TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY099791.1| Arabidopsis thaliana homeodomain transcripti... 139 1e-033
ref|NM_129025.2| Arabidopsis thaliana PHB (PHABULOSA); DNA ... 139 1e-033
gb|BT000335.1| Arabidopsis thaliana homeodomain transcripti... 139 1e-033
emb|AX507862.1| Sequence 2557 from Patent WO0216655 139 1e-033
emb|AJ441291.1|ATH441291 Arabidopsis thaliana mRNA for home... 139 1e-033
gb|BX836701.1|BX836701 BX836701 Arabidopsis thaliana Flower... 139 6e-033
gb|AY099631.1| Arabidopsis thaliana HD-zip transcription fa... 95 1e-030
ref|NM_119441.3| Arabidopsis thaliana ATHB-8 (HOMEOBOX GENE... 95 1e-030
gb|AV535435.1|AV535435 AV535435 Arabidopsis thaliana flower... 95 1e-030
emb|AX505386.1| Sequence 81 from Patent WO0216655 95 1e-030
gb|BT008798.1| Arabidopsis thaliana At4g32880 gene, complet... 95 1e-030
emb|AJ441292.1|ATH441292 Arabidopsis thaliana mRNA for home... 95 1e-030
gb|BP613588.1|BP613588 BP613588 RAFL16 Arabidopsis thaliana... 95 1e-030
gb|DR751598.1|DR751598 52-L022148-065-007-D07-SeLB MPIZ-ADI... 95 2e-030
gb|DR751573.1|DR751573 68-L022148-065-007-D09-SeLB MPIZ-ADI... 95 2e-030
emb|BX815318.1|CNS0AATA Arabidopsis thaliana Full-length cD... 127 3e-030
ref|NM_102785.3| Arabidopsis thaliana PHV (PHAVOLUTA); DNA ... 127 3e-030
emb|AX506311.1| Sequence 1006 from Patent WO0216655 127 3e-030
emb|AJ440967.1|ATH440967 Arabidopsis thaliana mRNA for home... 127 3e-030
dbj|AK221046.1| Arabidopsis thaliana mRNA for HD-Zip protei... 127 3e-030
gb|DR751584.1|DR751584 60-L022148-065-007-D08-SeLB MPIZ-ADI... 127 5e-030
ref|NM_179464.1| Arabidopsis thaliana ATHB-15 (INCURVATA 4)... 129 6e-030
ref|NM_104096.2| Arabidopsis thaliana ATHB-15 (INCURVATA 4)... 129 6e-030
gb|AY060556.1| Arabidopsis thaliana At1g52150/F5F19_21 mRNA... 129 6e-030
emb|AX505646.1| Sequence 341 from Patent WO0216655 129 6e-030
emb|AJ439449.1|ATH439449 Arabidopsis thaliana mRNA for home... 129 6e-030
gb|AC003096.3| Arabidopsis thaliana chromosome 2 clone T29F... 82 9e-030
emb|Y11122.1|ATHB14 A.thaliana ATHB-14 gene 82 1e-029
gb|AV523113.1|AV523113 AV523113 Arabidopsis thaliana aboveg... 132 1e-029
gb|BX835677.1|BX835677 BX835677 Arabidopsis thaliana Adult ... 123 6e-029
gb|AV803829.1|AV803829 AV803829 RAFL9 Arabidopsis thaliana ... 129 9e-029
gb|AI999508.1|AI999508 701556212 A. thaliana, Columbia Col-... 95 1e-028
emb|BX818192.1|CNS0AEBW Arabidopsis thaliana Full-length cD... 118 2e-027
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 74 2e-026
gb|AC006216.1|F5F19 Arabidopsis thaliana chromosome 1 BAC F... 71 2e-026
gb|AC009917.2|F26G16 Arabidopsis thaliana chromosome 1 BAC ... 74 2e-026
emb|Y10922.1|ATHB9 A.thaliana ATHB-9 gene 74 2e-026
gb|AY902309.1| Arabidopsis thaliana CORONA (CNA) gene, comp... 71 2e-026
gb|DR751613.1|DR751613 44-L022148-065-007-D06-SeLB MPIZ-ADI... 71 3e-026
gb|AV556191.1|AV556191 AV556191 Arabidopsis thaliana green ... 120 4e-026
gb|BP615376.1|BP615376 BP615376 RAFL16 Arabidopsis thaliana... 95 6e-026
emb|BX816452.1|CNS0AD1U Arabidopsis thaliana Full-length cD... 113 8e-026
gb|CW843912.1|CW843912 GT10271.Ds3.09.29.2002.jw63.524 Arab... 69 2e-025
gb|AV546349.1|AV546349 AV546349 Arabidopsis thaliana roots ... 117 3e-025
gb|AV548912.1|AV548912 AV548912 Arabidopsis thaliana roots ... 117 3e-025
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 71 1e-024
ref|NM_125462.2| Arabidopsis thaliana REV (REVOLUTA); DNA b... 111 1e-024
gb|AF188994.1| Arabidopsis thaliana homeodomain-leucine zip... 111 1e-024
emb|CQ879860.1| Sequence 7 from Patent WO2004063379 111 1e-024
emb|BX830562.1|CNS09YQ2 Arabidopsis thaliana Full-length cD... 111 1e-024
gb|AF233592.1|AF233592 Arabidopsis thaliana REVOLUTA mRNA, ... 111 1e-024
emb|CQ804028.1| Sequence 439 from Patent WO2004035798 111 1e-024
gb|AV816036.1|AV816036 AV816036 RAFL9 Arabidopsis thaliana ... 113 4e-024
gb|AV531880.1|AV531880 AV531880 Arabidopsis thaliana flower... 110 5e-024
gb|AV546728.1|AV546728 AV546728 Arabidopsis thaliana roots ... 109 6e-024
gb|AV547587.1|AV547587 AV547587 Arabidopsis thaliana roots ... 107 2e-023
gb|BP611955.1|BP611955 BP611955 RAFL16 Arabidopsis thaliana... 93 6e-023
dbj|AB005246.1| Arabidopsis thaliana genomic DNA, chromosom... 61 6e-023
gb|AY170127.1| Arabidopsis thaliana homeodomain-leucine zip... 61 7e-023
gb|BP592955.1|BP592955 BP592955 RAFL15 Arabidopsis thaliana... 109 1e-022
gb|BP608671.1|BP608671 BP608671 RAFL16 Arabidopsis thaliana... 107 3e-022
gb|AI998244.1|AI998244 701544894 A. thaliana, Columbia Col-... 101 2e-021
gb|BP794843.1|BP794843 BP794843 RAFL7 Arabidopsis thaliana ... 104 2e-021
gb|AV803476.1|AV803476 AV803476 RAFL9 Arabidopsis thaliana ... 103 5e-021
gb|BP606389.1|BP606389 BP606389 RAFL16 Arabidopsis thaliana... 103 6e-021
gb|AV522953.1|AV522953 AV522953 Arabidopsis thaliana aboveg... 64 8e-021
>gb|AY099791.1| Arabidopsis thaliana homeodomain transcription factor (At2g34710)
mRNA, complete cds
Length = 3062
Score = 139 bits (298), Expect(2) = 1e-033
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR
Sbjct: 2559 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGR 2738
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 2739 MVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 2837
Score = 25.8 bits (50), Expect(2) = 1e-033
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +3
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2508 DAILCCSLKTNA 2543
>ref|NM_129025.2| Arabidopsis thaliana PHB (PHABULOSA); DNA binding / transcription
factor AT2G34710 (PHB) mRNA, complete cds
Length = 3060
Score = 139 bits (298), Expect(2) = 1e-033
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR
Sbjct: 2557 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGR 2736
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 2737 MVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 2835
Score = 25.8 bits (50), Expect(2) = 1e-033
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2506 DAILCCSLKTNA 2541
>gb|BT000335.1| Arabidopsis thaliana homeodomain transcription factor (At2g34710)
mRNA, complete cds
Length = 2663
Score = 139 bits (298), Expect(2) = 1e-033
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR
Sbjct: 2281 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGR 2460
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 2461 MVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 2559
Score = 25.8 bits (50), Expect(2) = 1e-033
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2230 DAILCCSLKTNA 2265
>emb|AX507862.1| Sequence 2557 from Patent WO0216655
Length = 2559
Score = 139 bits (298), Expect(2) = 1e-033
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR
Sbjct: 2281 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGR 2460
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 2461 MVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 2559
Score = 25.8 bits (50), Expect(2) = 1e-033
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2230 DAILCCSLKTNA 2265
>emb|AJ441291.1|ATH441291 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14
(ATHB-14 gene)
Length = 2559
Score = 139 bits (298), Expect(2) = 1e-033
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR
Sbjct: 2281 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGR 2460
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 2461 MVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 2559
Score = 25.8 bits (50), Expect(2) = 1e-033
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2230 DAILCCSLKTNA 2265
>gb|BX836701.1|BX836701 BX836701 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB76ZE12 3PRIM, mRNA sequence
Length = 1098
Score = 139 bits (298), Expect(2) = 6e-033
Identities = 55/93 (59%), Positives = 68/93 (73%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR
Sbjct: 466 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGR 287
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 286 MVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 188
Score = 23.5 bits (45), Expect(2) = 6e-033
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3 / -3
Query: 634 DAILCCSLKPPA 599
DAILCCSL A
Sbjct: 517 DAILCCSLNTNA 482
>gb|AY099631.1| Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880)
mRNA, complete cds
Length = 3004
Score = 95.5 bits (202), Expect(2) = 1e-030
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = -3 / +3
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 2688 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 2867
Query: 328 ANWTFI*GSQH 296
NW+FI* H
Sbjct: 2868 LNWSFI*PFFH 2900
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / +3
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 2559 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 2702
>ref|NM_119441.3| Arabidopsis thaliana ATHB-8 (HOMEOBOX GENE 8); DNA binding /
transcription factor AT4G32880 (ATHB-8) mRNA, complete
cds
Length = 3005
Score = 95.5 bits (202), Expect(2) = 1e-030
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = -3 / +3
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 2688 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 2867
Query: 328 ANWTFI*GSQH 296
NW+FI* H
Sbjct: 2868 LNWSFI*PFFH 2900
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / +3
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 2559 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 2702
>gb|AV535435.1|AV535435 AV535435 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096c10F 3', mRNA sequence
Length = 561
Score = 95.5 bits (202), Expect(2) = 1e-030
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = -3 / -2
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 305 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 126
Query: 328 ANWTFI*GSQH 296
NW+FI* H
Sbjct: 125 LNWSFI*PFFH 93
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / -2
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 434 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 291
>emb|AX505386.1| Sequence 81 from Patent WO0216655
Length = 2502
Score = 95.0 bits (201), Expect(2) = 1e-030
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = -3 / +1
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 2302 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 2481
Query: 328 ANWTFI* 308
NW+FI*
Sbjct: 2482 LNWSFI* 2502
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 2173 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 2316
>gb|BT008798.1| Arabidopsis thaliana At4g32880 gene, complete cds
Length = 2502
Score = 95.0 bits (201), Expect(2) = 1e-030
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = -3 / +1
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 2302 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 2481
Query: 328 ANWTFI* 308
NW+FI*
Sbjct: 2482 LNWSFI* 2502
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 2173 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 2316
>emb|AJ441292.1|ATH441292 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8
(hb-8 gene)
Length = 2502
Score = 95.0 bits (201), Expect(2) = 1e-030
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = -3 / +1
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 2302 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 2481
Query: 328 ANWTFI* 308
NW+FI*
Sbjct: 2482 LNWSFI* 2502
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 2173 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 2316
>gb|BP613588.1|BP613588 BP613588 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-93-K11 3',
mRNA sequence
Length = 505
Score = 95.0 bits (201), Expect(2) = 1e-030
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = -3 / -3
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 335 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRPVTYEKAVGWKVLNDDEDPHCICFMF 156
Query: 328 ANWTFI* 308
NW+FI*
Sbjct: 155 LNWSFI* 135
Score = 60.2 bits (125), Expect(2) = 1e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / -3
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 464 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 321
>gb|DR751598.1|DR751598 52-L022148-065-007-D07-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-D07, mRNA sequence
Length = 928
Score = 94.5 bits (200), Expect(2) = 2e-030
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = -3 / -3
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 290 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 111
Query: 328 ANWTFI 311
NW+FI
Sbjct: 110 LNWSFI 93
Score = 60.2 bits (125), Expect(2) = 2e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / -3
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 419 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 276
>gb|DR751573.1|DR751573 68-L022148-065-007-D09-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-D09, mRNA sequence
Length = 925
Score = 94.5 bits (200), Expect(2) = 2e-030
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = -3 / -3
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 290 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 111
Query: 328 ANWTFI 311
NW+FI
Sbjct: 110 LNWSFI 93
Score = 60.2 bits (125), Expect(2) = 2e-030
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = -3 / -3
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++CCSLK + FAN AG D+LETT+V +QD+ L+ + D K
Sbjct: 419 DAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGK 276
>emb|BX815318.1|CNS0AATA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS51ZC10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2956
Score = 127 bits (273), Expect(2) = 3e-030
Identities = 51/93 (54%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 2548 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 2727
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 2728 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 2826
Score = 25.8 bits (50), Expect(2) = 3e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2497 DAILCCSLKTNA 2532
>ref|NM_102785.3| Arabidopsis thaliana PHV (PHAVOLUTA); DNA binding / transcription
factor AT1G30490 (PHV) mRNA, complete cds
Length = 2878
Score = 127 bits (273), Expect(2) = 3e-030
Identities = 51/93 (54%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 2407 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 2586
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 2587 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 2685
Score = 25.8 bits (50), Expect(2) = 3e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2356 DAILCCSLKTNA 2391
>emb|AX506311.1| Sequence 1006 from Patent WO0216655
Length = 2526
Score = 127 bits (273), Expect(2) = 3e-030
Identities = 51/93 (54%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 2248 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 2427
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 2428 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 2526
Score = 25.8 bits (50), Expect(2) = 3e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2197 DAILCCSLKTNA 2232
>emb|AJ440967.1|ATH440967 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (hb9
gene)
Length = 2526
Score = 127 bits (273), Expect(2) = 3e-030
Identities = 51/93 (54%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 2248 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 2427
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 2428 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 2526
Score = 25.8 bits (50), Expect(2) = 3e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 2197 DAILCCSLKTNA 2232
>dbj|AK221046.1| Arabidopsis thaliana mRNA for HD-Zip protein, partial cds, clone:
RAFL22-75-F10
Length = 589
Score = 127 bits (273), Expect(2) = 3e-030
Identities = 51/93 (54%), Positives = 67/93 (72%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 122 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 301
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 302 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 400
Score = 25.8 bits (50), Expect(2) = 3e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +2
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 71 DAILCCSLKTNA 106
>gb|DR751584.1|DR751584 60-L022148-065-007-D08-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-D08, mRNA sequence
Length = 875
Score = 127 bits (272), Expect(2) = 5e-030
Identities = 50/92 (54%), Positives = 66/92 (71%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 369 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 190
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI 311
SYEQA WKVV D+ + CLA L +W+F+
Sbjct: 189 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV 94
Score = 25.8 bits (50), Expect(2) = 5e-030
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / -3
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 420 DAILCCSLKTNA 385
>ref|NM_179464.1| Arabidopsis thaliana ATHB-15 (INCURVATA 4); DNA binding /
transcription factor AT1G52150 (ATHB-15) transcript
variant AT1G52150.2 mRNA, complete cds
Length = 3433
Score = 129 bits (276), Expect(2) = 6e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR
Sbjct: 2953 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGR 3132
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 3133 PVSYERAVAWKVLNEEENAHCICFVFINWSFV* 3231
Score = 23.5 bits (45), Expect(2) = 6e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 2908 DAIICCSMK 2934
>ref|NM_104096.2| Arabidopsis thaliana ATHB-15 (INCURVATA 4); DNA binding /
transcription factor AT1G52150 (ATHB-15) transcript
variant AT1G52150.1 mRNA, complete cds
Length = 3430
Score = 129 bits (276), Expect(2) = 6e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR
Sbjct: 2950 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGR 3129
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 3130 PVSYERAVAWKVLNEEENAHCICFVFINWSFV* 3228
Score = 23.5 bits (45), Expect(2) = 6e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 2905 DAIICCSMK 2931
>gb|AY060556.1| Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds
Length = 3415
Score = 129 bits (276), Expect(2) = 6e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR
Sbjct: 2950 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGR 3129
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 3130 PVSYERAVAWKVLNEEENAHCICFVFINWSFV* 3228
Score = 23.5 bits (45), Expect(2) = 6e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 2905 DAIICCSMK 2931
>emb|AX505646.1| Sequence 341 from Patent WO0216655
Length = 2511
Score = 129 bits (276), Expect(2) = 6e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR
Sbjct: 2233 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGR 2412
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 2413 PVSYERAVAWKVLNEEENAHCICFVFINWSFV* 2511
Score = 23.5 bits (45), Expect(2) = 6e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 2188 DAIICCSMK 2214
>emb|AJ439449.1|ATH439449 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein
(ATHB-15 gene)
Length = 2511
Score = 129 bits (276), Expect(2) = 6e-030
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR
Sbjct: 2233 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGR 2412
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 2413 PVSYERAVAWKVLNEEENAHCICFVFINWSFV* 2511
Score = 23.5 bits (45), Expect(2) = 6e-030
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 2188 DAIICCSMK 2214
>gb|AC003096.3| Arabidopsis thaliana chromosome 2 clone T29F13 map ve016, complete
sequence
Length = 69817
Score = 81.7 bits (172), Expect(3) = 9e-030
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -3 / +2
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A+LP GVC SSMGR SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 32834 QGYAHLPAGVCASSMGRMVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 32983
Score = 62.9 bits (131), Expect(3) = 9e-030
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQ
Sbjct: 32622 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQ 32753
Score = 25.4 bits (49), Expect(3) = 9e-030
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 32486 DAILCCSLK 32512
>emb|Y11122.1|ATHB14 A.thaliana ATHB-14 gene
Length = 5316
Score = 81.7 bits (172), Expect(3) = 1e-029
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = -3 / +1
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A+LP GVC SSMGR SYEQA WKV+ DD + CLA M NW+F+*
Sbjct: 4903 QGYAHLPAGVCASSMGRMVSYEQATVWKVLEDDESNHCLAFMFVNWSFV* 5052
Score = 62.9 bits (131), Expect(3) = 1e-029
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQ
Sbjct: 4691 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQ 4822
Score = 25.4 bits (49), Expect(3) = 1e-029
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 4555 DAILCCSLK 4581
>gb|AV523113.1|AV523113 AV523113 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL16d11F 3', mRNA
sequence
Length = 415
Score = 132 bits (282), Expect = 1e-029
Identities = 52/88 (59%), Positives = 65/88 (73%)
Frame = -3 / -1
Query: 571 GFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYE 392
G D+LETT+V +QD+ L+ LDE G+KAL ++ P IMQQG A+LP GVC SSMGR SYE
Sbjct: 415 GLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAGVCASSMGRMVSYE 236
Query: 391 QAVAWKVVGDDGAPQCLALMLANWTFI* 308
QA WKV+ DD + CLA M NW+F+*
Sbjct: 235 QATVWKVLEDDESNHCLAFMFVNWSFV* 152
>gb|BX835677.1|BX835677 BX835677 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS85ZB09 3PRIM, mRNA
sequence
Length = 1142
Score = 123 bits (264), Expect(2) = 6e-029
Identities = 50/93 (53%), Positives = 66/93 (70%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IM QG A LP G+C SSMGR
Sbjct: 410 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIM*QGYANLPAGICVSSMGR 231
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 230 PVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 132
Score = 25.8 bits (50), Expect(2) = 6e-029
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 461 DAILCCSLKTNA 426
>gb|AV803829.1|AV803829 AV803829 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-36-P06 3',
mRNA sequence
Length = 410
Score = 129 bits (276), Expect = 9e-029
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR
Sbjct: 367 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGR 188
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 187 PVSYERAVAWKVLNEEENAHCICFVFINWSFV* 89
>gb|AI999508.1|AI999508 701556212 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701556212, mRNA sequence
Length = 445
Score = 95.5 bits (202), Expect(2) = 1e-028
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = -3 / -2
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 306 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 127
Query: 328 ANWTFI*GSQH 296
NW+FI* H
Sbjct: 126 LNWSFI*PFFH 94
Score = 52.8 bits (109), Expect(2) = 1e-028
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -3 / -2
Query: 634 DAILCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQK 491
DA++ CSLK + F N AG D+LETT+V +QD+ L+ + D K
Sbjct: 435 DAVMXCSLKALSPVXXFXNQAGLDMLETTLVALQDITLDKIFDNNNGK 292
>emb|BX818192.1|CNS0AEBW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL65ZF04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 824
Score = 118 bits (253), Expect(2) = 2e-027
Identities = 47/93 (50%), Positives = 64/93 (68%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LET ++ +QD+ L+ LD G++AL ++ IMQQG A LP G+C SMGR
Sbjct: 400 FANQAGLDMLETKLLELQDIMLDKTLDNSGRRALCSEFAKIMQQGYANLPAGICFLSMGR 579
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA WKVV ++ + CLA L +W+F+*
Sbjct: 580 PVSYEQATVWKVVDNNESNHCLAFTLVSWSFV* 678
Score = 25.8 bits (50), Expect(2) = 2e-027
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 349 DAILCCSLKTNA 384
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 74.4 bits (156), Expect(3) = 2e-026
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = -3 / -3
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A LP G+C SSMGR SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 10805257 QGYANLPAGICVSSMGRPVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 10805108
Score = 58.8 bits (122), Expect(3) = 2e-026
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQ
Sbjct: 10805458 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQ 10805327
Score = 25.4 bits (49), Expect(3) = 2e-026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 10805592 DAILCCSLK 10805566
>gb|AC006216.1|F5F19 Arabidopsis thaliana chromosome 1 BAC F5F19 sequence, complete sequence
Length = 110893
Score = 71.2 bits (149), Expect(3) = 2e-026
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3 / -2
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A L GG+C SSMGR SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 101550 QGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV* 101401
Score = 63.8 bits (133), Expect(3) = 2e-026
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGL 449
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQ L
Sbjct: 101758 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQVL 101621
Score = 23.5 bits (45), Expect(3) = 2e-026
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 101899 DAIICCSMK 101873
>gb|AC009917.2|F26G16 Arabidopsis thaliana chromosome 1 BAC F26G16 sequence, complete
sequence
Length = 75799
Score = 74.4 bits (156), Expect(3) = 2e-026
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = -3 / -3
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A LP G+C SSMGR SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 47327 QGYANLPAGICVSSMGRPVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 47178
Score = 58.8 bits (122), Expect(3) = 2e-026
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQ
Sbjct: 47528 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQ 47397
Score = 25.4 bits (49), Expect(3) = 2e-026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 47662 DAILCCSLK 47636
>emb|Y10922.1|ATHB9 A.thaliana ATHB-9 gene
Length = 5213
Score = 74.4 bits (156), Expect(3) = 2e-026
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = -3 / +3
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A LP G+C SSMGR SYEQA WKVV D+ + CLA L +W+F+*
Sbjct: 4794 QGYANLPAGICVSSMGRPVSYEQATVWKVVDDNESNHCLAFTLVSWSFV* 4943
Score = 58.8 bits (122), Expect(3) = 2e-026
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQ
Sbjct: 4593 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQ 4724
Score = 25.4 bits (49), Expect(3) = 2e-026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 4459 DAILCCSLK 4485
>gb|AY902309.1| Arabidopsis thaliana CORONA (CNA) gene, complete cds
Length = 4250
Score = 71.2 bits (149), Expect(3) = 2e-026
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3 / +2
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A L GG+C SSMGR SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 3998 QGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV* 4147
Score = 63.8 bits (133), Expect(3) = 2e-026
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGL 449
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQ L
Sbjct: 3790 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQVL 3927
Score = 23.5 bits (45), Expect(3) = 2e-026
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 3635 DAIICCSMK 3661
>gb|DR751613.1|DR751613 44-L022148-065-007-D06-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-D06, mRNA sequence
Length = 920
Score = 70.7 bits (148), Expect(3) = 3e-026
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -3 / -1
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI 311
QG A L GG+C SSMGR SYE+AVAWKV+ ++ C+ + NW+F+
Sbjct: 239 QGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV 93
Score = 63.8 bits (133), Expect(3) = 3e-026
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGL 449
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQ L
Sbjct: 447 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQVL 310
Score = 23.5 bits (45), Expect(3) = 3e-026
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 634 DAILCCSLK 608
DAI+CCS+K
Sbjct: 492 DAIICCSMK 466
>gb|AV556191.1|AV556191 AV556191 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ036f09F 3', mRNA sequence
Length = 463
Score = 120 bits (257), Expect = 4e-026
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = -3 / -3
Query: 574 AGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASY 395
AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR SY
Sbjct: 458 AGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGRPVSY 279
Query: 394 EQAVAWKVVGDDGAPQCLALMLANWTFI* 308
EQA WKVV D+ + CLA L +W+F+*
Sbjct: 278 EQATVWKVVDDNESNHCLAFTLVSWSFV* 192
>gb|BP615376.1|BP615376 BP615376 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-14-P18 3',
mRNA sequence
Length = 464
Score = 95.0 bits (201), Expect(3) = 6e-026
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = -3 / -2
Query: 508 DEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 329
+ G+K LS++ P IMQQG + GG+C SSMGR +YE+AV WKV+ DD P C+ M
Sbjct: 337 NNNGKKTLSSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMF 158
Query: 328 ANWTFI* 308
NW+FI*
Sbjct: 157 LNWSFI* 137
Score = 35.4 bits (71), Expect(3) = 6e-026
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3 / -2
Query: 574 AGFDILETTMVNIQDLPLEAVLDEEGQK 491
AG D+LETT+V +QD+ L+ + D K
Sbjct: 406 AGLDMLETTLVALQDITLDKIFDNNNGK 323
Score = 26.7 bits (52), Expect(3) = 6e-026
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3 / -1
Query: 631 AILCCSLKPPAFTLKFANSAGF 566
A++CCSLK + FAN F
Sbjct: 464 AVMCCSLKALSPVFTFANQGWF 399
>emb|BX816452.1|CNS0AD1U Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH49ZH04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1088
Score = 113 bits (241), Expect(2) = 8e-026
Identities = 46/86 (53%), Positives = 59/86 (68%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ LD+ G++AL ++ IMQQG A LP G+C SSMGR
Sbjct: 810 FANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAGICVSSMGR 989
Query: 406 QASYEQAVAWKVVGDDGAPQCLALML 329
SYEQA WKVV D+ + C L
Sbjct: 990 PVSYEQATVWKVVDDNESNHCFPFTL 1067
Score = 25.8 bits (50), Expect(2) = 8e-026
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / +3
Query: 634 DAILCCSLKPPA 599
DAILCCSLK A
Sbjct: 759 DAILCCSLKTNA 794
>gb|CW843912.1|CW843912 GT10271.Ds3.09.29.2002.jw63.524 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT10271, DNA sequence
Length = 524
Score = 68.9 bits (144), Expect(3) = 2e-025
Identities = 27/42 (64%), Positives = 30/42 (71%)
Frame = -3 / -2
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALM 332
QG A+LP GVC SSMGR SYEQA WKV+ DD + CLA M
Sbjct: 160 QGYAHLPAGVCASSMGRMVSYEQATVWKVLEDDESNHCLAFM 35
Score = 61.1 bits (127), Expect(3) = 2e-025
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN G D+LETT+V +QD+ L+ LDE G+K L ++ P IMQQ
Sbjct: 372 FANQTGLDMLETTLVALQDIMLDKTLDEPGRKGLCSEFPKIMQQ 241
Score = 25.4 bits (49), Expect(3) = 2e-025
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 508 DAILCCSLK 482
>gb|AV546349.1|AV546349 AV546349 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL12e01F 3', mRNA sequence
Length = 409
Score = 117 bits (250), Expect = 3e-025
Identities = 44/86 (51%), Positives = 62/86 (72%)
Frame = -3 / -1
Query: 565 DILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQA 386
D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR SYE+A
Sbjct: 409 DMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERA 230
Query: 385 VAWKVVGDDGAPQCLALMLANWTFI* 308
VAWKV+ ++ C+ + NW+F+*
Sbjct: 229 VAWKVLNEEENAHCICFVFINWSFV* 152
>gb|AV548912.1|AV548912 AV548912 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL64f03F 3', mRNA sequence
Length = 414
Score = 117 bits (250), Expect = 3e-025
Identities = 44/86 (51%), Positives = 62/86 (72%)
Frame = -3 / -3
Query: 565 DILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQA 386
D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG A L GG+C SSMGR SYE+A
Sbjct: 409 DMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERA 230
Query: 385 VAWKVVGDDGAPQCLALMLANWTFI* 308
VAWKV+ ++ C+ + NW+F+*
Sbjct: 229 VAWKVLNEEENAHCICFVFINWSFV* 152
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 71.2 bits (149), Expect(2) = 1e-024
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = -3 / -3
Query: 457 QGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
QG A L GG+C SSMGR SYE+AVAWKV+ ++ C+ + NW+F+*
Sbjct: 3769326 QGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINWSFV* 3769177
Score = 63.8 bits (133), Expect(2) = 1e-024
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGL 449
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQ L
Sbjct: 3769534 FANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQVL 3769397
>ref|NM_125462.2| Arabidopsis thaliana REV (REVOLUTA); DNA binding / lipid binding /
transcription factor AT5G60690 (REV) mRNA, complete cds
Length = 3860
Score = 111 bits (238), Expect(2) = 1e-024
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C P FAN AG D+LETT+V +QD+ LE + DE G+KA+ + +MQQG A
Sbjct: 2911 ILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQQGFA 3090
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKV 371
LP G+C S+MGR SYEQAVAWKV
Sbjct: 3091 CLPSGICVSTMGRHVSYEQAVAWKV 3165
Score = 23.1 bits (44), Expect(2) = 1e-024
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 346 CLALMLANWTFI* 308
CLA NW+F+*
Sbjct: 3202 CLAFSFVNWSFV* 3240
>gb|AF188994.1| Arabidopsis thaliana homeodomain-leucine zipper protein
interfascicular fiberless 1 (IFL1) mRNA, complete cds
Length = 3169
Score = 111 bits (238), Expect(2) = 1e-024
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C P FAN AG D+LETT+V +QD+ LE + DE G+KA+ + +MQQG A
Sbjct: 2704 ILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQQGFA 2883
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKV 371
LP G+C S+MGR SYEQAVAWKV
Sbjct: 2884 CLPSGICVSTMGRHVSYEQAVAWKV 2958
Score = 23.1 bits (44), Expect(2) = 1e-024
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 346 CLALMLANWTFI* 308
CLA NW+F+*
Sbjct: 2995 CLAFSFVNWSFV* 3033
>emb|CQ879860.1| Sequence 7 from Patent WO2004063379
Length = 3169
Score = 111 bits (238), Expect(2) = 1e-024
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C P FAN AG D+LETT+V +QD+ LE + DE G+KA+ + +MQQG A
Sbjct: 2704 ILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQQGFA 2883
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKV 371
LP G+C S+MGR SYEQAVAWKV
Sbjct: 2884 CLPSGICVSTMGRHVSYEQAVAWKV 2958
Score = 23.1 bits (44), Expect(2) = 1e-024
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 346 CLALMLANWTFI* 308
CLA NW+F+*
Sbjct: 2995 CLAFSFVNWSFV* 3033
>emb|BX830562.1|CNS09YQ2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB90ZC01 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 3152
Score = 111 bits (238), Expect(2) = 1e-024
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = -3 / +1
Query: 625 LCCSLKPPAFTLKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLA 446
+ C P FAN AG D+LETT+V +QD+ LE + DE G+KA+ + +MQQG A
Sbjct: 2815 ILCCSLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQQGFA 2994
Query: 445 YLPGGVCRSSMGRQASYEQAVAWKV 371
LP G+C S+MGR SYEQAVAWKV
Sbjct: 2995 RLPSGICVSTMGRHVSYEQAVAWKV 3069
Score = 23.1 bits (44), Expect(2) = 1e-024
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3 / +1
Query: 346 CLALMLANWTFI* 308
CLA NW+F+*
Sbjct: 3106 CLAFSFVNWSFV* 3144
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,040,179,993
Number of Sequences: 1013581
Number of extensions: 13557674
Number of successful extensions: 135679
Number of sequences better than 1.0e-020: 70
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 38568400260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)