TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.1
(747 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R2... 59 1e-027
ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS ... 59 1e-027
emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cD... 59 1e-027
gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, comp... 55 1e-022
ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS ... 55 1e-022
gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R2... 55 1e-022
gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRN... 55 1e-022
gb|BT005024.1| Arabidopsis thaliana clone U20717 putative b... 55 1e-022
emb|AX589887.1| Sequence 69 from Patent WO02081695 55 1e-022
emb|AX652050.1| Sequence 948 from Patent WO03000898 55 1e-022
emb|CQ805662.1| Sequence 2073 from Patent WO2004035798 55 1e-022
ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS ... 55 2e-021
gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, compl... 55 2e-021
emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cD... 55 2e-021
gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/... 55 2e-021
gb|AY133801.1| Arabidopsis thaliana clone U10238 putative b... 55 2e-021
ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS ... 50 5e-021
>gb|BT004056.1| Arabidopsis thaliana clone RAFL15-26-E06 (R20474) putative
beta-expansin (At2g45110) mRNA, complete cds
Length = 977
Score = 58.8 bits (122), Expect(4) = 1e-027
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +3 / +3
Query: 48 PYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
P H DLSGKA G+LAKPG D+LR G++ V ++R C Y
Sbjct: 429 PVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 548
Score = 41.8 bits (85), Expect(4) = 1e-027
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3 / +3
Query: 327 AIWRMDTAKALKGPFSIRLTSESGKKVI 410
A+W++++ AL+GPF+IRLTS KVI
Sbjct: 702 AVWKVNSGSALRGPFNIRLTSGESHKVI 785
Score = 40.0 bits (81), Expect(4) = 1e-027
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3 / +3
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQ 281
G IVF ++ G NP Y++ +V++ DGD+ +EIQ
Sbjct: 552 GTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQ 659
Score = 39.6 bits (80), Expect(4) = 1e-027
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3 / +3
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
+ ES K ++A +VIP NW+PD Y S V F
Sbjct: 762 SGESHKVIVAYNVIPANWKPDESYRSIVNF 851
>ref|NM_130074.2| Arabidopsis thaliana ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)
AT2G45110 (ATEXPB4) mRNA, complete cds
Length = 956
Score = 58.8 bits (122), Expect(4) = 1e-027
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +3 / +3
Query: 48 PYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
P H DLSGKA G+LAKPG D+LR G++ V ++R C Y
Sbjct: 429 PVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 548
Score = 41.8 bits (85), Expect(4) = 1e-027
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3 / +3
Query: 327 AIWRMDTAKALKGPFSIRLTSESGKKVI 410
A+W++++ AL+GPF+IRLTS KVI
Sbjct: 702 AVWKVNSGSALRGPFNIRLTSGESHKVI 785
Score = 40.0 bits (81), Expect(4) = 1e-027
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3 / +3
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQ 281
G IVF ++ G NP Y++ +V++ DGD+ +EIQ
Sbjct: 552 GTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQ 659
Score = 39.6 bits (80), Expect(4) = 1e-027
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3 / +3
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
+ ES K ++A +VIP NW+PD Y S V F
Sbjct: 762 SGESHKVIVAYNVIPANWKPDESYRSIVNF 851
>emb|BX821210.1|CNS0A89M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL25ZE08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 58.8 bits (122), Expect(4) = 1e-027
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +3 / +2
Query: 48 PYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
P H DLSGKA G+LAKPG D+LR G++ V ++R C Y
Sbjct: 398 PVHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLY 517
Score = 41.8 bits (85), Expect(4) = 1e-027
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3 / +2
Query: 327 AIWRMDTAKALKGPFSIRLTSESGKKVI 410
A+W++++ AL+GPF+IRLTS KVI
Sbjct: 671 AVWKVNSGSALRGPFNIRLTSGESHKVI 754
Score = 40.0 bits (81), Expect(4) = 1e-027
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +3 / +2
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQ 281
G IVF ++ G NP Y++ +V++ DGD+ +EIQ
Sbjct: 521 GTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQ 628
Score = 39.6 bits (80), Expect(4) = 1e-027
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3 / +2
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
+ ES K ++A +VIP NW+PD Y S V F
Sbjct: 731 SGESHKVIVAYNVIPANWKPDESYRSIVNF 820
>gb|AY084478.1| Arabidopsis thaliana clone 109135 mRNA, complete sequence
Length = 1137
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 562
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +2
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 566 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 776 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 865
>ref|NM_127640.1| Arabidopsis thaliana ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)
AT2G20750 (ATEXPB1) mRNA, complete cds
Length = 1137
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +2
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 449 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 562
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +2
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 566 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 727
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +2
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 776 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 865
>gb|BT003932.1| Arabidopsis thaliana clone RAFL15-12-F16 (R20717) putative
beta-expansin pollen allergen protein (At2g20750) mRNA,
complete cds
Length = 1124
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +3
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 447 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 560
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +3
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 564 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 725
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +3
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 774 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 863
>gb|U95967.1|ATU95967 Arabidopsis thaliana beta-expansin mRNA, partial cds
Length = 1037
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +3
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 351 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 464
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +3
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 468 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 629
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +3
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 678 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 767
>gb|BT005024.1| Arabidopsis thaliana clone U20717 putative beta-expansin pollen
allergen protein (At2g20750) mRNA, complete cds
Length = 847
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 498
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|AX589887.1| Sequence 69 from Patent WO02081695
Length = 816
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 498
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|AX652050.1| Sequence 948 from Patent WO03000898
Length = 816
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 498
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>emb|CQ805662.1| Sequence 2073 from Patent WO2004035798
Length = 816
Score = 54.7 bits (113), Expect(3) = 1e-022
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG +A PG N +R+ G++++ +RR CKY
Sbjct: 385 HFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKY 498
Score = 53.3 bits (110), Expect(3) = 1e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ G +L++L+++ +GDI M I+ S EW MK WGA W
Sbjct: 502 GKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 663
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T + K + A DVIP NW P A YTS + F
Sbjct: 712 TLSNNKTLSATDVIPSNWVPKATYTSRLNF 801
>ref|NM_118965.2| Arabidopsis thaliana ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)
AT4G28250 (ATEXPB3) mRNA, complete cds
Length = 1299
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ +G +L++LV+F +GDI M I+ + EW MK WGA W
Sbjct: 577 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG FG LA G + LR+ G++ V +RR CKY
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKY 573
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T +GK + A DV+P NW P A Y+S + F
Sbjct: 787 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 876
>gb|AY087228.1| Arabidopsis thaliana clone 33023 mRNA, complete sequence
Length = 1257
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3 / +3
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ +G +L++LV+F +GDI M I+ + EW MK WGA W
Sbjct: 582 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 743
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3 / +3
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG FG LA G + LR+ G++ V +RR CKY
Sbjct: 465 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKY 578
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +3
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T +GK + A DV+P NW P A Y+S + F
Sbjct: 792 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 881
>emb|BX827016.1|CNS0A45X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB87ZG06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1257
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3 / +2
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ +G +L++LV+F +GDI M I+ + EW MK WGA W
Sbjct: 566 GKNIAFHVNEGSTDFWLSMLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 727
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3 / +2
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG FG LA G + LR+ G++ V +RR CKY
Sbjct: 449 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKY 562
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +2
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T +GK + A DV+P NW P A Y+S + F
Sbjct: 776 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 865
>gb|AY039986.1| Arabidopsis thaliana putative beta-expansin/allergen protein
(At4g28250) mRNA, complete cds
Length = 1216
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ +G +L++LV+F +GDI M I+ + EW MK WGA W
Sbjct: 577 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 738
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG FG LA G + LR+ G++ V +RR CKY
Sbjct: 460 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKY 573
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T +GK + A DV+P NW P A Y+S + F
Sbjct: 787 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 876
>gb|AY133801.1| Arabidopsis thaliana clone U10238 putative beta-expansin/allergen
protein (At4g28250) mRNA, complete cds
Length = 826
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 335
G+ I FH+ +G +L++LV+F +GDI M I+ + EW MK WGA W
Sbjct: 481 GKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 642
Score = 48.3 bits (99), Expect(3) = 2e-021
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG FG LA G + LR+ G++ V +RR CKY
Sbjct: 364 HFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKY 477
Score = 39.1 bits (79), Expect(3) = 2e-021
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 384 TSESGKKVIAKDVIPPNWRPDAVYTSNVQF 473
T +GK + A DV+P NW P A Y+S + F
Sbjct: 691 TLSAGKTLSATDVVPRNWAPKATYSSRLNF 780
>ref|NM_105241.3| Arabidopsis thaliana ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)
AT1G65680 (ATEXPB2) mRNA, complete cds
Length = 822
Score = 50.1 bits (103), Expect(3) = 5e-021
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3 / +1
Query: 291 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPP 431
S +W M SWGA+W++D + L+ P S+R+TS K + + P
Sbjct: 634 SDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIP 774
Score = 48.3 bits (99), Expect(3) = 5e-021
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +3 / +1
Query: 54 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKY 167
HFDLSG AFG++A G + +LR+ G + + +++V C Y
Sbjct: 397 HFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNY 510
Score = 42.3 bits (86), Expect(3) = 5e-021
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3 / +1
Query: 174 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 299
G+ + F ++KG N N AVLV +V DG+I +E++ L ++
Sbjct: 514 GKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSD 639
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,542,020,437
Number of Sequences: 1013581
Number of extensions: 21981578
Number of successful extensions: 159021
Number of sequences better than 1.0e-020: 17
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 47274192768
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)