TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430769.2.1
(617 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_119566.3| Arabidopsis thaliana O-methyltransferase/ ... 126 3e-032
gb|AY057554.1| Arabidopsis thaliana AT4g34050/F28A23_190 mR... 126 3e-032
emb|BX826590.1|CNS0A35S Arabidopsis thaliana Full-length cD... 126 3e-032
emb|BX828287.1|CNS0A315 Arabidopsis thaliana Full-length cD... 126 3e-032
gb|AY062630.1| Arabidopsis thaliana Phosphoglycerate dehydr... 126 3e-032
gb|CF652643.1|CF652643 68-L020135w-066-001-G17-SP6P MPIZ-AD... 126 3e-032
gb|AY081457.1| Arabidopsis thaliana phosphoglycerate dehydr... 126 3e-032
gb|AV782400.1|AV782400 AV782400 RAFL4 Arabidopsis thaliana ... 126 3e-032
gb|AY143979.1| Arabidopsis thaliana At4g34050/F28A23_190 mR... 124 8e-032
emb|CQ804646.1| Sequence 1057 from Patent WO2004035798 124 8e-032
emb|CQ805684.1| Sequence 2095 from Patent WO2004035798 124 8e-032
gb|BE844710.1|BE844710 AD01C10T7 AD A. thaliana (Col-0 gl1)... 126 1e-031
gb|AV538609.1|AV538609 AV538609 Arabidopsis thaliana roots ... 126 1e-031
gb|AV538779.1|AV538779 AV538779 Arabidopsis thaliana roots ... 124 2e-031
gb|AY088577.1| Arabidopsis thaliana clone 8049 mRNA, comple... 122 3e-031
emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome... 122 2e-028
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 122 4e-028
gb|AV543668.1|AV543668 AV543668 Arabidopsis thaliana roots ... 126 8e-028
gb|AV551403.1|AV551403 AV551403 Arabidopsis thaliana roots ... 126 8e-028
gb|AV557479.1|AV557479 AV557479 Arabidopsis thaliana green ... 126 8e-028
gb|AV564395.1|AV564395 AV564395 Arabidopsis thaliana green ... 126 8e-028
gb|BP612130.1|BP612130 BP612130 RAFL16 Arabidopsis thaliana... 126 8e-028
ref|NM_179160.1| Arabidopsis thaliana O-methyltransferase A... 124 2e-027
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 122 1e-026
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 122 1e-026
gb|AV543497.1|AV543497 AV543497 Arabidopsis thaliana roots ... 121 2e-026
gb|BU635690.1|BU635690 004G05 Infected Arabidopsis Leaf Ara... 110 5e-026
gb|AV542254.1|AV542254 AV542254 Arabidopsis thaliana roots ... 117 2e-025
gb|AV565601.1|AV565601 AV565601 Arabidopsis thaliana green ... 117 3e-025
gb|CK119117.1|CK119117 214h16.p1 AtM1 Arabidopsis thaliana ... 100 9e-025
gb|AV538191.1|AV538191 AV538191 Arabidopsis thaliana roots ... 113 6e-024
gb|AV539351.1|AV539351 AV539351 Arabidopsis thaliana roots ... 84 8e-024
gb|AI995849.1|AI995849 701548909 A. thaliana, Columbia Col-... 88 2e-023
gb|AV535845.1|AV535845 AV535845 Arabidopsis thaliana flower... 111 3e-023
gb|AV560983.1|AV560983 AV560983 Arabidopsis thaliana green ... 111 3e-023
gb|AV567247.1|AV567247 AV567247 Arabidopsis thaliana green ... 110 4e-023
gb|BP636344.1|BP636344 BP636344 RAFL18 Arabidopsis thaliana... 109 7e-023
gb|AA042641.1|AA042641 24873 CD4-13 Arabidopsis thaliana cD... 108 2e-022
gb|BP572094.1|BP572094 BP572094 RAFL14 Arabidopsis thaliana... 105 2e-021
gb|BP620109.1|BP620109 BP620109 RAFL16 Arabidopsis thaliana... 103 4e-021
emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosom... 68 6e-021
emb|AL049171.1|ATT25K17 Arabidopsis thaliana DNA chromosome... 68 7e-021
emb|AX461218.1| Sequence 147 from Patent WO0198480 68 7e-021
>ref|NM_119566.3| Arabidopsis thaliana O-methyltransferase/
S-adenosylmethionine-dependent methyltransferase
AT4G34050 transcript variant AT4G34050.1 mRNA, complete
cds
Length = 1091
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 546 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 725
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 726 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 854
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 477 EKAGVAHKIDFREGPALPVLDE 542
>gb|AY057554.1| Arabidopsis thaliana AT4g34050/F28A23_190 mRNA, complete cds
Length = 1026
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 543 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 722
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 723 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 851
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 474 EKAGVAHKIDFREGPALPVLDE 539
>emb|BX826590.1|CNS0A35S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB44ZH02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1024
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 521 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 700
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 701 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 829
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 452 EKAGVAHKIDFREGPALPVLDE 517
>emb|BX828287.1|CNS0A315 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH71ZC07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1003
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 521 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 700
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 701 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 829
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 452 EKAGVAHKIDFREGPALPVLDE 517
>gb|AY062630.1| Arabidopsis thaliana Phosphoglycerate dehydrogenase - like protein
(At4g34050) mRNA, complete cds
Length = 999
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 545 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 724
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 725 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 853
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 476 EKAGVAHKIDFREGPALPVLDE 541
>gb|CF652643.1|CF652643 68-L020135w-066-001-G17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001G171Q 5-PRIME, mRNA sequence
Length = 924
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 533 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 712
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 713 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 841
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 464 EKAGVAHKIDFREGPALPVLDE 529
>gb|AY081457.1| Arabidopsis thaliana phosphoglycerate dehydrogenase-like protein
(At4g34050) mRNA, complete cds
Length = 815
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 478 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 657
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 658 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 786
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 409 EKAGVAHKIDFREGPALPVLDE 474
>gb|AV782400.1|AV782400 AV782400 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-C19 3',
mRNA sequence
Length = 681
Score = 126 bits (269), Expect(2) = 3e-032
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 454 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 275
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 274 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 146
Score = 34.5 bits (69), Expect(2) = 3e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / -3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 523 EKAGVAHKIDFREGPALPVLDE 458
>gb|AY143979.1| Arabidopsis thaliana At4g34050/F28A23_190 mRNA, complete cds
Length = 780
Score = 124 bits (266), Expect(2) = 8e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 478 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 657
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 658 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 774
Score = 34.5 bits (69), Expect(2) = 8e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 409 EKAGVAHKIDFREGPALPVLDE 474
>emb|CQ804646.1| Sequence 1057 from Patent WO2004035798
Length = 780
Score = 124 bits (266), Expect(2) = 8e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 478 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 657
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 658 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 774
Score = 34.5 bits (69), Expect(2) = 8e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 409 EKAGVAHKIDFREGPALPVLDE 474
>emb|CQ805684.1| Sequence 2095 from Patent WO2004035798
Length = 780
Score = 124 bits (266), Expect(2) = 8e-032
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 478 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 657
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 658 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 774
Score = 34.5 bits (69), Expect(2) = 8e-032
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 409 EKAGVAHKIDFREGPALPVLDE 474
>gb|BE844710.1|BE844710 AD01C10T7 AD A. thaliana (Col-0 gl1) library enriched for
salt-induced transcripts; 10-14 day seedlings; 4h 160mM
NaCl stress Arabidopsis thaliana cDNA clone AD01C10
similar to T05431 probable caffeoyl-CoA
O-methyltransferase (EC 2.1.1.104) F28A23.190, mRNA
sequence
Length = 587
Score = 126 bits (269), Expect(2) = 1e-031
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 470 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 291
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 290 YFRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 162
Score = 32.7 bits (65), Expect(2) = 1e-031
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2 / -1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGVA K+ FREGP L LD+
Sbjct: 539 KKAGVAHKIDFREGPALPVLDE 474
>gb|AV538609.1|AV538609 AV538609 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ119b12F 3', mRNA sequence
Length = 613
Score = 126 bits (269), Expect(2) = 1e-031
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 545 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 366
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 365 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 237
Score = 32.2 bits (64), Expect(2) = 1e-031
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 613 RAGVAGKVAFREGPPLEQLDK 551
+AGVA K+ FREGP L LD+
Sbjct: 611 KAGVAHKIDFREGPALPVLDE 549
>gb|AV538779.1|AV538779 AV538779 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121b07F 3', mRNA sequence
Length = 595
Score = 124 bits (265), Expect(2) = 2e-031
Identities = 48/103 (46%), Positives = 64/103 (62%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK Y++YH++ YDNTLW G+V PPDAP+
Sbjct: 484 VADEKNHGTYDFIFVDADKDKYIKYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 305
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 304 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 176
Score = 33.6 bits (67), Expect(2) = 2e-031
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / -1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 553 EKAGVAHKMDFREGPALPVLDE 488
>gb|AY088577.1| Arabidopsis thaliana clone 8049 mRNA, complete sequence
Length = 1033
Score = 122 bits (262), Expect(2) = 3e-031
Identities = 48/103 (46%), Positives = 63/103 (61%)
Frame = -3 / +1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK Y+ YH++ YDNTLW G+V PPDAP+
Sbjct: 547 VADEKNHGTYDFIFVDADKDXYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 726
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 727 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 855
Score = 34.5 bits (69), Expect(2) = 3e-031
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 478 EKAGVAHKIDFREGPALPVLDE 543
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project)
Length = 94091
Score = 122 bits (260), Expect(2) = 2e-028
Identities = 47/98 (47%), Positives = 61/98 (62%)
Frame = -3 / +3
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R +
Sbjct: 15195 NHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYY 15374
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
+ ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 15375 RDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 15488
Score = 34.5 bits (69), Expect(2) = 2e-028
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 14929 EKAGVAHKIDFREGPALPVLDE 14994
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 122 bits (260), Expect(2) = 4e-028
Identities = 47/98 (47%), Positives = 61/98 (62%)
Frame = -3 / +2
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R +
Sbjct: 145244 NHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYY 145423
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
+ ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 145424 RDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 145537
Score = 34.5 bits (69), Expect(2) = 4e-028
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 144978 EKAGVAHKIDFREGPALPVLDE 145043
>gb|AV543668.1|AV543668 AV543668 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ204e12F 3', mRNA sequence
Length = 603
Score = 126 bits (269), Expect = 8e-028
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 545 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 366
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 365 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 237
>gb|AV551403.1|AV551403 AV551403 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ126c06R 5', mRNA sequence
Length = 562
Score = 126 bits (269), Expect = 8e-028
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 543 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 364
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 363 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 235
>gb|AV557479.1|AV557479 AV557479 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ069g05F 3', mRNA sequence
Length = 496
Score = 126 bits (269), Expect = 8e-028
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 486 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 307
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 306 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 178
>gb|AV564395.1|AV564395 AV564395 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ203h01F 3', mRNA sequence
Length = 557
Score = 126 bits (269), Expect = 8e-028
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 545 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 366
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 365 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 237
>gb|BP612130.1|BP612130 BP612130 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-88-F23 3',
mRNA sequence
Length = 443
Score = 126 bits (269), Expect = 8e-028
Identities = 49/103 (47%), Positives = 64/103 (62%)
Frame = -3 / -3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 438 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 259
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 258 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 130
>ref|NM_179160.1| Arabidopsis thaliana O-methyltransferase AT4G34050 transcript
variant AT4G34050.2 mRNA, complete cds
Length = 476
Score = 124 bits (266), Expect = 2e-027
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 174 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 353
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 354 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 470
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 122 bits (260), Expect = 1e-026
Identities = 47/98 (47%), Positives = 61/98 (62%)
Frame = -3 / +1
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R +
Sbjct: 12224473 NHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYY 12224652
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
+ ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 12224653 RDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 12224766
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 122 bits (260), Expect = 1e-026
Identities = 47/98 (47%), Positives = 61/98 (62%)
Frame = -3 / +1
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R +
Sbjct: 16311691 NHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYY 16311870
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
+ ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 16311871 RDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 16311984
>gb|AV543497.1|AV543497 AV543497 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ201g06F 3', mRNA sequence
Length = 497
Score = 121 bits (259), Expect = 2e-026
Identities = 47/103 (45%), Positives = 63/103 (61%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD G +DF FVDADK NY+ +H++ YDNTLW G+V PPDAP+
Sbjct: 473 VADEKTHGTYDFIFVDADKDNYINFHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 294
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 293 YVRYYKDFVLELNKALAVDPRIEICMLPVGDGITICRRIS*FD 165
>gb|BU635690.1|BU635690 004G05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 748
Score = 110 bits (234), Expect(2) = 5e-026
Identities = 42/91 (46%), Positives = 55/91 (60%)
Frame = -3 / +2
Query: 531 NPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRF 352
N G +DF FVDAD NY+ YH++ YDNTLW G+V PPDAP+ R +
Sbjct: 476 NHGTYDFIFVDAD*DNYINYHKRLIDLVKIGGVIGYDNTLWNGSVEAPPDAPMRKYVRYY 655
Query: 351 SAAIRELNVRLSQDPRVEVCQLAIADGVTIC 259
+ ELN L+ DPR+E+C L + DG+TIC
Sbjct: 656 RDFVLELNKALAADPRIEICMLPVGDGITIC 748
Score = 29.5 bits (58), Expect(2) = 5e-026
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGP 572
E+AGVA K+ FREGP
Sbjct: 390 EKAGVAHKIDFREGP 434
>gb|AV542254.1|AV542254 AV542254 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ181b05F 3', mRNA sequence
Length = 576
Score = 117 bits (251), Expect = 2e-025
Identities = 47/103 (45%), Positives = 62/103 (60%)
Frame = -3 / -2
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD G +DF FVDADK NY+ YH++ YDNTLW G+V PP AP+
Sbjct: 545 VADEKIHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPYAPMRK 366
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
R + + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 365 YVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 237
>gb|AV565601.1|AV565601 AV565601 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ227c08F 3', mRNA sequence
Length = 509
Score = 117 bits (250), Expect = 3e-025
Identities = 45/94 (47%), Positives = 59/94 (62%)
Frame = -3 / -2
Query: 519 FDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAI 340
+DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R + +
Sbjct: 505 YDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFV 326
Query: 339 RELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 325 LELNKALAADPRIEICMLPVGDGITICRRIS*FD 224
>gb|CK119117.1|CK119117 214h16.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011H16214
5-PRIME, mRNA sequence
Length = 789
Score = 100 bits (214), Expect(2) = 9e-025
Identities = 39/85 (45%), Positives = 51/85 (60%)
Frame = -3 / +3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSD 367
+AD N G +DF FVDADK NY+ YH++ YDNTLW G+V PPDAP+
Sbjct: 531 VADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRK 710
Query: 366 LDRRFSAAIRELNVRLSQDPRVEVC 292
R + + ELN L+ DPR+E+C
Sbjct: 711 YVRYYRDFVLELNKALAADPRIEIC 785
Score = 34.5 bits (69), Expect(2) = 9e-025
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
E+AGVA K+ FREGP L LD+
Sbjct: 462 EKAGVAHKIDFREGPALPVLDE 527
>gb|AV538191.1|AV538191 AV538191 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ111d01F 3', mRNA sequence
Length = 449
Score = 113 bits (241), Expect = 6e-024
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3 / -1
Query: 513 FAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRE 334
F FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R + + E
Sbjct: 449 FIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLE 270
Query: 333 LNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
LN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 269 LNKALAADPRIEICMLPVGDGITICRRIS*FD 174
>gb|AV539351.1|AV539351 AV539351 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ130e08F 3', mRNA sequence
Length = 552
Score = 84.5 bits (178), Expect(2) = 8e-024
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = -3 / -1
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNT W G+V PPDAP+ R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 402 YDNTPWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS 223
Query: 246 *CD 238
* D
Sbjct: 222 *FD 214
Score = 47.8 bits (98), Expect(2) = 8e-024
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -3 / -3
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQ 463
+AD N G +DF FVDADK NY++YH++
Sbjct: 523 VADEKNHGTYDFIFVDADKDNYIKYHKR 440
>gb|AI995849.1|AI995849 701548909 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701548909, mRNA sequence
Length = 472
Score = 87.7 bits (185), Expect(2) = 2e-023
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = -3 / -3
Query: 426 YDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV 247
YDNTLW G+V PPDAP+ R + + ELN L+ DPR+E+C L + DG+TICRR+
Sbjct: 329 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS 150
Query: 246 *CD 238
* D
Sbjct: 149 *FD 141
Score = 43.7 bits (89), Expect(2) = 2e-023
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3 / -1
Query: 546 LADPANPGAFDFAFVDADKPNYVRYHEQ 463
+AD N G +D FVDADK NY+ YH++
Sbjct: 448 VADEKNHGTYDXIFVDADKDNYINYHKR 365
>gb|AV535845.1|AV535845 AV535845 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB103c08F 3', mRNA sequence
Length = 448
Score = 111 bits (236), Expect = 3e-023
Identities = 43/90 (47%), Positives = 56/90 (62%)
Frame = -3 / -2
Query: 507 FVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELN 328
FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R + + ELN
Sbjct: 444 FVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN 265
Query: 327 VRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 264 KALAADPRIEICMLPVGDGITICRRIS*FD 175
>gb|AV560983.1|AV560983 AV560983 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ143h09F 3', mRNA sequence
Length = 411
Score = 111 bits (236), Expect = 3e-023
Identities = 43/90 (47%), Positives = 56/90 (62%)
Frame = -3 / -1
Query: 507 FVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELN 328
FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R + + ELN
Sbjct: 408 FVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN 229
Query: 327 VRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 228 KALAADPRIEICMLPVGDGITICRRIS*FD 139
>gb|AV567247.1|AV567247 AV567247 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL09f05F 3', mRNA sequence
Length = 390
Score = 110 bits (235), Expect = 4e-023
Identities = 43/90 (47%), Positives = 56/90 (62%)
Frame = -3 / -2
Query: 507 FVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELN 328
FVDADKP Y+ YH++ YDNTLW G+V PPDAP+ R + + ELN
Sbjct: 386 FVDADKPIYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDLVIELN 207
Query: 327 VRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 206 KALAADPRIEICMLPVGDGITICRRIS*FD 117
>gb|BP636344.1|BP636344 BP636344 RAFL18 Arabidopsis thaliana cDNA clone RAFL18-04-D13 3',
mRNA sequence
Length = 449
Score = 109 bits (233), Expect = 7e-023
Identities = 41/86 (47%), Positives = 54/86 (62%)
Frame = -3 / -2
Query: 507 FVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELN 328
FVDADK NY+ YH++ YDNTLW G+V PPDAP+ R + + ELN
Sbjct: 445 FVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN 266
Query: 327 VRLSQDPRVEVCQLAIADGVTICRRV 250
L+ DPR+E+C L + DG+TICRR+
Sbjct: 265 KALAADPRIEICMLPVGDGITICRRI 188
>gb|AA042641.1|AA042641 24873 CD4-13 Arabidopsis thaliana cDNA clone E12B7T7, mRNA sequence
Length = 582
Score = 108 bits (230), Expect = 2e-022
Identities = 43/100 (43%), Positives = 57/100 (57%)
Frame = -3 / -2
Query: 537 PANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDR 358
P + G DADK NY+ YH++ YDNTLW G+V PPDAP+ R
Sbjct: 437 PEDHGHMALXXXDADKGNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVR 258
Query: 357 RFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRVV*CD 238
+ + ELN L+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 257 YYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS*FD 138
>gb|BP572094.1|BP572094 BP572094 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-78-L03 3',
mRNA sequence
Length = 441
Score = 105 bits (223), Expect = 2e-021
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = -3 / -1
Query: 501 DADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVR 322
DADK NY+ YH++ YDNTLW G+V PPDAP+ R + + ELN
Sbjct: 441 DADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKA 262
Query: 321 LSQDPRVEVCQLAIADGVTICRRV 250
L+ DPR+E+C L + DG+TICRR+
Sbjct: 261 LAADPRIEICMLPVGDGITICRRI 190
>gb|BP620109.1|BP620109 BP620109 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-35-N22 3',
mRNA sequence
Length = 435
Score = 103 bits (220), Expect = 4e-021
Identities = 40/87 (45%), Positives = 53/87 (60%)
Frame = -3 / -3
Query: 498 ADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALPPDAPLSDLDRRFSAAIRELNVRL 319
ADK NY+ YH++ YDNTLW G+V PPDAP+ R + + ELN L
Sbjct: 433 ADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKAL 254
Query: 318 SQDPRVEVCQLAIADGVTICRRVV*CD 238
+ DPR+E+C L + DG+TICRR+ * D
Sbjct: 253 AADPRIEICMLPVGDGITICRRIS*FD 173
>emb|AL161564.2|ATCHRIV64 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64
Length = 196286
Score = 68.4 bits (143), Expect(3) = 6e-021
Identities = 29/54 (53%), Positives = 32/54 (59%)
Frame = -3 / +1
Query: 549 FLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALP 388
F+ N G FDFAFVDADK NY YHE+ VYDNTLW G+VA P
Sbjct: 173308 FVMQKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP 173469
Score = 48.3 bits (99), Expect(3) = 6e-021
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -3 / +1
Query: 387 PDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
PD+ + A ELN +LS D RV++ Q A+ DG+TICRR+
Sbjct: 173467 PDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRL 173604
Score = 23.1 bits (44), Expect(3) = 6e-021
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ F+E L LD+
Sbjct: 173156 KKAGVEHKIDFKESEALPALDE 173221
>emb|AL049171.1|ATT25K17 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project)
Length = 89904
Score = 68.4 bits (143), Expect(3) = 7e-021
Identities = 29/54 (53%), Positives = 32/54 (59%)
Frame = -3 / +1
Query: 549 FLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALP 388
F+ N G FDFAFVDADK NY YHE+ VYDNTLW G+VA P
Sbjct: 28954 FVMQKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP 29115
Score = 48.3 bits (99), Expect(3) = 7e-021
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -3 / +1
Query: 387 PDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
PD+ + A ELN +LS D RV++ Q A+ DG+TICRR+
Sbjct: 29113 PDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRL 29250
Score = 23.1 bits (44), Expect(3) = 7e-021
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / +2
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ F+E L LD+
Sbjct: 28802 KKAGVEHKIDFKESEALPALDE 28867
>emb|AX461218.1| Sequence 147 from Patent WO0198480
Length = 2000
Score = 68.4 bits (143), Expect(3) = 7e-021
Identities = 29/54 (53%), Positives = 32/54 (59%)
Frame = -3 / +2
Query: 549 FLADPANPGAFDFAFVDADKPNYVRYHEQXXXXXXXXXXXVYDNTLWAGTVALP 388
F+ N G FDFAFVDADK NY YHE+ VYDNTLW G+VA P
Sbjct: 818 FVMQKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP 979
Score = 48.3 bits (99), Expect(3) = 7e-021
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -3 / +2
Query: 387 PDAPLSDLDRRFSAAIRELNVRLSQDPRVEVCQLAIADGVTICRRV 250
PD+ + A ELN +LS D RV++ Q A+ DG+TICRR+
Sbjct: 977 PDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRL 1114
Score = 23.1 bits (44), Expect(3) = 7e-021
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / +3
Query: 616 ERAGVAGKVAFREGPPLEQLDK 551
++AGV K+ F+E L LD+
Sbjct: 666 KKAGVEHKIDFKESEALPALDE 731
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 878,646,148
Number of Sequences: 1013581
Number of extensions: 8745661
Number of successful extensions: 245238
Number of sequences better than 1.0e-020: 48
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37085000250
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)