TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-... 138 7e-034
gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-... 138 8e-034
gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, compl... 138 1e-033
dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, cl... 138 1e-033
dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, cl... 138 1e-033
emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cD... 138 2e-033
ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2)... 138 2e-033
gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green ... 128 6e-032
gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20... 128 9e-032
gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots ... 128 1e-031
gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20... 128 1e-031
gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, compl... 128 1e-031
gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green ... 128 1e-031
ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1)... 128 1e-031
gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower... 128 2e-031
emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cD... 128 3e-031
gb|AY170845.1| Arabidopsis thaliana putative membrane prote... 128 3e-031
gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, comp... 128 3e-031
ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASC... 128 3e-031
gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana ... 125 2e-030
gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA,... 125 3e-030
gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17... 125 3e-030
gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana... 91 1e-028
emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cD... 80 2e-027
gb|AV538132.1|AV538132 AV538132 Arabidopsis thaliana roots ... 114 3e-027
gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D... 123 7e-027
ref|NM_127402.2| Arabidopsis thaliana LCV3 AT2G18460 (LCV3)... 123 7e-027
ref|NM_201755.1| Arabidopsis thaliana LCV3 AT2G18460 (LCV3)... 123 7e-027
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 123 7e-027
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 91 7e-027
gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromoso... 91 8e-027
gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 B... 91 8e-027
gb|AV790003.1|AV790003 AV790003 RAFL6 Arabidopsis thaliana ... 107 2e-025
gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G1... 80 3e-025
emb|BX820909.1|CNS0A9PK Arabidopsis thaliana Full-length cD... 79 4e-023
gb|AV786450.1|AV786450 AV786450 RAFL6 Arabidopsis thaliana ... 108 4e-023
>gb|AI996841.1|AI996841 701668691 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701668691, mRNA sequence
Length = 551
Score = 138 bits (295), Expect(2) = 7e-034
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 408 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 229
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 228 IREGIEIIV 202
Score = 115 bits (246), Expect = 2e-024
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / +2
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 203 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 382
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 383 PIRG*RMIA 409
Score = 31.3 bits (62), Expect(2) = 7e-034
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 213 EIIVSVGMTMPQVISHVD 160
>gb|CB263161.1|CB263161 32-E9779-008-018-P08-pbl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767P0818Q 5-PRIME, mRNA sequence
Length = 664
Score = 138 bits (295), Expect(2) = 8e-034
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 203 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 382
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 383 IREGIEIIV 409
Score = 115 bits (246), Expect(2) = 4e-025
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / -2
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 408 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 229
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 228 PIRG*RMIA 202
Score = 31.3 bits (62), Expect(2) = 8e-034
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +2
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 398 EIIVSVGMTMPQVISHVD 451
Score = 24.4 bits (47), Expect(2) = 4e-025
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -2 / -1
Query: 1040 FFFFFWSE 1017
FFFFFW+E
Sbjct: 649 FFFFFWTE 626
>gb|AY086303.1| Arabidopsis thaliana clone 23672 mRNA, complete sequence
Length = 995
Score = 138 bits (295), Expect(2) = 1e-033
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 543 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 722
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 723 IREGIEIIV 749
Score = 115 bits (246), Expect = 2e-024
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / -2
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 748 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 569
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 568 PIRG*RMIA 542
Score = 31.3 bits (62), Expect(2) = 1e-033
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 738 EIIVSVGMTMPQVISHVD 791
>dbj|AK176760.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-30-F01
Length = 995
Score = 138 bits (295), Expect(2) = 1e-033
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 553 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 732
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 733 IREGIEIIV 759
Score = 115 bits (246), Expect = 2e-024
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / -1
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 758 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 579
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 578 PIRG*RMIA 552
Score = 31.3 bits (62), Expect(2) = 1e-033
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 748 EIIVSVGMTMPQVISHVD 801
>dbj|AK176692.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-23-L15
Length = 999
Score = 138 bits (295), Expect(2) = 1e-033
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 553 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 732
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 733 IREGIEIIV 759
Score = 115 bits (246), Expect = 2e-024
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / -2
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 758 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 579
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 578 PIRG*RMIA 552
Score = 31.3 bits (62), Expect(2) = 1e-033
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 748 EIIVSVGMTMPQVISHVD 801
>emb|BX813825.1|CNS0ADOW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB41ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1277
Score = 138 bits (295), Expect(2) = 2e-033
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 514 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 693
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 694 IREGIEIIV 720
Score = 115 bits (246), Expect = 2e-024
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / -1
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 719 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 540
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 539 PIRG*RMIA 513
Score = 31.3 bits (62), Expect(2) = 2e-033
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 709 EIIVSVGMTMPQVISHVD 762
>ref|NM_103466.3| Arabidopsis thaliana LCV2 AT1G43130 (LCV2) mRNA, complete cds
Length = 1304
Score = 138 bits (295), Expect(2) = 2e-033
Identities = 56/69 (81%), Positives = 62/69 (89%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPRIGEYAFGFITS+V LQTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLS
Sbjct: 543 AIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLS 722
Query: 184 IREGIGMVV 210
IREGI ++V
Sbjct: 723 IREGIEIIV 749
Score = 115 bits (246), Expect = 2e-024
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = -2 / -2
Query: 209 TTIPIPSRIDKLGLXXXXEFTRNISPMYR*FVGTYTLHSSSSPLSV*RTTVDVMNPNAYS 30
T I IPSRIDK GL TRN SPMYR*FVGTYTLH+SSSP SV* T DV+NPNAYS
Sbjct: 748 TMISIPSRIDKFGLMISSLLTRNTSPMYR*FVGTYTLHNSSSPWSV*SVTDDVINPNAYS 569
Query: 29 PIRG*RIIA 3
PIRG*R+IA
Sbjct: 568 PIRG*RMIA 542
Score = 31.3 bits (62), Expect(2) = 2e-033
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EIIVS GMTMPQVI+ ++
Sbjct: 738 EIIVSVGMTMPQVISHVD 791
>gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ109h08F 3', mRNA sequence
Length = 583
Score = 128 bits (275), Expect(2) = 6e-032
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 484 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 305
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 304 VREGIEIVV 278
Score = 34.1 bits (68), Expect(2) = 6e-032
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / -1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 289 EIVVSGGMSMPQILSTLD 236
>gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 850
Score = 128 bits (275), Expect(2) = 9e-032
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 490 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 669
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 670 VREGIEIVV 696
Score = 34.1 bits (68), Expect(2) = 9e-032
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 685 EIVVSGGMSMPQILSTLD 738
>gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ42a07F 3', mRNA sequence
Length = 447
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 430 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 251
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 250 VREGIEIVV 224
Score = 32.7 bits (65), Expect(2) = 1e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 235 EIVVSGGMSMPQILSTVD 182
>gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 1084
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 629 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 808
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 809 VREGIEIVV 835
Score = 34.1 bits (68), Expect(2) = 1e-031
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / +2
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 824 EIVVSGGMSMPQILSTLD 877
>gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, complete sequence
Length = 1111
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 676 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 855
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 856 VREGIEIVV 882
Score = 34.1 bits (68), Expect(2) = 1e-031
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 871 EIVVSGGMSMPQILSTLD 924
>gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112h04F 3', mRNA sequence
Length = 486
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 470 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 291
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 290 VREGIEIVV 264
Score = 32.7 bits (65), Expect(2) = 1e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -2
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 275 EIVVSGGMSMPQILSTVD 222
>ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1) mRNA, complete cds
Length = 1203
Score = 128 bits (275), Expect(2) = 1e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 676 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 855
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 856 VREGIEIVV 882
Score = 34.1 bits (68), Expect(2) = 1e-031
Identities = 11/18 (61%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++L+
Sbjct: 871 EIVVSGGMSMPQILSTLD 924
>gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB025g07F 3', mRNA sequence
Length = 602
Score = 128 bits (275), Expect(2) = 2e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 502 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 323
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 322 VREGIEIVV 296
Score = 32.7 bits (65), Expect(2) = 2e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -2
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 307 EIVVSGGMSMPQILSTVD 254
>emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZH10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1014
Score = 128 bits (275), Expect(2) = 3e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 586 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 765
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 766 VREGIEIVV 792
Score = 32.7 bits (65), Expect(2) = 3e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 781 EIVVSGGMSMPQILSTVD 834
>gb|AY170845.1| Arabidopsis thaliana putative membrane protein COV (COV) mRNA,
complete cds
Length = 1127
Score = 128 bits (275), Expect(2) = 3e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 648 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 827
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 828 VREGIEIVV 854
Score = 32.7 bits (65), Expect(2) = 3e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 843 EIVVSGGMSMPQILSTVD 896
>gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, complete sequence
Length = 1165
Score = 128 bits (275), Expect(2) = 3e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 669 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 848
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 849 VREGIEIVV 875
Score = 32.7 bits (65), Expect(2) = 3e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 864 EIVVSGGMSMPQILSTVD 917
>ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASCULAR RING) AT2G20120
(COV1) mRNA, complete cds
Length = 1170
Score = 128 bits (275), Expect(2) = 3e-031
Identities = 54/69 (78%), Positives = 58/69 (84%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS
Sbjct: 669 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLS 848
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 849 VREGIEIVV 875
Score = 32.7 bits (65), Expect(2) = 3e-031
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 864 EIVVSGGMSMPQILSTVD 917
>gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-K21 3',
mRNA sequence
Length = 702
Score = 125 bits (267), Expect(2) = 2e-030
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTN LYIGDI LVNS RPNLS
Sbjct: 400 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNRLYIGDILLVNSNDVIRPNLS 221
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 220 VREGIEIVV 194
Score = 32.7 bits (65), Expect(2) = 2e-030
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 205 EIVVSGGMSMPQILSTVD 152
>gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 807
Score = 125 bits (267), Expect(2) = 3e-030
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTN LYIGDI LVNS RPNLS
Sbjct: 520 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNRLYIGDILLVNSNDVIRPNLS 699
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 700 VREGIEIVV 726
Score = 32.7 bits (65), Expect(2) = 3e-030
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 715 EIVVSGGMSMPQILSTVD 768
>gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 1069
Score = 125 bits (267), Expect(2) = 3e-030
Identities = 53/69 (76%), Positives = 57/69 (82%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHPR+GEYAFGFITSTVVLQ +EELC VYVPTN LYIGDI LVNS RPNLS
Sbjct: 670 AIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNRLYIGDILLVNSNDVIRPNLS 849
Query: 184 IREGIGMVV 210
+REGI +VV
Sbjct: 850 VREGIEIVV 876
Score = 32.7 bits (65), Expect(2) = 3e-030
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 865 EIVVSGGMSMPQILSTVD 918
>gb|CW798252.1|CW798252 WiscDsLox397F06 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 1132
Score = 90.9 bits (192), Expect(3) = 1e-028
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +1 / -2
Query: 70 QTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIG 201
QTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLSIREGIG
Sbjct: 690 QTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIG 559
Score = 50.1 bits (103), Expect(3) = 1e-028
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQ 72
AIIRHPRIGEYAFGFITS+ LQ
Sbjct: 839 AIIRHPRIGEYAFGFITSSXTLQ 771
Score = 31.8 bits (63), Expect(3) = 1e-028
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3 / -1
Query: 390 SAEIIVSGGMTMPQVIASLE 449
+ EIIVS GMTMPQVI+ ++
Sbjct: 478 ATEIIVSVGMTMPQVISHVD 419
>emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZG10 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1445
Score = 80.3 bits (169), Expect(3) = 2e-027
Identities = 34/48 (70%), Positives = 37/48 (77%)
Frame = +1 / +1
Query: 67 LQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMVV 210
LQ +EELC VYVPTNHLYIGDI LVNS RPNLS+REGI +VV
Sbjct: 1102 LQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVV 1245
Score = 56.1 bits (116), Expect(3) = 2e-027
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDK 81
AIIRHPR+GEYAFGFITSTVVLQ +
Sbjct: 913 AIIRHPRVGEYAFGFITSTVVLQVSE 990
Score = 32.7 bits (65), Expect(3) = 2e-027
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +1
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 1234 EIVVSGGMSMPQILSTVD 1287
>gb|AV538132.1|AV538132 AV538132 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ110c07F 3', mRNA sequence
Length = 464
Score = 114 bits (243), Expect(2) = 3e-027
Identities = 48/63 (76%), Positives = 52/63 (82%)
Frame = +1 / -3
Query: 22 RIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIG 201
R+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS RPNLS+REGI
Sbjct: 462 RVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIE 283
Query: 202 MVV 210
+VV
Sbjct: 282 IVV 274
Score = 32.7 bits (65), Expect(2) = 3e-027
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 285 EIVVSGGMSMPQILSTVD 232
>gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete
sequence
Length = 92861
Score = 123 bits (264), Expect = 7e-027
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +1 / -3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 13158 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 12979
Query: 184 IREGIG 201
+REGIG
Sbjct: 12978 VREGIG 12961
>ref|NM_127402.2| Arabidopsis thaliana LCV3 AT2G18460 (LCV3) transcript variant
AT2G18460.1 mRNA, complete cds
Length = 851
Score = 123 bits (264), Expect = 7e-027
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 490 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 669
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 670 VREGIEIVI 696
>ref|NM_201755.1| Arabidopsis thaliana LCV3 AT2G18460 (LCV3) transcript variant
AT2G18460.2 mRNA, complete cds
Length = 807
Score = 123 bits (264), Expect = 7e-027
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 484 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 663
Query: 184 IREGIGMVV 210
+REGI +V+
Sbjct: 664 VREGIEIVI 690
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 123 bits (264), Expect = 7e-027
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLS 183
AIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S RPNLS
Sbjct: 8009389 AIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLS 8009568
Query: 184 IREGIG 201
+REGIG
Sbjct: 8009569 VREGIG 8009586
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 90.9 bits (192), Expect(2) = 7e-027
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +1 / -1
Query: 70 QTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIG 201
QTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLSIREGIG
Sbjct: 715322 QTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIG 715191
Score = 52.4 bits (108), Expect(2) = 7e-027
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQ 72
AIIRHPRIGEYAFGFITS+V LQ
Sbjct: 715471 AIIRHPRIGEYAFGFITSSVTLQ 715403
>gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromosome 1, near 59 cM,
complete sequence
Length = 129271
Score = 90.9 bits (192), Expect(2) = 8e-027
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +1 / -3
Query: 70 QTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIG 201
QTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLSIREGIG
Sbjct: 998 QTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIG 867
Score = 52.4 bits (108), Expect(2) = 8e-027
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1 / -1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQ 72
AIIRHPRIGEYAFGFITS+V LQ
Sbjct: 1147 AIIRHPRIGEYAFGFITSSVTLQ 1079
>gb|AC026757.12|AC026757 Arabidopsis thaliana chromosome 1 BAC F2H10 genomic sequence, complete
sequence
Length = 95870
Score = 90.9 bits (192), Expect(2) = 8e-027
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +1 / -1
Query: 70 QTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIG 201
QTD G+EELCSVYVPTNHLYIGD+FLV+S RPNLSIREGIG
Sbjct: 91868 QTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIG 91737
Score = 52.4 bits (108), Expect(2) = 8e-027
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +1 / -2
Query: 4 AIIRHPRIGEYAFGFITSTVVLQ 72
AIIRHPRIGEYAFGFITS+V LQ
Sbjct: 92017 AIIRHPRIGEYAFGFITSSVTLQ 91949
>gb|AV790003.1|AV790003 AV790003 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-86-L17 3',
mRNA sequence
Length = 428
Score = 107 bits (229), Expect(2) = 2e-025
Identities = 46/61 (75%), Positives = 49/61 (80%)
Frame = +1 / -3
Query: 28 GEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMV 207
GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS PNLS+REGI +V
Sbjct: 426 GEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVISPNLSVREGIEIV 247
Query: 208 V 210
V
Sbjct: 246 V 244
Score = 32.7 bits (65), Expect(2) = 2e-025
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / -3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 255 EIVVSGGMSMPQILSTVD 202
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete
sequence
Length = 97814
Score = 80.3 bits (169), Expect(3) = 8e-025
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = +1 / +1
Query: 67 LQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMV 207
LQ +EELC VYVPTNHLYIGDI LVNS RPNLS+REGIG +
Sbjct: 30826 LQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIGEI 30966
Score = 80.3 bits (169), Expect(3) = 3e-025
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = +1 / +3
Query: 67 LQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMV 207
LQ +EELC VYVPTNHLYIGDI LVNS RPNLS+REGIG +
Sbjct: 27786 LQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIGEI 27926
Score = 56.1 bits (116), Expect(3) = 8e-025
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1 / +1
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDK 81
AIIRHPR+GEYAFGFITSTVVLQ +
Sbjct: 30637 AIIRHPRVGEYAFGFITSTVVLQVSE 30714
Score = 56.1 bits (116), Expect(3) = 3e-025
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1 / +3
Query: 4 AIIRHPRIGEYAFGFITSTVVLQTDK 81
AIIRHPR+GEYAFGFITSTVVLQ +
Sbjct: 27582 AIIRHPRVGEYAFGFITSTVVLQVSE 27659
Score = 37.7 bits (76), Expect(3) = 3e-025
Identities = 13/20 (65%), Positives = 20/20 (100%)
Frame = +3 / +3
Query: 390 SAEIIVSGGMTMPQVIASLE 449
SAEI+VSGGM+MPQ++++L+
Sbjct: 28026 SAEIVVSGGMSMPQILSTLD 28085
Score = 36.3 bits (73), Expect(3) = 8e-025
Identities = 12/20 (60%), Positives = 20/20 (100%)
Frame = +3 / +1
Query: 390 SAEIIVSGGMTMPQVIASLE 449
SAEI+VSGGM+MPQ++++++
Sbjct: 31066 SAEIVVSGGMSMPQILSTVD 31125
>emb|BX820909.1|CNS0A9PK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH80ZE08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1333
Score = 79.0 bits (166), Expect(3) = 4e-023
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +1 / +3
Query: 85 DEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMVV 210
+EELC VYVPTNHLYIGDI LVNS RPNLS+REGI +VV
Sbjct: 945 EEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVV 1070
Score = 42.8 bits (87), Expect(3) = 4e-023
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = +1 / +1
Query: 7 IIRHPRIGEYAFGFITSTVVLQTDK 81
IIRHPR G+ AFG ITSTVVL+ K
Sbjct: 742 IIRHPREGKNAFGLITSTVVLKVSK 816
Score = 32.7 bits (65), Expect(3) = 4e-023
Identities = 10/18 (55%), Positives = 18/18 (100%)
Frame = +3 / +3
Query: 396 EIIVSGGMTMPQVIASLE 449
EI+VSGGM+MPQ++++++
Sbjct: 1059 EIVVSGGMSMPQILSTVD 1112
>gb|AV786450.1|AV786450 AV786450 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-71-H23 3',
mRNA sequence
Length = 456
Score = 108 bits (230), Expect(2) = 4e-023
Identities = 46/61 (75%), Positives = 49/61 (80%)
Frame = +1 / -2
Query: 28 GEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSXXXXRPNLSIREGIGMV 207
GEYAFGFITSTV LQ +EELC VYVPTNHLYIGDI LVNS RPNLS+REGI +V
Sbjct: 446 GEYAFGFITSTVFLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIV 267
Query: 208 V 210
V
Sbjct: 266 V 264
Score = 24.4 bits (47), Expect(2) = 4e-023
Identities = 6/17 (35%), Positives = 15/17 (88%)
Frame = +3 / -3
Query: 399 IIVSGGMTMPQVIASLE 449
++ GGM+MPQ++++++
Sbjct: 271 LLFRGGMSMPQILSTVD 221
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,353,864,837
Number of Sequences: 1013581
Number of extensions: 35948635
Number of successful extensions: 215639
Number of sequences better than 1.0e-020: 41
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 70864583997
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)