TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 83 5e-043
emb|AX506835.1| Sequence 1530 from Patent WO0216655 83 5e-043
emb|AX651787.1| Sequence 640 from Patent WO03000898 83 5e-043
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 83 6e-043
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 83 6e-043
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 83 6e-043
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 83 6e-043
ref|NM_001036629.1| Arabidopsis thaliana ARF9 (AUXIN RESPON... 96 3e-032
ref|NM_118530.3| Arabidopsis thaliana ARF9 (AUXIN RESPONSE ... 96 3e-032
emb|BX828437.1|CNS0A2BW Arabidopsis thaliana Full-length cD... 96 3e-032
gb|AF082176.1|AF082176 Arabidopsis thaliana auxin response ... 96 3e-032
gb|AF344312.1| Arabidopsis thaliana clone C00029 (e) auxin ... 96 3e-032
gb|AF344313.1| Arabidopsis thaliana auxin response factor 4... 52 2e-031
gb|AY113977.1| Arabidopsis thaliana auxin response factor A... 52 2e-031
gb|BT015544.1| Arabidopsis thaliana At4g23980 mRNA sequence 96 4e-031
gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response ... 52 5e-031
gb|AY080832.1| Arabidopsis thaliana auxin response factor A... 52 8e-031
ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE ... 52 1e-030
gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, com... 75 1e-030
ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription ... 84 3e-029
gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mR... 84 3e-029
gb|AY059746.1| Arabidopsis thaliana auxin response factor A... 84 3e-029
emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cD... 84 3e-029
gb|AY091392.1| Arabidopsis thaliana putative auxin response... 84 3e-029
gb|AF334717.1| Arabidopsis thaliana auxin response factor A... 84 3e-029
ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 83 3e-028
ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 83 3e-028
ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPO... 83 3e-028
gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At... 83 3e-028
ref|NM_103164.2| Arabidopsis thaliana ARF21; transcription ... 92 2e-026
emb|BX820997.1|CNS0A8K9 Arabidopsis thaliana Full-length cD... 83 7e-026
ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 64 1e-025
gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R1... 64 1e-025
ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 64 1e-025
emb|CS165494.1| Sequence 2 from Patent WO2005085453 64 1e-025
ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 64 1e-025
dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding ... 64 1e-025
dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding ... 64 1e-025
dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding ... 64 1e-025
dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding ... 64 1e-025
dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding ... 64 1e-025
dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding ... 64 1e-025
gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10... 64 1e-025
gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5... 64 1e-025
emb|CS165547.1| Sequence 55 from Patent WO2005085453 64 1e-025
emb|CS165497.1| Sequence 5 from Patent WO2005085453 64 1e-025
emb|CS165548.1| Sequence 56 from Patent WO2005085453 64 1e-025
gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA... 64 1e-025
gb|AY669793.1| Arabidopsis thaliana clone C105348 (B) ARF13... 85 2e-025
ref|NM_103140.3| Arabidopsis thaliana ARF13; transcription ... 85 2e-025
ref|NM_103248.1| Arabidopsis thaliana ARF15; transcription ... 89 3e-025
gb|AY669795.1| Arabidopsis thaliana clone C00610 ARF20 (At1... 92 3e-025
ref|NM_103222.2| Arabidopsis thaliana ARF20; transcription ... 92 3e-025
gb|AY669796.1| Arabidopsis thaliana clone C105354 ARF22 (At... 91 4e-025
ref|NM_103162.2| Arabidopsis thaliana ARF22; transcription ... 91 4e-025
gb|AY669792.1| Arabidopsis thaliana clone C105347 ARF12 (At... 90 7e-025
ref|NM_103153.2| Arabidopsis thaliana ARF12; transcription ... 90 7e-025
ref|NM_103250.1| Arabidopsis thaliana ARF14; transcription ... 90 9e-025
ref|NM_104668.2| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 86 1e-023
gb|AY133723.1| Arabidopsis thaliana auxin response factor 1... 86 1e-023
ref|NM_179499.1| Arabidopsis thaliana ARF1 (AUXIN RESPONSE ... 86 1e-023
gb|U83245.1|ATU83245 Arabidopsis thaliana auxin response fa... 86 1e-023
ref|NM_001036131.1| Arabidopsis thaliana ARF1 (AUXIN RESPON... 86 1e-023
gb|BT002748.1| Arabidopsis thaliana clone C105458 auxin res... 86 1e-023
emb|AX507306.1| Sequence 2001 from Patent WO0216655 86 1e-023
gb|BU635530.1|BU635530 024G07 Infected Arabidopsis Leaf Ara... 86 1e-023
gb|AY680406.1| Arabidopsis thaliana ARF13 (At1g34170) mRNA,... 76 1e-022
ref|NM_001036062.1| Arabidopsis thaliana ARF13 AT1G34170 (A... 76 1e-022
gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 m... 75 9e-022
>gb|AF336917.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1827
Score = 82.6 bits (174), Expect(5) = 5e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 730 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 909
Query: 1615 S 1613
S
Sbjct: 910 S 912
Score = 64.3 bits (134), Expect(5) = 5e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1072 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1188
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -2
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1067 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 888
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 887 LKTLWVDMA*AT 852
Score = 51.9 bits (107), Expect(5) = 5e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 976 GMRFKARVESEDASERRSPGIISGISDLDPI 1068
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -2
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1328 S*PCKTLWNLNDSSKSVARIPSETGISG 1245
Score = 35.4 bits (71), Expect(5) = 5e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1246 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1332
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1124 ATMSSHLTKRHLHFEPGHL 1068
Score = 31.8 bits (63), Expect(5) = 5e-043
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2 / +1
Query: 1048 GSPRFSYRCSGFGESPRFQKVLQGQEVFHPY 956
G+ R ++ + FG+S F KVLQGQE Y
Sbjct: 1372 GARRGRFKGTEFGDSYGFHKVLQGQETVPAY 1464
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -2
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1448 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1335
>emb|AX506835.1| Sequence 1530 from Patent WO0216655
Length = 1827
Score = 82.6 bits (174), Expect(5) = 5e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 730 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 909
Query: 1615 S 1613
S
Sbjct: 910 S 912
Score = 64.3 bits (134), Expect(5) = 5e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1072 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1188
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -2
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1067 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 888
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 887 LKTLWVDMA*AT 852
Score = 51.9 bits (107), Expect(5) = 5e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 976 GMRFKARVESEDASERRSPGIISGISDLDPI 1068
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -2
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1328 S*PCKTLWNLNDSSKSVARIPSETGISG 1245
Score = 35.4 bits (71), Expect(5) = 5e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1246 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1332
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1124 ATMSSHLTKRHLHFEPGHL 1068
Score = 31.8 bits (63), Expect(5) = 5e-043
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2 / +1
Query: 1048 GSPRFSYRCSGFGESPRFQKVLQGQEVFHPY 956
G+ R ++ + FG+S F KVLQGQE Y
Sbjct: 1372 GARRGRFKGTEFGDSYGFHKVLQGQETVPAY 1464
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -2
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1448 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1335
>emb|AX651787.1| Sequence 640 from Patent WO03000898
Length = 1827
Score = 82.6 bits (174), Expect(5) = 5e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 730 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 909
Query: 1615 S 1613
S
Sbjct: 910 S 912
Score = 64.3 bits (134), Expect(5) = 5e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1072 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1188
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -2
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1067 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 888
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 887 LKTLWVDMA*AT 852
Score = 51.9 bits (107), Expect(5) = 5e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 976 GMRFKARVESEDASERRSPGIISGISDLDPI 1068
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -2
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1328 S*PCKTLWNLNDSSKSVARIPSETGISG 1245
Score = 35.4 bits (71), Expect(5) = 5e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1246 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1332
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1124 ATMSSHLTKRHLHFEPGHL 1068
Score = 31.8 bits (63), Expect(5) = 5e-043
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2 / +1
Query: 1048 GSPRFSYRCSGFGESPRFQKVLQGQEVFHPY 956
G+ R ++ + FG+S F KVLQGQE Y
Sbjct: 1372 GARRGRFKGTEFGDSYGFHKVLQGQETVPAY 1464
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -2
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1448 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1335
>gb|AY056365.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1858
Score = 82.6 bits (174), Expect(5) = 6e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 730 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 909
Query: 1615 S 1613
S
Sbjct: 910 S 912
Score = 64.3 bits (134), Expect(5) = 6e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1072 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1188
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -3
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1067 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 888
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 887 LKTLWVDMA*AT 852
Score = 51.9 bits (107), Expect(5) = 6e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 976 GMRFKARVESEDASERRSPGIISGISDLDPI 1068
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -3
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1328 S*PCKTLWNLNDSSKSVARIPSETGISG 1245
Score = 35.4 bits (71), Expect(5) = 6e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1246 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1332
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -3
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1124 ATMSSHLTKRHLHFEPGHL 1068
Score = 31.8 bits (63), Expect(5) = 6e-043
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2 / +1
Query: 1048 GSPRFSYRCSGFGESPRFQKVLQGQEVFHPY 956
G+ R ++ + FG+S F KVLQGQE Y
Sbjct: 1372 GARRGRFKGTEFGDSYGFHKVLQGQETVPAY 1464
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -3
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1448 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1335
>ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcription factor AT2G33860
(ETT) mRNA, complete cds
Length = 2160
Score = 82.6 bits (174), Expect(4) = 6e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 888 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 1067
Query: 1615 S 1613
S
Sbjct: 1068 S 1070
Score = 64.3 bits (134), Expect(4) = 6e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1230 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1346
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -3
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1225 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 1046
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 1045 LKTLWVDMA*AT 1010
Score = 51.9 bits (107), Expect(4) = 6e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 1134 GMRFKARVESEDASERRSPGIISGISDLDPI 1226
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -3
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1486 S*PCKTLWNLNDSSKSVARIPSETGISG 1403
Score = 35.4 bits (71), Expect(4) = 6e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +3
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1404 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1490
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -3
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1282 ATMSSHLTKRHLHFEPGHL 1226
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -3
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1606 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1493
>gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response transcription factor 3 (ARF3)
mRNA, complete cds
Length = 2124
Score = 82.6 bits (174), Expect(4) = 6e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 888 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 1067
Query: 1615 S 1613
S
Sbjct: 1068 S 1070
Score = 64.3 bits (134), Expect(4) = 6e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1230 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1346
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -3
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1225 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 1046
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 1045 LKTLWVDMA*AT 1010
Score = 51.9 bits (107), Expect(4) = 6e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 1134 GMRFKARVESEDASERRSPGIISGISDLDPI 1226
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -3
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1486 S*PCKTLWNLNDSSKSVARIPSETGISG 1403
Score = 35.4 bits (71), Expect(4) = 6e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +3
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1404 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1490
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -3
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1282 ATMSSHLTKRHLHFEPGHL 1226
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -3
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1606 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1493
>gb|AF360313.1| Arabidopsis thaliana auxin response transcription factor 3
(ETTIN/ARF3) (At2g33860) mRNA, complete cds
Length = 2114
Score = 82.6 bits (174), Expect(4) = 6e-043
Identities = 35/61 (57%), Positives = 45/61 (73%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
LFLRGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 828 LFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKA 1007
Query: 1615 S 1613
S
Sbjct: 1008 S 1010
Score = 64.3 bits (134), Expect(4) = 6e-043
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
W GSKW+CL+VRWDD V R+SPWEIE + S+S S
Sbjct: 1170 WPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNS 1286
Score = 64.3 bits (134), Expect(4) = 2e-021
Identities = 39/72 (54%), Positives = 43/72 (59%)
Frame = +3 / -2
Query: 1458 MGSASPIPAMIPVHLLSEASSLSYLTLNLEPAENG*LKLLINFENGIMNSDWLNLGL**M 1637
+GS S IP +IP LLS+ASS S L LNL P + G* NF GIM D L LGL* M
Sbjct: 1165 IGSKSLIPLIIPGDLLSDASSDSTLALNLIPMQKG*STTFKNFGAGIMKFDQLALGL*EM 986
Query: 1638 WNTLLVATACAT 1673
TL V A AT
Sbjct: 985 LKTLWVDMA*AT 950
Score = 51.9 bits (107), Expect(4) = 6e-043
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPM 1457
G RFK R ES+DASERR GII+GI D DP+
Sbjct: 1074 GMRFKARVESEDASERRSPGIISGISDLDPI 1166
Score = 37.7 bits (76), Expect(4) = 2e-021
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3 / -2
Query: 1203 S*PCKTLWNWADSAKSGRPLPFGTR*SG 1286
S*PCKTLWN DS+KS +P T SG
Sbjct: 1426 S*PCKTLWNLNDSSKSVARIPSETGISG 1343
Score = 35.4 bits (71), Expect(4) = 6e-043
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / +3
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQEL 1199
PD V G DF ES +F +VLQGQE+
Sbjct: 1344 PDIPVSEGIRATDFEESLRFQRVLQGQEI 1430
Score = 32.7 bits (65), Expect(4) = 2e-021
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 1404 STSSSHRTIKHFHFEPRHM 1460
+T SSH T +H HFEP H+
Sbjct: 1222 ATMSSHLTKRHLHFEPGHL 1166
Score = 25.8 bits (50), Expect(4) = 2e-021
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3 / -2
Query: 972 S*PCKTFWNLGDSPKPEQR*ENLGLPSGVLTPILGTPG 1085
S*PCKT W +SP L P+ +L PG
Sbjct: 1546 S*PCKTLWKP*ESPNSVPLKRPLLAPAPPSEQVLIKPG 1433
>ref|NM_001036629.1| Arabidopsis thaliana ARF9 (AUXIN RESPONSE FACTOR 9) AT4G23980 (ARF9)
transcript variant AT4G23980.2 mRNA, complete cds
Length = 2835
Score = 95.9 bits (203), Expect(2) = 3e-032
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RFK+R+E +D+ ERR +G + G+ D P W+ SKW+CL V WD+ +PN++SPWE
Sbjct: 1235 GMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDEPASISRPNKVSPWE 1414
Query: 1369 IE 1364
IE
Sbjct: 1415 IE 1420
Score = 66.6 bits (139), Expect(2) = 3e-032
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA ++ + + +LG L HA TK++F +YY PR
Sbjct: 995 VFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT 1174
Query: 1615 SQ 1610
SQ
Sbjct: 1175 SQ 1180
>ref|NM_118530.3| Arabidopsis thaliana ARF9 (AUXIN RESPONSE FACTOR 9); transcription
factor AT4G23980 (ARF9) transcript variant AT4G23980.1
mRNA, complete cds
Length = 2479
Score = 95.9 bits (203), Expect(2) = 3e-032
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RFK+R+E +D+ ERR +G + G+ D P W+ SKW+CL V WD+ +PN++SPWE
Sbjct: 1136 GMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDEPASISRPNKVSPWE 1315
Query: 1369 IE 1364
IE
Sbjct: 1316 IE 1321
Score = 66.6 bits (139), Expect(2) = 3e-032
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA ++ + + +LG L HA TK++F +YY PR
Sbjct: 896 VFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT 1075
Query: 1615 SQ 1610
SQ
Sbjct: 1076 SQ 1081
>emb|BX828437.1|CNS0A2BW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH8ZD05 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 2473
Score = 95.9 bits (203), Expect(2) = 3e-032
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RFK+R+E +D+ ERR +G + G+ D P W+ SKW+CL V WD+ +PN++SPWE
Sbjct: 1136 GMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDEPASISRPNKVSPWE 1315
Query: 1369 IE 1364
IE
Sbjct: 1316 IE 1321
Score = 66.6 bits (139), Expect(2) = 3e-032
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA ++ + + +LG L HA TK++F +YY PR
Sbjct: 896 VFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT 1075
Query: 1615 SQ 1610
SQ
Sbjct: 1076 SQ 1081
>gb|AF082176.1|AF082176 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete
cds
Length = 2292
Score = 95.9 bits (203), Expect(2) = 3e-032
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RFK+R+E +D+ ERR +G + G+ D P W+ SKW+CL V WD+ +PN++SPWE
Sbjct: 1128 GMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDEPASISRPNKVSPWE 1307
Query: 1369 IE 1364
IE
Sbjct: 1308 IE 1313
Score = 66.6 bits (139), Expect(2) = 3e-032
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA ++ + + +LG L HA TK++F +YY PR
Sbjct: 888 VFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT 1067
Query: 1615 SQ 1610
SQ
Sbjct: 1068 SQ 1073
>gb|AF344312.1| Arabidopsis thaliana clone C00029 (e) auxin response factor 9
(At4g23980) mRNA, complete cds
Length = 1917
Score = 95.9 bits (203), Expect(2) = 3e-032
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RFK+R+E +D+ ERR +G + G+ D P W+ SKW+CL V WD+ +PN++SPWE
Sbjct: 841 GMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDEPASISRPNKVSPWE 1020
Query: 1369 IE 1364
IE
Sbjct: 1021 IE 1026
Score = 66.6 bits (139), Expect(2) = 3e-032
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA ++ + + +LG L HA TK++F +YY PR
Sbjct: 601 VFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT 780
Query: 1615 SQ 1610
SQ
Sbjct: 781 SQ 786
>gb|AF344313.1| Arabidopsis thaliana auxin response factor 4 (At5g60450) mRNA,
complete cds
Length = 2367
Score = 51.9 bits (107), Expect(7) = 2e-031
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSV 1349
W SKW+CL+VRWD+ R+SPWEI+ + S+
Sbjct: 1123 WPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSL 1230
Score = 51.0 bits (105), Expect(7) = 2e-031
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G+RF++R+E DD+ ERRC G++ G+ D DP
Sbjct: 1027 GTRFRMRFEMDDSPERRCAGVVTGVCDLDP 1116
Score = 40.9 bits (83), Expect(7) = 2e-031
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNG 1727
LFLR + GELRLG+RRAA+ +NG
Sbjct: 784 LFLRDEGGELRLGIRRAARPRNG 852
Score = 36.3 bits (73), Expect(7) = 2e-031
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = -2 / +1
Query: 1672 VAHAVATKSVFHIYYNPR 1619
VA+AV+TKS+FH++Y+PR
Sbjct: 904 VANAVSTKSMFHVFYSPR 957
Score = 29.5 bits (58), Expect(7) = 2e-031
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +1
Query: 1024 CSGFGESPRFQKVLQGQEV 968
CSG + RF +VLQGQE+
Sbjct: 1540 CSGVMDLDRFPRVLQGQEI 1596
Score = 28.6 bits (56), Expect(7) = 2e-031
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQELLG 1193
P + G DF ES + KVLQGQE +G
Sbjct: 1300 PGNPITKRGGFLDFEESVRPSKVLQGQENIG 1392
Score = 26.3 bits (51), Expect(7) = 2e-031
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / +1
Query: 556 SKNSCKIFGISLTEKVPAMK 497
+ + CK+FG SL + PA K
Sbjct: 1915 ASSGCKLFGFSLPVETPASK 1974
>gb|AY113977.1| Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA,
complete cds
Length = 2398
Score = 51.9 bits (107), Expect(7) = 2e-031
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSV 1349
W SKW+CL+VRWD+ R+SPWEI+ + S+
Sbjct: 1123 WPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSL 1230
Score = 51.0 bits (105), Expect(7) = 2e-031
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G+RF++R+E DD+ ERRC G++ G+ D DP
Sbjct: 1027 GTRFRMRFEMDDSPERRCAGVVTGVCDLDP 1116
Score = 40.9 bits (83), Expect(7) = 2e-031
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNG 1727
LFLR + GELRLG+RRAA+ +NG
Sbjct: 784 LFLRDEGGELRLGIRRAARPRNG 852
Score = 36.3 bits (73), Expect(7) = 2e-031
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = -2 / +1
Query: 1672 VAHAVATKSVFHIYYNPR 1619
VA+AV+TKS+FH++Y+PR
Sbjct: 904 VANAVSTKSMFHVFYSPR 957
Score = 29.5 bits (58), Expect(7) = 2e-031
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +1
Query: 1024 CSGFGESPRFQKVLQGQEV 968
CSG + RF +VLQGQE+
Sbjct: 1540 CSGVMDLDRFPRVLQGQEI 1596
Score = 28.6 bits (56), Expect(7) = 2e-031
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQELLG 1193
P + G DF ES + KVLQGQE +G
Sbjct: 1300 PGNPITKRGGFLDFEESVRPSKVLQGQENIG 1392
Score = 26.3 bits (51), Expect(7) = 2e-031
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / +1
Query: 556 SKNSCKIFGISLTEKVPAMK 497
+ + CK+FG SL + PA K
Sbjct: 1915 ASSGCKLFGFSLPVETPASK 1974
>gb|BT015544.1| Arabidopsis thaliana At4g23980 mRNA sequence
Length = 1909
Score = 95.9 bits (203), Expect(2) = 4e-031
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G RFK+R+E +D+ ERR +G + G+ D P W+ SKW+CL V WD+ +PN++SPWE
Sbjct: 839 GMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDEPASISRPNKVSPWE 1018
Query: 1369 IE 1364
IE
Sbjct: 1019 IE 1024
Score = 62.9 bits (131), Expect(2) = 4e-031
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLR +NGELR+GVRRA ++ + + +LG L HA TK++F +YY PR
Sbjct: 599 VFLREENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRT 778
Query: 1615 SQ 1610
SQ
Sbjct: 779 SQ 784
>gb|AF013466.1|AF013466 Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete
cds
Length = 2675
Score = 51.9 bits (107), Expect(7) = 5e-031
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2 / +2
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSV 1349
W SKW+CL+VRWD+ R+SPWEI+ + S+
Sbjct: 1178 WPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSL 1285
Score = 51.0 bits (105), Expect(7) = 5e-031
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G+RF++R+E DD+ ERRC G++ G+ D DP
Sbjct: 1082 GTRFRMRFEMDDSPERRCAGVVTGVCDLDP 1171
Score = 40.9 bits (83), Expect(7) = 5e-031
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNG 1727
LFLR + GELRLG+RRAA+ +NG
Sbjct: 839 LFLRDEGGELRLGIRRAARPRNG 907
Score = 36.3 bits (73), Expect(7) = 5e-031
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = -2 / +2
Query: 1672 VAHAVATKSVFHIYYNPR 1619
VA+AV+TKS+FH++Y+PR
Sbjct: 959 VANAVSTKSMFHVFYSPR 1012
Score = 29.5 bits (58), Expect(7) = 5e-031
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 1024 CSGFGESPRFQKVLQGQEV 968
CSG + RF +VLQGQE+
Sbjct: 1595 CSGVMDLDRFPRVLQGQEI 1651
Score = 28.6 bits (56), Expect(7) = 5e-031
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2 / +2
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQELLG 1193
P + G DF ES + KVLQGQE +G
Sbjct: 1355 PGNPITKRGGFLDFEESVRPSKVLQGQENIG 1447
Score = 26.3 bits (51), Expect(7) = 5e-031
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / +2
Query: 556 SKNSCKIFGISLTEKVPAMK 497
+ + CK+FG SL + PA K
Sbjct: 1970 ASSGCKLFGFSLPVETPASK 2029
>gb|AY080832.1| Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA,
complete cds
Length = 2974
Score = 51.9 bits (107), Expect(7) = 8e-031
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSV 1349
W SKW+CL+VRWD+ R+SPWEI+ + S+
Sbjct: 1480 WPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSL 1587
Score = 51.0 bits (105), Expect(7) = 8e-031
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G+RF++R+E DD+ ERRC G++ G+ D DP
Sbjct: 1384 GTRFRMRFEMDDSPERRCAGVVTGVCDLDP 1473
Score = 40.9 bits (83), Expect(7) = 8e-031
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNG 1727
LFLR + GELRLG+RRAA+ +NG
Sbjct: 1141 LFLRDEGGELRLGIRRAARPRNG 1209
Score = 36.3 bits (73), Expect(7) = 8e-031
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = -2 / +1
Query: 1672 VAHAVATKSVFHIYYNPR 1619
VA+AV+TKS+FH++Y+PR
Sbjct: 1261 VANAVSTKSMFHVFYSPR 1314
Score = 29.5 bits (58), Expect(7) = 8e-031
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +1
Query: 1024 CSGFGESPRFQKVLQGQEV 968
CSG + RF +VLQGQE+
Sbjct: 1897 CSGVMDLDRFPRVLQGQEI 1953
Score = 28.6 bits (56), Expect(7) = 8e-031
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2 / +1
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQELLG 1193
P + G DF ES + KVLQGQE +G
Sbjct: 1657 PGNPITKRGGFLDFEESVRPSKVLQGQENIG 1749
Score = 26.3 bits (51), Expect(7) = 8e-031
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / +1
Query: 556 SKNSCKIFGISLTEKVPAMK 497
+ + CK+FG SL + PA K
Sbjct: 2272 ASSGCKLFGFSLPVETPASK 2331
>ref|NM_125438.2| Arabidopsis thaliana ARF4 (AUXIN RESPONSE FACTOR 4); transcription
factor AT5G60450 (ARF4) mRNA, complete cds
Length = 3113
Score = 51.9 bits (107), Expect(7) = 1e-030
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2 / +2
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIELTSSV 1349
W SKW+CL+VRWD+ R+SPWEI+ + S+
Sbjct: 1634 WPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSL 1741
Score = 51.0 bits (105), Expect(7) = 1e-030
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G+RF++R+E DD+ ERRC G++ G+ D DP
Sbjct: 1538 GTRFRMRFEMDDSPERRCAGVVTGVCDLDP 1627
Score = 40.9 bits (83), Expect(7) = 1e-030
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNG 1727
LFLR + GELRLG+RRAA+ +NG
Sbjct: 1295 LFLRDEGGELRLGIRRAARPRNG 1363
Score = 36.3 bits (73), Expect(7) = 1e-030
Identities = 12/18 (66%), Positives = 18/18 (100%)
Frame = -2 / +2
Query: 1672 VAHAVATKSVFHIYYNPR 1619
VA+AV+TKS+FH++Y+PR
Sbjct: 1415 VANAVSTKSMFHVFYSPR 1468
Score = 29.5 bits (58), Expect(7) = 1e-030
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2 / +2
Query: 1024 CSGFGESPRFQKVLQGQEV 968
CSG + RF +VLQGQE+
Sbjct: 2051 CSGVMDLDRFPRVLQGQEI 2107
Score = 28.6 bits (56), Expect(7) = 1e-030
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2 / +2
Query: 1285 PDYLVPNGSGRPDFAESAQFHKVLQGQELLG 1193
P + G DF ES + KVLQGQE +G
Sbjct: 1811 PGNPITKRGGFLDFEESVRPSKVLQGQENIG 1903
Score = 26.3 bits (51), Expect(7) = 1e-030
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2 / +2
Query: 556 SKNSCKIFGISLTEKVPAMK 497
+ + CK+FG SL + PA K
Sbjct: 2426 ASSGCKLFGFSLPVETPASK 2485
>gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, complete cds
Length = 4054
Score = 74.8 bits (157), Expect(7) = 1e-030
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = -2 / +2
Query: 1786 RGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPR 1619
RGD+G+LRLGVRRA+Q++ +A A YNQ N + VAHA++T SVF I YNP+
Sbjct: 2045 RGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPK 2212
Score = 41.4 bits (84), Expect(7) = 1e-030
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -2 / +3
Query: 1432 LMVRWDDDVDFRQPNRISPWEIELTSSVSGS 1340
+ VRWDD V R+SPWEIE + S+S S
Sbjct: 2805 IQVRWDDIVANGHQQRVSPWEIEPSGSISNS 2897
Score = 32.7 bits (65), Expect(7) = 1e-030
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERR 1499
G RFK R ES+DASERR
Sbjct: 2470 GMRFKARVESEDASERR 2520
Score = 31.8 bits (63), Expect(7) = 1e-030
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2 / +1
Query: 1048 GSPRFSYRCSGFGESPRFQKVLQGQEVFHPY 956
G+ R ++ + FG+S F KVLQGQE Y
Sbjct: 3166 GARRGRFKGTEFGDSYGFHKVLQGQETVPAY 3258
Score = 31.8 bits (63), Expect(7) = 1e-030
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2 / +1
Query: 1276 LVPNGSGRPDFAESAQFHKVLQGQEL 1199
++ G DF ES +F +VLQGQE+
Sbjct: 3049 IIAEGIRATDFEESLRFQRVLQGQEI 3126
Score = 29.9 bits (59), Expect(7) = 1e-030
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWD 1415
W GSKW+CL+V ++
Sbjct: 2661 WPGSKWRCLLVSYE 2702
Score = 24.4 bits (47), Expect(7) = 1e-030
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 1501 RCTGIIAGIGDADPM 1457
R GII+GI D DP+
Sbjct: 2613 RSPGIISGISDLDPI 2657
>ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription factor AT3G61830 (ARF18)
mRNA, complete cds
Length = 2347
Score = 84.0 bits (177), Expect(2) = 3e-029
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G+RF++R+E +++ ER TG I G GD W SKW+ L V+WD+ ++P+++SPWE
Sbjct: 1159 GTRFRMRFEGEESPERIFTGTIVGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 1338
Query: 1369 IE 1364
IE
Sbjct: 1339 IE 1344
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NG+LR+GVRR A+ ++ + +Q +LG L +HAV T ++F ++Y PR+
Sbjct: 919 VFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI 1098
Query: 1615 SQ 1610
SQ
Sbjct: 1099 SQ 1104
>gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds
Length = 2331
Score = 84.0 bits (177), Expect(2) = 3e-029
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G+RF++R+E +++ ER TG I G GD W SKW+ L V+WD+ ++P+++SPWE
Sbjct: 1162 GTRFRMRFEGEESPERIFTGTIVGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 1341
Query: 1369 IE 1364
IE
Sbjct: 1342 IE 1347
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NG+LR+GVRR A+ ++ + +Q +LG L +HAV T ++F ++Y PR+
Sbjct: 922 VFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI 1101
Query: 1615 SQ 1610
SQ
Sbjct: 1102 SQ 1107
>gb|AY059746.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 2307
Score = 84.0 bits (177), Expect(2) = 3e-029
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G+RF++R+E +++ ER TG I G GD W SKW+ L V+WD+ ++P+++SPWE
Sbjct: 1097 GTRFRMRFEGEESPERIFTGTIVGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 1276
Query: 1369 IE 1364
IE
Sbjct: 1277 IE 1282
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NG+LR+GVRR A+ ++ + +Q +LG L +HAV T ++F ++Y PR+
Sbjct: 857 VFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI 1036
Query: 1615 SQ 1610
SQ
Sbjct: 1037 SQ 1042
>emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS50ZC04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2115
Score = 84.0 bits (177), Expect(2) = 3e-029
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G+RF++R+E +++ ER TG I G GD W SKW+ L V+WD+ ++P+++SPWE
Sbjct: 994 GTRFRMRFEGEESPERIFTGTIVGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 1173
Query: 1369 IE 1364
IE
Sbjct: 1174 IE 1179
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NG+LR+GVRR A+ ++ + +Q +LG L +HAV T ++F ++Y PR+
Sbjct: 754 VFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI 933
Query: 1615 SQ 1610
SQ
Sbjct: 934 SQ 939
>gb|AY091392.1| Arabidopsis thaliana putative auxin response factor protein
(At3g61830) mRNA, complete cds
Length = 1840
Score = 84.0 bits (177), Expect(2) = 3e-029
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G+RF++R+E +++ ER TG I G GD W SKW+ L V+WD+ ++P+++SPWE
Sbjct: 877 GTRFRMRFEGEESPERIFTGTIVGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 1056
Query: 1369 IE 1364
IE
Sbjct: 1057 IE 1062
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NG+LR+GVRR A+ ++ + +Q +LG L +HAV T ++F ++Y PR+
Sbjct: 637 VFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI 816
Query: 1615 SQ 1610
SQ
Sbjct: 817 SQ 822
>gb|AF334717.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 1809
Score = 84.0 bits (177), Expect(2) = 3e-029
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G+RF++R+E +++ ER TG I G GD W SKW+ L V+WD+ ++P+++SPWE
Sbjct: 877 GTRFRMRFEGEESPERIFTGTIVGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 1056
Query: 1369 IE 1364
IE
Sbjct: 1057 IE 1062
Score = 68.4 bits (143), Expect(2) = 3e-029
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NG+LR+GVRR A+ ++ + +Q +LG L +HAV T ++F ++Y PR+
Sbjct: 637 VFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRI 816
Query: 1615 SQ 1610
SQ
Sbjct: 817 SQ 822
>ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11); transcription
factor AT2G46530 (ARF11) transcript variant AT2G46530.1
mRNA, complete cds
Length = 2425
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G R+++R+E +++ ER TG I G GD W SKW+ L ++WD+ ++PN++SPWE
Sbjct: 1182 GMRYRMRFEGEESPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 1361
Query: 1369 IE 1364
IE
Sbjct: 1362 IE 1367
Score = 66.1 bits (138), Expect(2) = 3e-028
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+ G+LR+GVRR A+ ++ + +Q LG L +HAV T ++F ++Y PR+
Sbjct: 942 VFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI 1121
Query: 1615 SQ 1610
SQ
Sbjct: 1122 SQ 1127
>ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11); transcription
factor AT2G46530 (ARF11) transcript variant AT2G46530.2
mRNA, complete cds
Length = 2413
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G R+++R+E +++ ER TG I G GD W SKW+ L ++WD+ ++PN++SPWE
Sbjct: 1170 GMRYRMRFEGEESPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 1349
Query: 1369 IE 1364
IE
Sbjct: 1350 IE 1355
Score = 66.1 bits (138), Expect(2) = 3e-028
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+ G+LR+GVRR A+ ++ + +Q LG L +HAV T ++F ++Y PR+
Sbjct: 930 VFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI 1109
Query: 1615 SQ 1610
SQ
Sbjct: 1110 SQ 1115
>ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11); transcription
factor AT2G46530 (ARF11) transcript variant AT2G46530.3
mRNA, complete cds
Length = 2171
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G R+++R+E +++ ER TG I G GD W SKW+ L ++WD+ ++PN++SPWE
Sbjct: 928 GMRYRMRFEGEESPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 1107
Query: 1369 IE 1364
IE
Sbjct: 1108 IE 1113
Score = 66.1 bits (138), Expect(2) = 3e-028
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+ G+LR+GVRR A+ ++ + +Q LG L +HAV T ++F ++Y PR+
Sbjct: 688 VFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI 867
Query: 1615 SQ 1610
SQ
Sbjct: 868 SQ 873
>gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At2g46530) mRNA, complete
cds
Length = 1900
Score = 83.1 bits (175), Expect(2) = 3e-028
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G R+++R+E +++ ER TG I G GD W SKW+ L ++WD+ ++PN++SPWE
Sbjct: 928 GMRYRMRFEGEESPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 1107
Query: 1369 IE 1364
IE
Sbjct: 1108 IE 1113
Score = 66.1 bits (138), Expect(2) = 3e-028
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+ G+LR+GVRR A+ ++ + +Q LG L +HAV T ++F ++Y PR+
Sbjct: 688 VFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI 867
Query: 1615 SQ 1610
SQ
Sbjct: 868 SQ 873
>ref|NM_103164.2| Arabidopsis thaliana ARF21; transcription factor AT1G34410 (ARF21)
mRNA, complete cds
Length = 1821
Score = 92.3 bits (195), Expect(2) = 2e-026
Identities = 33/62 (53%), Positives = 44/62 (70%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
GSRF +R+E DD SERR G I G+ D P W+ S+W+ L V+WD+ F +PN++SPWE
Sbjct: 871 GSRFTMRFEGDDFSERRYFGTIIGVSDFSPHWKCSEWRSLEVQWDEFASFSRPNKVSPWE 1050
Query: 1369 IE 1364
IE
Sbjct: 1051 IE 1056
Score = 51.0 bits (105), Expect(2) = 2e-026
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+F+RG+ GELR+G+RRA + + C G + + HA + +F + Y PR
Sbjct: 631 VFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCIFIVVYKPRS 810
Query: 1615 SQ 1610
SQ
Sbjct: 811 SQ 816
>emb|BX820997.1|CNS0A8K9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH8ZD01 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1552
Score = 83.1 bits (175), Expect(2) = 7e-026
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
G R+++R+E +++ ER TG I G GD W SKW+ L ++WD+ ++PN++SPWE
Sbjct: 308 GMRYRMRFEGEESPERIFTGTIIGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 487
Query: 1369 IE 1364
IE
Sbjct: 488 IE 493
Score = 57.9 bits (120), Expect(2) = 7e-026
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = -2 / +2
Query: 1789 LRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRLSQ 1610
L G G+LR+GVRR A+ ++ + +Q LG L +HAV T ++F ++Y PR+SQ
Sbjct: 74 LEG*TGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRISQ 253
>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.1
mRNA, complete cds
Length = 3513
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1246 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1425
Query: 1615 S 1613
S
Sbjct: 1426 S 1428
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1588 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1680
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1492 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1581
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
factor (At5g62000) mRNA, complete cds
Length = 3498
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1246 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1425
Query: 1615 S 1613
S
Sbjct: 1426 S 1428
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1588 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1680
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1492 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1581
>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000 (ARF2)
transcript variant AT5G62000.3 mRNA, complete cds
Length = 3387
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1120 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1299
Query: 1615 S 1613
S
Sbjct: 1300 S 1302
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1462 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1554
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1366 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1455
>emb|CS165494.1| Sequence 2 from Patent WO2005085453
Length = 3384
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1120 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1299
Query: 1615 S 1613
S
Sbjct: 1300 S 1302
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1462 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1554
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1366 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1455
>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.2
mRNA, complete cds
Length = 3384
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1120 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1299
Query: 1615 S 1613
S
Sbjct: 1300 S 1302
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1462 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1554
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1366 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1455
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-31-F22
Length = 3335
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1054 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1233
Query: 1615 S 1613
S
Sbjct: 1234 S 1236
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1396 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1488
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1300 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1389
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-07-O11
Length = 3317
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1083 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1262
Query: 1615 S 1613
S
Sbjct: 1263 S 1265
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1425 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1517
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1329 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1418
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-09-L23
Length = 3317
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1083 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1262
Query: 1615 S 1613
S
Sbjct: 1263 S 1265
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1425 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1517
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1329 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1418
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-16-M02
Length = 3317
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1083 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1262
Query: 1615 S 1613
S
Sbjct: 1263 S 1265
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1425 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1517
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1329 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1418
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-18-M11
Length = 3316
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1035 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1214
Query: 1615 S 1613
S
Sbjct: 1215 S 1217
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1377 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1469
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1281 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1370
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-19-K22
Length = 3275
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1033 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1212
Query: 1615 S 1613
S
Sbjct: 1213 S 1215
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1375 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1467
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1279 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1368
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
Length = 3171
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +2
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 1085 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 1264
Query: 1615 S 1613
S
Sbjct: 1265 S 1267
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +2
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1427 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1519
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +2
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 1331 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1420
>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete
cds
Length = 2772
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 745 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 924
Query: 1615 S 1613
S
Sbjct: 925 S 927
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1087 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1179
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 991 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1080
>emb|CS165547.1| Sequence 55 from Patent WO2005085453
Length = 2580
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 745 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 924
Query: 1615 S 1613
S
Sbjct: 925 S 927
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1087 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1179
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 991 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1080
>emb|CS165497.1| Sequence 5 from Patent WO2005085453
Length = 2576
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 741 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 920
Query: 1615 S 1613
S
Sbjct: 921 S 923
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1083 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1175
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 987 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1076
>emb|CS165548.1| Sequence 56 from Patent WO2005085453
Length = 2576
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +3
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 741 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 920
Query: 1615 S 1613
S
Sbjct: 921 S 923
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +3
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1083 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1175
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +3
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 987 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1076
>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds
Length = 2037
Score = 64.3 bits (134), Expect(3) = 1e-025
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+FLRG+NGELR+GVRRA + + + + +LG L HA++T ++F +YY PR
Sbjct: 745 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRT 924
Query: 1615 S 1613
S
Sbjct: 925 S 927
Score = 49.6 bits (102), Expect(3) = 1e-025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = -2 / +1
Query: 1456 WRGSKWKCLMVRWDDDVDFRQPNRISPWEIE 1364
W SKW+ L VRWD+ +P+R+SPW++E
Sbjct: 1087 WPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 1179
Score = 43.7 bits (89), Expect(3) = 1e-025
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADP 1460
G RFK+R+E ++A E+R TG I GI ++DP
Sbjct: 991 GMRFKMRFEGEEAPEQRFTGTIVGIEESDP 1080
>gb|AY669793.1| Arabidopsis thaliana clone C105348 (B) ARF13 (At1g34170) mRNA,
complete cds
Length = 1935
Score = 85.4 bits (180), Expect(2) = 2e-025
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
GSRF++++E D SE+R G I G+ D P W+ S+W+ L V+WD+ F +PN++SPW+
Sbjct: 871 GSRFRMQFEGKDFSEKRYDGTIIGVNDMSPHWKDSEWRSLKVQWDELSPFLRPNQVSPWD 1050
Query: 1369 IE 1364
IE
Sbjct: 1051 IE 1056
Score = 54.2 bits (112), Expect(2) = 2e-025
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+ LRG+NGELR G+RRA + + C G + +V +A TK +F++ Y P
Sbjct: 631 VLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPSS 810
Query: 1615 SQ 1610
SQ
Sbjct: 811 SQ 816
>ref|NM_103140.3| Arabidopsis thaliana ARF13; transcription factor AT1G34170 (ARF13)
transcript variant AT1G34170.1 mRNA, complete cds
Length = 1935
Score = 85.4 bits (180), Expect(2) = 2e-025
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = -2 / +1
Query: 1549 GSRFKVRYESDDASERRCTGIIAGIGDADPMWRGSKWKCLMVRWDDDVDFRQPNRISPWE 1370
GSRF++++E D SE+R G I G+ D P W+ S+W+ L V+WD+ F +PN++SPW+
Sbjct: 871 GSRFRMQFEGKDFSEKRYDGTIIGVNDMSPHWKDSEWRSLKVQWDELSPFLRPNQVSPWD 1050
Query: 1369 IE 1364
IE
Sbjct: 1051 IE 1056
Score = 54.2 bits (112), Expect(2) = 2e-025
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = -2 / +1
Query: 1795 LFLRGDNGELRLGVRRAAQLKNGSAFPALYNQCSNLGSLPNVAHAVATKSVFHIYYNPRL 1616
+ LRG+NGELR G+RRA + + C G + +V +A TK +F++ Y P
Sbjct: 631 VLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPSS 810
Query: 1615 SQ 1610
SQ
Sbjct: 811 SQ 816
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,029,922,634
Number of Sequences: 1013581
Number of extensions: 62341501
Number of successful extensions: 264385
Number of sequences better than 1.0e-020: 69
length of database: 302,980,290
effective HSP length: 58
effective length of database: 244,192,592
effective search space used: 131863999680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)