TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 102 9e-021
gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 102 9e-021
gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 102 9e-021
gb|AY085242.1| Arabidopsis thaliana clone 14132 mRNA, compl... 102 9e-021
gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis tha... 102 9e-021
gb|AF229437.1| Arabidopsis thaliana expansin 10 (EXPA10) mR... 102 9e-021
gb|AF229431.1| Arabidopsis thaliana expansin 10 (EXPA10) ge... 102 9e-021
ref|NM_102440.3| Arabidopsis thaliana ATEXPA10 (ARABIDOPSIS... 102 9e-021
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 102 9e-021
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 9269244 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 9269399
>gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRNA, complete cds
Length = 1238
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 684 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 839
>gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRNA, complete cds
Length = 750
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +1
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 595 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 750
>gb|AY085242.1| Arabidopsis thaliana clone 14132 mRNA, complete sequence
Length = 1235
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 690 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 845
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
complete sequence
Length = 98630
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 60395 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 60550
>gb|AF229437.1| Arabidopsis thaliana expansin 10 (EXPA10) mRNA, complete cds
Length = 1189
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 638 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 793
>gb|AF229431.1| Arabidopsis thaliana expansin 10 (EXPA10) gene, complete cds
Length = 3705
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 2478 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 2633
>ref|NM_102440.3| Arabidopsis thaliana ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10)
AT1G26770 (ATEXPA10) mRNA, complete cds
Length = 1366
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 690 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 845
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 102 bits (218), Expect = 9e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN* 493
+WGQNWQSN+ L+GQALSF+VTTSDGR+VVS NAAP GW +GQTF+G QF *
Sbjct: 9260624 NWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR* 9260779
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,157,669,277
Number of Sequences: 1013581
Number of extensions: 14690619
Number of successful extensions: 131070
Number of sequences better than 1.0e-020: 13
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 41287966945
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)