TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 121 1e-048
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 121 1e-048
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 121 1e-048
dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alph... 121 1e-048
dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alph... 121 1e-048
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 120 3e-048
gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flower... 120 2e-046
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 121 4e-044
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 112 8e-033
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 112 8e-033
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 112 8e-033
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 112 8e-033
gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana c... 108 2e-027
gb|AV557271.1|AV557271 AV557271 Arabidopsis thaliana green ... 111 3e-023
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 64 9e-023
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 121 bits (259), Expect(3) = 1e-048
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 1646 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 1825
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1826 LYGTPSYWVQRFFAESSGATL 1888
Score = 111 bits (238), Expect(2) = 1e-030
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 1884 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1705
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 1704 AASAREARRLPVPASFPVTA 1645
Score = 77.1 bits (162), Expect(3) = 1e-048
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / +2
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 2057 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 2233
Score = 47.8 bits (98), Expect(2) = 1e-030
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / -1
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 2211 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 2047
Score = 35.4 bits (71), Expect(3) = 1e-048
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +2
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 1937 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 2044
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 121 bits (259), Expect(3) = 1e-048
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 1473 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 1652
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1653 LYGTPSYWVQRFFAESSGATL 1715
Score = 111 bits (238), Expect(2) = 1e-030
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 1711 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1532
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 1531 AASAREARRLPVPASFPVTA 1472
Score = 77.1 bits (162), Expect(3) = 1e-048
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / +3
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 1884 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 2060
Score = 47.8 bits (98), Expect(2) = 1e-030
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / -1
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 2038 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 1874
Score = 35.4 bits (71), Expect(3) = 1e-048
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +3
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 1764 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 1871
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 121 bits (259), Expect(3) = 1e-048
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 1399 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 1578
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1579 LYGTPSYWVQRFFAESSGATL 1641
Score = 111 bits (238), Expect(2) = 1e-030
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / -2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 1637 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1458
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 1457 AASAREARRLPVPASFPVTA 1398
Score = 77.1 bits (162), Expect(3) = 1e-048
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / +1
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 1810 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 1986
Score = 47.8 bits (98), Expect(2) = 1e-030
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / -2
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 1964 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 1800
Score = 35.4 bits (71), Expect(3) = 1e-048
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +1
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 1690 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 1797
>dbj|AK222175.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL24-02-J05
Length = 1328
Score = 121 bits (259), Expect(3) = 1e-048
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 541 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 720
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 721 LYGTPSYWVQRFFAESSGATL 783
Score = 111 bits (238), Expect(2) = 6e-031
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 779 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 600
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 599 AASAREARRLPVPASFPVTA 540
Score = 77.1 bits (162), Expect(3) = 1e-048
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / +1
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 952 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 1128
Score = 47.8 bits (98), Expect(2) = 6e-031
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / -1
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 1106 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 942
Score = 35.4 bits (71), Expect(3) = 1e-048
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +1
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 832 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 939
>dbj|AK220766.1| Arabidopsis thaliana mRNA for putative alpha-L-arabinofuranosidase,
partial cds, clone: RAFL22-21-H07
Length = 993
Score = 121 bits (259), Expect(3) = 1e-048
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 206 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 385
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 386 LYGTPSYWVQRFFAESSGATL 448
Score = 111 bits (238), Expect(2) = 5e-031
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 444 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 265
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 264 AASAREARRLPVPASFPVTA 205
Score = 77.1 bits (162), Expect(3) = 1e-048
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / +2
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 617 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 793
Score = 47.8 bits (98), Expect(2) = 5e-031
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / -1
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 771 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 607
Score = 35.4 bits (71), Expect(3) = 1e-048
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +2
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 497 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 604
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 120 bits (257), Expect(3) = 3e-048
Identities = 52/81 (64%), Positives = 55/81 (67%)
Frame = -3 / +2
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 1607 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVDMASYAPLFVNTNDRRWNPDAIVFNSSH 1786
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1787 LYGTPSYWVQRFFAESSGATL 1849
Score = 110 bits (235), Expect(2) = 3e-030
Identities = 56/80 (70%), Positives = 62/80 (77%)
Frame = +3 / -3
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LA+ T+SLFFSRP+R
Sbjct: 1845 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAMSTMSLFFSRPMRN 1666
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 1665 AASAREARRLPVPASFPVTA 1606
Score = 77.1 bits (162), Expect(3) = 3e-048
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / +2
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 2018 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 2194
Score = 47.8 bits (98), Expect(2) = 3e-030
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / -3
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 2172 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 2008
Score = 35.4 bits (71), Expect(3) = 3e-048
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +2
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 1898 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 2005
>gb|BX836814.1|BX836814 BX836814 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 3PRIM, mRNA sequence
Length = 1096
Score = 120 bits (257), Expect(3) = 2e-046
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / -3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 743 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 564
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 563 LYGTPSYWVQRSFAESSGATL 501
Score = 111 bits (238), Expect(2) = 5e-031
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / +1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 505 VAPLDSAKDR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 684
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 685 AASAREARRLPVPASFPVTA 744
Score = 77.1 bits (162), Expect(3) = 2e-046
Identities = 35/59 (59%), Positives = 39/59 (66%)
Frame = -3 / -1
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
GS TVLTS NVMDENSFS P KV P +S L A E M V L PHSF++FDL K+
Sbjct: 331 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 155
Score = 47.8 bits (98), Expect(2) = 5e-031
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / +3
Query: 213 RSKAVKE*GASVTCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
+S KE G T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 177 KSNEEKECGGRTTVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 341
Score = 29.5 bits (58), Expect(3) = 2e-046
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3 / -3
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLG 386
I+W++ +R+K VNFG++ ++ V + +G
Sbjct: 452 ISWKNNGKDHIRIKAVNFGANSENMQVFGNWIG 354
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 121 bits (259), Expect(4) = 4e-044
Identities = 52/81 (64%), Positives = 56/81 (69%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV DAG G L GLEKNSDIV+MASYAPLFVN ND+ WNPDAIVFNS
Sbjct: 1648 AVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVFNSSH 1827
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1828 LYGTPSYWVQRFFAESSGATL 1890
Score = 111 bits (238), Expect(2) = 9e-029
Identities = 57/80 (71%), Positives = 62/80 (77%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP +ELKTIASGFH S FTKSGA*LAI T+SLFFSRP+R
Sbjct: 1886 VAPLDSAKNR*TQ*LGVPYR*EELKTIASGFHRLSFVFTKSGA*LAISTMSLFFSRPMRN 1707
Query: 720 AASANEARRLPLPASLLQTA 779
AASA EARRLP+PAS TA
Sbjct: 1706 AASAREARRLPVPASFPVTA 1647
Score = 55.1 bits (114), Expect(4) = 4e-044
Identities = 26/40 (65%), Positives = 27/40 (67%)
Frame = -3 / +1
Query: 367 GSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQV 248
GS TVLTS NVMDENSFS P KV P +S L A E M V
Sbjct: 2059 GSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTV 2178
Score = 41.4 bits (84), Expect(2) = 9e-029
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +3 / -1
Query: 249 TCICSAALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSAL 377
T I S+A S L G T G KEFSS+TL +V TV DP L
Sbjct: 2177 TVISSSANSSKLSCGTTFSGCEKEFSSITLVEVSTVFFDPETL 2049
Score = 35.4 bits (71), Expect(4) = 4e-044
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3 / +1
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLGASV 377
I+W++ ++R+K VNFG++ ++ V +GL +V
Sbjct: 1939 ISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNV 2046
Score = 24.9 bits (48), Expect(4) = 4e-044
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3 / +2
Query: 244 LAPHSFTAFDLALAEPKL 191
L PHSF++FDL K+
Sbjct: 2183 LPPHSFSSFDLLKESAKI 2236
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 112 bits (239), Expect(2) = 8e-033
Identities = 49/81 (60%), Positives = 55/81 (67%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV ++DA G L GLEKNSDIV+M SYAPLFVN ND+ W PDAIVFNS
Sbjct: 1471 AVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSH 1650
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1651 LYGTPSYWVQHFFTESSGATL 1713
Score = 94.1 bits (199), Expect(2) = 1e-022
Identities = 50/80 (62%), Positives = 55/80 (68%)
Frame = +3 / -1
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP ELKTIASG H+ S TK GA*L I T+SLFFS+P RK
Sbjct: 1709 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1530
Query: 720 AASANEARRLPLPASLLQTA 779
AAS A+RLP AS L TA
Sbjct: 1529 AASPRAAKRLPFLASALFTA 1470
Score = 50.6 bits (104), Expect(2) = 8e-033
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = -3 / +1
Query: 415 SLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAP 236
S+ + + G GS VLTS +VMDENSFSNPN + P +S L ++ + + P
Sbjct: 1825 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLP 2004
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3 / -1
Query: 264 AALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAP 389
+ + S L G +FG KEFSS+TL DV T +DP + P
Sbjct: 1976 SVISSKLSCGTIIFGFEKEFSSITLADVSTFFLDP*NFAINP 1851
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 112 bits (239), Expect(2) = 8e-033
Identities = 49/81 (60%), Positives = 55/81 (67%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV ++DA G L GLEKNSDIV+M SYAPLFVN ND+ W PDAIVFNS
Sbjct: 1471 AVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSH 1650
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1651 LYGTPSYWVQHFFTESSGATL 1713
Score = 94.1 bits (199), Expect(2) = 1e-022
Identities = 50/80 (62%), Positives = 55/80 (68%)
Frame = +3 / -2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP ELKTIASG H+ S TK GA*L I T+SLFFS+P RK
Sbjct: 1709 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1530
Query: 720 AASANEARRLPLPASLLQTA 779
AAS A+RLP AS L TA
Sbjct: 1529 AASPRAAKRLPFLASALFTA 1470
Score = 50.6 bits (104), Expect(2) = 8e-033
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = -3 / +1
Query: 415 SLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAP 236
S+ + + G GS VLTS +VMDENSFSNPN + P +S L ++ + + P
Sbjct: 1825 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLP 2004
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3 / -2
Query: 264 AALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAP 389
+ + S L G +FG KEFSS+TL DV T +DP + P
Sbjct: 1976 SVISSKLSCGTIIFGFEKEFSSITLADVSTFFLDP*NFAINP 1851
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 112 bits (239), Expect(2) = 8e-033
Identities = 49/81 (60%), Positives = 55/81 (67%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV ++DA G L GLEKNSDIV+M SYAPLFVN ND+ W PDAIVFNS
Sbjct: 1396 AVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSH 1575
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1576 LYGTPSYWVQHFFTESSGATL 1638
Score = 94.1 bits (199), Expect(2) = 1e-022
Identities = 50/80 (62%), Positives = 55/80 (68%)
Frame = +3 / -2
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP ELKTIASG H+ S TK GA*L I T+SLFFS+P RK
Sbjct: 1634 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1455
Query: 720 AASANEARRLPLPASLLQTA 779
AAS A+RLP AS L TA
Sbjct: 1454 AASPRAAKRLPFLASALFTA 1395
Score = 50.6 bits (104), Expect(2) = 8e-033
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = -3 / +1
Query: 415 SLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAP 236
S+ + + G GS VLTS +VMDENSFSNPN + P +S L ++ + + P
Sbjct: 1750 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLP 1929
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3 / -2
Query: 264 AALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAP 389
+ + S L G +FG KEFSS+TL DV T +DP + P
Sbjct: 1901 SVISSKLSCGTIIFGFEKEFSSITLADVSTFFLDP*NFAINP 1776
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 112 bits (239), Expect(2) = 8e-033
Identities = 49/81 (60%), Positives = 55/81 (67%)
Frame = -3 / +3
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV ++DA G L GLEKNSDIV+M SYAPLFVN ND+ W PDAIVFNS
Sbjct: 1401 AVNKADAKNGNLLAALGEAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSH 1580
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 1581 LYGTPSYWVQHFFTESSGATL 1643
Score = 94.1 bits (199), Expect(2) = 1e-022
Identities = 50/80 (62%), Positives = 55/80 (68%)
Frame = +3 / -3
Query: 540 MAPLDSRKIVCIQ*LGVP*CCQELKTIASGFHVWSLSFTKSGA*LAI*TISLFFSRPVRK 719
+APLDS K Q*LGVP ELKTIASG H+ S TK GA*L I T+SLFFS+P RK
Sbjct: 1639 VAPLDSVKKCWTQ*LGVPYR*DELKTIASGIHLLSFVLTKRGA*LTISTMSLFFSKPRRK 1460
Query: 720 AASANEARRLPLPASLLQTA 779
AAS A+RLP AS L TA
Sbjct: 1459 AASPRAAKRLPFLASALFTA 1400
Score = 50.6 bits (104), Expect(2) = 8e-033
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = -3 / +3
Query: 415 SLTVSTSGLGASVNALGSTATVLTSGNVMDENSFSNPNKVAPVKSQLSNAAEQMQVTLAP 236
S+ + + G GS VLTS +VMDENSFSNPN + P +S L ++ + + P
Sbjct: 1755 SVNLKVAVTGLMAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLP 1934
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3 / -3
Query: 264 AALLSWLFTGATLFGLLKEFSSMTLPDVRTVAVDPSALTLAP 389
+ + S L G +FG KEFSS+TL DV T +DP + P
Sbjct: 1906 SVISSKLSCGTIIFGFEKEFSSITLADVSTFFLDP*NFAINP 1781
>gb|H37473.1|H37473 15602 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182B24T7, mRNA
sequence
Length = 481
Score = 108 bits (231), Expect(2) = 2e-027
Identities = 43/57 (75%), Positives = 47/57 (82%)
Frame = -3 / +1
Query: 709 GLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQHYGTPSYWMQTIFRESSGAM 539
GLEKNSDIV+MASYAPLFVN N + WNPDAIVFNS YGTPSYW+Q F ESSG +
Sbjct: 43 GLEKNSDIVEMASYAPLFVNTNXRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGXL 213
Score = 36.3 bits (73), Expect(2) = 2e-027
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3 / +3
Query: 484 ITWQDAENSFLRVKVVNFGSDPVSLTVSTSGLG 386
I+W++ ++R+K VNFG+ ++ V +GLG
Sbjct: 264 ISWKNNGKDYIRIKAVNFGAXSXNMQVLVTGLG 362
>gb|AV557271.1|AV557271 AV557271 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ064d12F 3', mRNA sequence
Length = 520
Score = 111 bits (237), Expect = 3e-023
Identities = 48/81 (59%), Positives = 55/81 (67%)
Frame = -3 / +1
Query: 778 AVWRSDAGRGXXXXXXXXXXXLTGLEKNSDIVQMASYAPLFVNDNDQTWNPDAIVFNSWQ 599
AV ++ A G L GLEKNSDIV+M SYAPLFVN ND+ W PDAIVFNS+
Sbjct: 265 AVNKAHAKNGNLLAALGEAAFLLGLEKNSDIVEMVSYAPLFVNTNDRRWIPDAIVFNSYH 444
Query: 598 HYGTPSYWMQTIFRESSGAMI 536
YGTPSYW+Q F ESSGA +
Sbjct: 445 LYGTPSYWVQHFFTESSGATL 507
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 63.8 bits (133), Expect(4) = 9e-023
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -3 / +3
Query: 634 WNPDAIVFNSWQHYGTPSYWMQTIFRESSGAMI 536
WNPDAIVFNS YGTPSYW+Q F ESSGA +
Sbjct: 54726 WNPDAIVFNSSHLYGTPSYWVQRFFAESSGATL 54824
Score = 44.1 bits (90), Expect(4) = 9e-023
Identities = 19/24 (79%), Positives = 19/24 (79%)
Frame = -3 / +3
Query: 367 GSTATVLTSGNVMDENSFSNPNKV 296
GS TVLTS NVMDENSFS P KV
Sbjct: 55068 GSKKTVLTSTNVMDENSFSQPEKV 55139
Score = 41.4 bits (84), Expect(4) = 9e-023
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -3 / +1
Query: 694 SDIVQMASYAPLFVNDNDQTW 632
SDIV+MASYAPLFVN ND+ +
Sbjct: 54586 SDIVEMASYAPLFVNTNDRRY 54648
Score = 38.2 bits (77), Expect(4) = 9e-023
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -3 / +1
Query: 301 KVAPVKSQLSNAAEQMQVTLAPHSFTAFDLALAEPKL 191
+V P +S L A E M V L PHSF++FDL K+
Sbjct: 55216 QVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 55326
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,544,128,110
Number of Sequences: 1013581
Number of extensions: 20500105
Number of successful extensions: 176006
Number of sequences better than 1.0e-020: 16
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 49982610062
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)