TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 174 1e-053
emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ... 174 1e-053
emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosom... 174 1e-053
emb|BX828789.1|CNS0A4HZ Arabidopsis thaliana Full-length cD... 174 1e-053
ref|NM_117548.2| Arabidopsis thaliana DNA-directed RNA poly... 174 1e-053
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 174 3e-042
dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosom... 127 4e-035
ref|NM_113190.2| Arabidopsis thaliana DNA-directed RNA poly... 127 5e-035
gb|AY085637.1| Arabidopsis thaliana clone 16450 mRNA, compl... 127 5e-035
emb|BX825853.1|CNS0A7K1 Arabidopsis thaliana Full-length cD... 124 2e-034
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 127 6e-028
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 127 6e-028
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 174 bits (375), Expect(2) = 1e-053
Identities = 68/134 (50%), Positives = 100/134 (74%)
Frame = -1 / -3
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 4319774 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 4319595
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 4319594 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 4319415
Query: 417 YKYIGGENAMFMND 376
YKYI GEN +FMN+
Sbjct: 4319414 YKYIPGENPIFMNE 4319373
Score = 58.3 bits (121), Expect(2) = 1e-053
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = -1 / -3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 4319366 SRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 4319250
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1
Length = 206606
Score = 174 bits (375), Expect(2) = 1e-053
Identities = 68/134 (50%), Positives = 100/134 (74%)
Frame = -1 / -3
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 165036 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 164857
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 164856 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 164677
Query: 417 YKYIGGENAMFMND 376
YKYI GEN +FMN+
Sbjct: 164676 YKYIPGENPIFMNE 164635
Score = 58.3 bits (121), Expect(2) = 1e-053
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = -1 / -3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 164628 SRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 164512
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39
Length = 197976
Score = 174 bits (375), Expect(2) = 1e-053
Identities = 68/134 (50%), Positives = 100/134 (74%)
Frame = -1 / -1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 110532 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 110353
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 110352 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 110173
Query: 417 YKYIGGENAMFMND 376
YKYI GEN +FMN+
Sbjct: 110172 YKYIPGENPIFMNE 110131
Score = 58.3 bits (121), Expect(2) = 1e-053
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = -1 / -1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 110124 SRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 110008
>emb|BX828789.1|CNS0A4HZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL38ZH04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 713
Score = 174 bits (375), Expect(2) = 1e-053
Identities = 68/134 (50%), Positives = 100/134 (74%)
Frame = -1 / +3
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 12 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 191
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 192 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 371
Query: 417 YKYIGGENAMFMND 376
YKYI GEN +FMN+
Sbjct: 372 YKYIPGENPIFMNE 413
Score = 58.3 bits (121), Expect(2) = 1e-053
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = -1 / +3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 420 SRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 536
>ref|NM_117548.2| Arabidopsis thaliana DNA-directed RNA polymerase AT4G14660 mRNA,
complete cds
Length = 713
Score = 174 bits (375), Expect(2) = 1e-053
Identities = 68/134 (50%), Positives = 100/134 (74%)
Frame = -1 / +3
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 12 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 191
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 192 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 371
Query: 417 YKYIGGENAMFMND 376
YKYI GEN +FMN+
Sbjct: 372 YKYIPGENPIFMNE 413
Score = 58.3 bits (121), Expect(2) = 1e-053
Identities = 20/39 (51%), Positives = 31/39 (79%)
Frame = -1 / +3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
S+++ +T VR V+G +WME +R+FQ LA++ GD+LGPL
Sbjct: 420 SRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPL 536
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 174 bits (375), Expect = 3e-042
Identities = 68/134 (50%), Positives = 100/134 (74%)
Frame = -1 / -2
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I +D KGL+L++AI+V LLE ++A+KE GYY+AV L I E
Sbjct: 8407031 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 8406852
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GK+RE TG+VLFPV F+ +T K KGE++ G V ++LKHGVF++ GP+E+++L+ M +
Sbjct: 8406851 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 8406672
Query: 417 YKYIGGENAMFMND 376
YKYI GEN +FMN+
Sbjct: 8406671 YKYIPGENPIFMNE 8406630
>dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5
Length = 71327
Score = 127 bits (271), Expect(2) = 4e-035
Identities = 54/114 (47%), Positives = 77/114 (67%)
Frame = -1 / +1
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 27646 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 27825
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH 373
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN +
Sbjct: 27826 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQY 27987
Score = 43.7 bits (89), Expect(2) = 4e-035
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1 / +1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL* 253
S+++ VRF VL W EA++ F LA+I GD LGP *
Sbjct: 27991 SRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGPF* 28110
>ref|NM_113190.2| Arabidopsis thaliana DNA-directed RNA polymerase AT3G22900 mRNA,
complete cds
Length = 712
Score = 127 bits (271), Expect(2) = 5e-035
Identities = 54/114 (47%), Positives = 77/114 (67%)
Frame = -1 / +2
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 164 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 343
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH 373
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN +
Sbjct: 344 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQY 505
Score = 43.7 bits (89), Expect(2) = 5e-035
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1 / +2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL* 253
S+++ VRF VL W EA++ F LA+I GD LGP *
Sbjct: 509 SRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGPF* 628
>gb|AY085637.1| Arabidopsis thaliana clone 16450 mRNA, complete sequence
Length = 705
Score = 127 bits (271), Expect(2) = 5e-035
Identities = 54/114 (47%), Positives = 77/114 (67%)
Frame = -1 / +2
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 164 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 343
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH 373
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN +
Sbjct: 344 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQY 505
Score = 43.7 bits (89), Expect(2) = 5e-035
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1 / +2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL* 253
S+++ VRF VL W EA++ F LA+I GD LGP *
Sbjct: 509 SRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGPF* 628
>emb|BX825853.1|CNS0A7K1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL68ZB08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 687
Score = 124 bits (266), Expect(2) = 2e-034
Identities = 53/114 (46%), Positives = 76/114 (66%)
Frame = -1 / +1
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 139 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 318
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH 373
K GE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN +
Sbjct: 319 KMFNGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQY 480
Score = 43.7 bits (89), Expect(2) = 2e-034
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -1 / +1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL* 253
S+++ VRF VL W EA++ F LA+I GD LGP *
Sbjct: 484 SRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGPF* 603
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 127 bits (271), Expect = 6e-028
Identities = 54/114 (47%), Positives = 77/114 (67%)
Frame = -1 / +2
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 8065340 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 8065519
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH 373
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN +
Sbjct: 8065520 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQY 8065681
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 127 bits (271), Expect = 6e-028
Identities = 54/114 (47%), Positives = 77/114 (67%)
Frame = -1 / +1
Query: 714 GLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQ 535
GL+L++AI++RLLE + +A+K+ GY I L+ I EGK++E TG++ FPV F I
Sbjct: 8115712 GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 8115891
Query: 534 KPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDH 373
K KGE++ G V ++ K GVFLKSGP E I+L+ M Y++I GEN FMN +
Sbjct: 8115892 KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQY 8116053
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,779,519,929
Number of Sequences: 1013581
Number of extensions: 25421635
Number of successful extensions: 144339
Number of sequences better than 1.0e-020: 16
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 57861642190
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)