TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV533964.1|AV533964 AV533964 Arabidopsis thaliana flower... 165 1e-039
gb|AI995871.1|AI995871 701548981 A. thaliana, Columbia Col-... 163 5e-039
gb|AU227221.1|AU227221 AU227221 RAFL14 Arabidopsis thaliana... 163 5e-039
gb|AU239225.1|AU239225 AU239225 RAFL19 Arabidopsis thaliana... 163 5e-039
gb|CK118859.1|CK118859 215l17.p1 AtM1 Arabidopsis thaliana ... 163 5e-039
gb|AY084808.1| Arabidopsis thaliana clone 11842 mRNA, compl... 163 5e-039
emb|BX818319.1|CNS0AE6C Arabidopsis thaliana Full-length cD... 163 5e-039
dbj|AK118363.1| Arabidopsis thaliana mRNA for (AY084808) RN... 163 5e-039
ref|NM_179309.2| Arabidopsis thaliana DNA-directed RNA poly... 163 5e-039
gb|BP583950.1|BP583950 BP583950 RAFL14 Arabidopsis thaliana... 158 2e-037
ref|NM_104852.1| Arabidopsis thaliana DNA-directed RNA poly... 156 4e-037
gb|AU230508.1|AU230508 AU230508 RAFL19 Arabidopsis thaliana... 120 2e-032
gb|BP607947.1|BP607947 BP607947 RAFL16 Arabidopsis thaliana... 84 2e-032
gb|BP812614.1|BP812614 BP812614 RAFL19 Arabidopsis thaliana... 133 5e-030
gb|BP562809.2|BP562809 BP562809 RAFL14 Arabidopsis thaliana... 114 3e-024
gb|BP596063.1|BP596063 BP596063 RAFL15 Arabidopsis thaliana... 109 1e-022
gb|BP578138.1|BP578138 BP578138 RAFL14 Arabidopsis thaliana... 74 2e-022
gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis tha... 75 5e-022
gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BA... 73 3e-021
>gb|AV533964.1|AV533964 AV533964 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB071c07F 3', mRNA sequence
Length = 393
Score = 165 bits (355), Expect = 1e-039
Identities = 66/73 (90%), Positives = 70/73 (95%)
Frame = -3 / -3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 379 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 200
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++TS*
Sbjct: 199 LNYNTLEKSDTS* 161
>gb|AI995871.1|AI995871 701548981 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701548981, mRNA sequence
Length = 418
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / -2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 348 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 169
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 168 LNYNTLEKSDNS* 130
>gb|AU227221.1|AU227221 AU227221 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-88-K22 3',
mRNA sequence
Length = 423
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / -2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 383 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 204
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 203 LNYNTLEKSDNS* 165
>gb|AU239225.1|AU239225 AU239225 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-A21 5',
mRNA sequence
Length = 466
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 81 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 260
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 261 LNYNTLEKSDNS* 299
>gb|CK118859.1|CK118859 215l17.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011L17215
5-PRIME, mRNA sequence
Length = 394
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 43 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 222
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 223 LNYNTLEKSDNS* 261
>gb|AY084808.1| Arabidopsis thaliana clone 11842 mRNA, complete sequence
Length = 482
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 119 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 298
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 299 LNYNTLEKSDNS* 337
>emb|BX818319.1|CNS0AE6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL72ZE06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 514
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 71 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 250
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 251 LNYNTLEKSDNS* 289
>dbj|AK118363.1| Arabidopsis thaliana mRNA for (AY084808) RNA polymerase II subunit
(hsRPB10), putative [Arabidopsis thaliana], complete
cds, clone: RAFL19-63-A21
Length = 471
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 81 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 260
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 261 LNYNTLEKSDNS* 299
>ref|NM_179309.2| Arabidopsis thaliana DNA-directed RNA polymerase AT1G11475 mRNA,
complete cds
Length = 562
Score = 163 bits (350), Expect = 5e-039
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RYCCRRMLMTHVDLIEKL
Sbjct: 119 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKL 298
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 299 LNYNTLEKSDNS* 337
>gb|BP583950.1|BP583950 BP583950 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-44-D05 3',
mRNA sequence
Length = 425
Score = 158 bits (339), Expect = 2e-037
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = -3 / -1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RY CRRMLMTHVDLIEKL
Sbjct: 383 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYFCRRMLMTHVDLIEKL 204
Query: 330 LNYNTLEKTETS* 292
LNYNTLEK++ S*
Sbjct: 203 LNYNTLEKSDNS* 165
>ref|NM_104852.1| Arabidopsis thaliana DNA-directed RNA polymerase AT1G61700 mRNA,
complete cds
Length = 216
Score = 156 bits (336), Expect = 4e-037
Identities = 61/72 (84%), Positives = 68/72 (94%)
Frame = -3 / +1
Query: 507 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 328
MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 180
Query: 327 NYNTLEKTETS* 292
NYNT+EK++ +*
Sbjct: 181 NYNTMEKSDPN* 216
>gb|AU230508.1|AU230508 AU230508 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-A21 3',
mRNA sequence
Length = 416
Score = 120 bits (257), Expect(2) = 2e-032
Identities = 48/57 (84%), Positives = 53/57 (92%)
Frame = -3 / -3
Query: 462 NKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
NKWD YLDLLQ DY+EG+ALDAL+L RYCCRRMLMTHVDLIEKLLNYNTLEK++ S*
Sbjct: 345 NKWDQYLDLLQLDYTEGNALDALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS* 175
Score = 40.5 bits (82), Expect(2) = 2e-032
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 510 KMIIPVRCFTCGKVI 466
KMIIPVRCFTCGKVI
Sbjct: 392 KMIIPVRCFTCGKVI 348
>gb|BP607947.1|BP607947 BP607947 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-M24 3',
mRNA sequence
Length = 411
Score = 84.0 bits (177), Expect(2) = 2e-032
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = -3 / -3
Query: 411 DALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
DAL+AL+L RYCCRRMLMTHVDLIEKLLNYNTLEK++ S*
Sbjct: 280 DALNALQLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS* 161
Score = 77.1 bits (162), Expect(2) = 2e-032
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = -3 / -1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDAL 403
KMIIPVRCFTCGKVIGNKWD YLDL Q DY+EG L
Sbjct: 378 KMIIPVRCFTCGKVIGNKWDQYLDLHQLDYTEGTHL 271
>gb|BP812614.1|BP812614 BP812614 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-O13 5',
mRNA sequence
Length = 403
Score = 133 bits (285), Expect = 5e-030
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = -3 / +3
Query: 492 RCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTL 313
R FTCGKVIGNKWD YLDLLQ DY+EGDALDAL+L RY RRM+MTHVDLIEKLLNYNTL
Sbjct: 99 RWFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYWWRRMVMTHVDLIEKLLNYNTL 278
Query: 312 EKTETS* 292
EK++ S*
Sbjct: 279 EKSDNS* 299
>gb|BP562809.2|BP562809 BP562809 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-88-K22 5',
mRNA sequence
Length = 203
Score = 114 bits (243), Expect = 3e-024
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRML 361
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGD LDAL L RYCCRRML
Sbjct: 54 KMIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDXLDALXLVRYCCRRML 203
>gb|BP596063.1|BP596063 BP596063 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-32-J08 3',
mRNA sequence
Length = 307
Score = 109 bits (232), Expect = 1e-022
Identities = 47/73 (64%), Positives = 55/73 (75%)
Frame = -3 / -2
Query: 471 VIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLLNYNTLEKTETS* 292
VIGNKWD YL + +EGDALDAL+L RYC RRM+MTHVDLIEKLLNYNTLEK++ S*
Sbjct: 306 VIGNKWDQYLIFSSSTTAEGDALDALQLVRYCSRRMVMTHVDLIEKLLNYNTLEKSDNS* 127
Query: 291 VSKHIML*KHYCF 253
I+ K + F
Sbjct: 126 KRMQILAEKVFLF 88
>gb|BP578138.1|BP578138 BP578138 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-16-I15 3',
mRNA sequence
Length = 461
Score = 74.4 bits (156), Expect(2) = 2e-022
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = -3 / -1
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFR 382
K+IIPVRCFT +VIGNK D YLDLLQ +Y+EGDALD L+L R
Sbjct: 386 KIIIPVRCFTF*RVIGNKLDQYLDLLQLEYTEGDALDPLQLVR 258
Score = 53.3 bits (110), Expect(2) = 2e-022
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -3 / -3
Query: 372 RRMLMTHVDLIEKLLNYNTLEKTETS* 292
RR+LMTH DLIEKLLNYNTLEK++ S*
Sbjct: 246 RRILMTHFDLIEKLLNYNTLEKSDNS* 166
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
complete sequence
Length = 84797
Score = 75.3 bits (158), Expect(3) = 5e-022
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = -3 / +1
Query: 411 DALDALELFRYCCRRMLMTHVDLIEKLLNYNTL 313
DALDAL+L RYCCRRMLMTHVDLIEKLLNYN++
Sbjct: 48169 DALDALQLVRYCCRRMLMTHVDLIEKLLNYNSI 48267
Score = 46.0 bits (94), Expect(3) = 5e-022
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -3 / +3
Query: 471 VIGNKWDLYLDLLQADYSEG 412
VIGNKWD YLDLLQ DY+EG
Sbjct: 47343 VIGNKWDQYLDLLQLDYTEG 47402
Score = 38.6 bits (78), Expect(3) = 5e-022
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = -3 / +1
Query: 510 KMIIPVRCFTCGKV 469
KMIIPVRCFTCGKV
Sbjct: 47101 KMIIPVRCFTCGKV 47142
>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
sequence
Length = 87394
Score = 72.5 bits (152), Expect(3) = 3e-021
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -3 / +2
Query: 411 DALDALELFRYCCRRMLMTHVDLIEKLLNYNT 316
DALDAL L RYCCRRMLMTHVDLIEKLLNYN+
Sbjct: 39797 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNS 39892
Score = 48.7 bits (100), Expect(3) = 3e-021
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -3 / +3
Query: 471 VIGNKWDLYLDLLQADYSEGDALDAL 394
VIGNKWD YL+LLQADY+EG A+ +L
Sbjct: 39156 VIGNKWDTYLELLQADYAEG*AIYSL 39233
Score = 35.9 bits (72), Expect(3) = 3e-021
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -3 / +3
Query: 507 MIIPVRCFTCGKV 469
MI+PVRCFTCGKV
Sbjct: 39000 MIVPVRCFTCGKV 39038
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,099,458,772
Number of Sequences: 1013581
Number of extensions: 13049678
Number of successful extensions: 143489
Number of sequences better than 1.0e-020: 20
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 36343300245
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)