 / -3
Query: 452 VEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
VEAH GYHFPWSPSNFLPLYGG+DFHDYHHR+LYTKSGNY+STFVYMDW+F TD GY
Sbjct: 415 VEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFVYMDWIFGTDKGY 245
>gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-50-O18 3',
mRNA sequence
Length = 434
Score = 139 bits (298), Expect = 7e-032
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = -3 / -3
Query: 455 TVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNG 285
TVEAH GYHFPWSPSNFLPLYGG+DFHDYHHR+LYTK GNY+STFVYMDW+F TD G
Sbjct: 417 TVEAHCGYHFPWSPSNFLPLYGGADFHDYHHRLLYTKCGNYSSTFVYMDWIFGTDKG 247
>gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mRNA, complete cds
Length = 1315
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 693 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 872
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 873 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 959
>gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol methyl oxidase
(At4g12110/F16J13_180) mRNA, complete cds
Length = 897
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 547 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 726
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 727 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 813
>gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, complete sequence
Length = 1441
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 694 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 873
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 874 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 960
>emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS95ZE04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1013
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 614 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 793
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 794 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 880
>emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH45ZA11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1317
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 666 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 845
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 846 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 932
>gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase mRNA, complete cds
Length = 1469
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 660 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 839
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 840 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 926
>ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1);
catalytic AT4G12110 (SMO1-1) mRNA, complete cds
Length = 1441
Score = 112 bits (240), Expect = 7e-024
Identities = 40/89 (44%), Positives = 53/89 (59%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWSP+ ++P YGG+++HDY
Sbjct: 695 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSPTKYIPFYGGAEYHDY 874
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 875 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 961
>gb|AY087876.1| Arabidopsis thaliana clone 39135 mRNA, complete sequence
Length = 1299
Score = 108 bits (230), Expect = 2e-022
Identities = 39/89 (43%), Positives = 52/89 (58%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWS + ++P YGG+++HDY
Sbjct: 666 LLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSGYDFPWSLTKYIPFYGGAEYHDY 845
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 846 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 932
>gb|AY035393.1| Arabidopsis thaliana putative sterol 4-alpha-methyl-oxidase mRNA,
complete cds
Length = 900
Score = 108 bits (230), Expect = 2e-022
Identities = 39/89 (43%), Positives = 52/89 (58%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWS + ++P YGG+++HDY
Sbjct: 547 LLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSGYDFPWSLTKYIPFYGGAEYHDY 726
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 727 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 813
>ref|NM_118404.2| Arabidopsis thaliana SMO1-2 (STEROL C4-METHYL OXIDASE); catalytic
AT4G22756 (SMO1-2) mRNA, complete cds
Length = 1298
Score = 108 bits (230), Expect = 2e-022
Identities = 39/89 (43%), Positives = 52/89 (58%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWS + ++P YGG+++HDY
Sbjct: 665 LLLGIPTFLGPAIAPGHMITFWLWIALRQIEAIETHSGYDFPWSLTKYIPFYGGAEYHDY 844
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 845 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 931
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 105 bits (225), Expect = 8e-022
Identities = 42/56 (75%), Positives = 43/56 (76%)
Frame = -3 / -3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSD 381
LFLGFAT A TGPHL T WL M+ RV TVEAH GYHFPWSPSNFLPLYGG D
Sbjct: 12618310 LFLGFATIVGPALTGPHLITLWLWMMLRVIETVEAHCGYHFPWSPSNFLPLYGG*D 12618143
>ref|NM_118403.1| Arabidopsis thaliana SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE);
catalytic AT4G22753 (SMO1-3) mRNA, complete cds
Length = 876
Score = 105 bits (224), Expect = 1e-021
Identities = 39/89 (43%), Positives = 50/89 (56%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWS + +P YGG ++HDY
Sbjct: 535 LILGIPTFLGPAIAPGHIMTFWLWISLRQFEAIETHSGYDFPWSVTKLIPFYGGPEYHDY 714
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D+++ TD GY
Sbjct: 715 HHYVGGQSQSNFASVFTYCDYIYGTDKGY 801
>emb|BX827501.1|CNS0A2TZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS65ZD06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1248
Score = 103 bits (219), Expect = 5e-021
Identities = 39/89 (43%), Positives = 49/89 (55%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
L LG T A H+ T WL + R +E HSGY FPWS + ++P YGG+++HDY
Sbjct: 613 LLLGIPTFMGPAIAPGHMITFWLWIALRQMEAIETHSGYDFPWSLTKYIPFYGGAEYHDY 792
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HH V N+AS F Y D TD GY
Sbjct: 793 HHYVGGQSQSNFASVFTYCDHTHGTDKGY 879
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 102 bits (218), Expect = 7e-021
Identities = 42/56 (75%), Positives = 42/56 (75%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSD 381
LFLGFAT A TGPHL T WL MV RV TVEAH GYHFPWS SNFLPLYGG D
Sbjct: 2279515 LFLGFATIVGPALTGPHLITLWLWMVLRVLETVEAHCGYHFPWSLSNFLPLYGG*D 2279682
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 908,320,736
Number of Sequences: 1013581
Number of extensions: 10815027
Number of successful extensions: 169511
Number of sequences better than 1.0e-020: 46
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 32387566885
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)