TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_100894.2| Arabidopsis thaliana transcription factor/... 84 2e-026
gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, comp... 84 2e-026
gb|AF370569.1|AF370569 Arabidopsis thaliana similar to tran... 84 2e-026
gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADI... 84 2e-026
gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS... 84 2e-026
emb|AX412728.1| Sequence 492 from Patent WO0222675 84 2e-026
gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-... 84 2e-026
emb|X74319.1|ATLIM1 A.thaliana atl1 gene 84 1e-025
gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence 81 2e-025
gb|AV831505.1|AV831505 AV831505 RAFL9 Arabidopsis thaliana ... 77 4e-024
gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis tha... 84 9e-024
gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS... 69 4e-022
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 84 1e-021
>ref|NM_100894.2| Arabidopsis thaliana transcription factor/ zinc ion binding
AT1G10200 mRNA, complete cds
Length = 944
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 448 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 552
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 373 TKVSNMFGGTREKCVGCDKTVYPIEKV 453
>gb|AY085377.1| Arabidopsis thaliana clone 148790 mRNA, complete sequence
Length = 886
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 448 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 552
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 373 TKVSNMFGGTREKCVGCDKTVYPIEKV 453
>gb|AF370569.1|AF370569 Arabidopsis thaliana similar to transcription factor SF3
(pir|IS37656) (F14N23.8) mRNA, complete cds
Length = 610
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 364 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 468
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 289 TKVSNMFGGTREKCVGCDKTVYPIEKV 369
>gb|CB263957.1|CB263957 02-E011587-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 392 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 496
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 317 TKVSNMFGGTREKCVGCDKTVYPIEKV 397
>gb|CB263958.1|CB263958 02-E011587-008-014-D07-rev MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 592
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 392 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 496
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 317 TKVSNMFGGTREKCVGCDKTVYPIEKV 397
>emb|AX412728.1| Sequence 492 from Patent WO0222675
Length = 573
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 364 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 468
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 289 TKVSNMFGGTREKCVGCDKTVYPIEKV 369
>gb|CB263312.1|CB263312 26-E8880-008-014-D07-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D0714Q 5-PRIME, mRNA sequence
Length = 554
Score = 84.0 bits (177), Expect(2) = 2e-026
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 392 KVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 496
Score = 56.1 bits (116), Expect(2) = 2e-026
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 317 TKVSNMFGGTREKCVGCDKTVYPIEKV 397
>emb|X74319.1|ATLIM1 A.thaliana atl1 gene
Length = 1140
Score = 83.5 bits (176), Expect(2) = 1e-025
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -3 / +2
Query: 103 VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 905 VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 1006
Score = 56.1 bits (116), Expect(2) = 1e-025
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 690 TKVSNMFGGTREKCVGCDKTVYPIEKV 770
>gb|AY072143.1| Arabidopsis thaliana At1g10200 mRNA sequence
Length = 873
Score = 81.3 bits (171), Expect(2) = 2e-025
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -3 / +3
Query: 97 VNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 423 VNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 518
Score = 56.1 bits (116), Expect(2) = 2e-025
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 340 TKVSNMFGGTREKCVGCDKTVYPIEKV 420
>gb|AV831505.1|AV831505 AV831505 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-N21 5',
mRNA sequence
Length = 580
Score = 76.7 bits (161), Expect(2) = 4e-024
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = -3 / +1
Query: 94 NNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
N T+YH SCFKC HGGCTISPSNYIAHEGKL
Sbjct: 427 NGTLYHXSCFKCTHGGCTISPSNYIAHEGKL 519
Score = 56.1 bits (116), Expect(2) = 4e-024
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 341 TKVSNMFGGTREKCVGCDKTVYPIEKV 421
>gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1,
complete sequence
Length = 100746
Score = 83.5 bits (176), Expect(2) = 9e-024
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -3 / -1
Query: 103 VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 27243 VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 27142
Score = 56.1 bits (116), Expect(2) = 9e-024
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / -2
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 27458 TKVSNMFGGTREKCVGCDKTVYPIEKV 27378
>gb|CB254062.1|CB254062 81-E010933-019-003-B21-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768B213Q 5-PRIME, mRNA sequence
Length = 504
Score = 69.3 bits (145), Expect(2) = 4e-022
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYI 20
+V+VN T+YHKSCFKC HGGCTISPSNYI
Sbjct: 417 KVSVNGTLYHKSCFKCTHGGCTISPSNYI 503
Score = 56.1 bits (116), Expect(2) = 4e-022
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / +3
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 342 TKVSNMFGGTREKCVGCDKTVYPIEKV 422
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 83.5 bits (176), Expect(2) = 1e-021
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -3 / -3
Query: 103 VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
V+VN T+YHKSCFKC HGGCTISPSNYIAHEGKL
Sbjct: 3346705 VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKL 3346604
Score = 56.1 bits (116), Expect(2) = 1e-021
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3 / -1
Query: 262 TKVSSAFAGTREKCVGCSKTVYPTERV 182
TKVS+ F GTREKCVGC KTVYP E+V
Sbjct: 3346920 TKVSNMFGGTREKCVGCDKTVYPIEKV 3346840
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 923,063,656
Number of Sequences: 1013581
Number of extensions: 12048751
Number of successful extensions: 259587
Number of sequences better than 1.0e-020: 15
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 22590469356
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)