TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY089095.1| Arabidopsis thaliana clone 32647 mRNA, compl... 114 8e-030
gb|AC006429.4| Arabidopsis thaliana chromosome 2 clone F15K... 113 1e-029
ref|NM_179618.1| Arabidopsis thaliana lipid binding AT2G109... 113 1e-029
ref|NM_126828.2| Arabidopsis thaliana lipid binding AT2G109... 113 1e-029
gb|AY127013.1| Arabidopsis thaliana At2g10940/F15K19.1 mRNA... 113 1e-029
gb|AY065178.1| Arabidopsis thaliana unknown protein (At2g10... 113 1e-029
emb|BX819963.1|CNS0A9EV Arabidopsis thaliana Full-length cD... 113 1e-029
emb|BX819734.1|CNS0A9C2 Arabidopsis thaliana Full-length cD... 113 1e-029
emb|BX842009.1|CNS09YAA Arabidopsis thaliana Full-length cD... 113 1e-029
emb|AX412542.1| Sequence 306 from Patent WO0222675 113 1e-029
gb|BT000557.1| Arabidopsis thaliana unknown protein (At2g1... 113 1e-029
emb|AX589859.1| Sequence 41 from Patent WO02081695 113 1e-029
gb|CK120710.1|CK120710 206h01.p1 AtM1 Arabidopsis thaliana ... 113 1e-029
gb|CB260448.1|CB260448 94-E9408-012-002-L12-t7r MPIZ-ADIS-0... 113 1e-029
gb|CB074202.1|CB074202 EST02526 Early Ovule Development For... 113 1e-029
gb|AV785247.1|AV785247 AV785247 RAFL6 Arabidopsis thaliana ... 113 1e-029
gb|AV784780.1|AV784780 AV784780 RAFL6 Arabidopsis thaliana ... 113 1e-029
gb|BE039074.1|BE039074 AB09C08 AB Arabidopsis thaliana cDNA... 113 1e-029
gb|BU635069.1|BU635069 015E01 Infected Arabidopsis Leaf Ara... 113 1e-029
gb|AV518015.1|AV518015 AV518015 Arabidopsis thaliana aboveg... 113 1e-029
gb|CB262377.1|CB262377 63-E9779-008-018-N16-pbl2 MPIZ-ADIS-... 113 1e-029
gb|AV517984.1|AV517984 AV517984 Arabidopsis thaliana aboveg... 113 1e-029
gb|CK119820.1|CK119820 210m15.p1 AtM1 Arabidopsis thaliana ... 113 1e-029
gb|CK118736.1|CK118736 215p03.p1 AtM1 Arabidopsis thaliana ... 113 1e-029
gb|AV531385.1|AV531385 AV531385 Arabidopsis thaliana flower... 113 1e-029
gb|AV558854.1|AV558854 AV558854 Arabidopsis thaliana green ... 113 1e-029
gb|AV562031.1|AV562031 AV562031 Arabidopsis thaliana green ... 113 1e-029
gb|AV532760.1|AV532760 AV532760 Arabidopsis thaliana flower... 113 1e-029
gb|AV535750.1|AV535750 AV535750 Arabidopsis thaliana flower... 113 1e-029
gb|AV522424.1|AV522424 AV522424 Arabidopsis thaliana aboveg... 113 1e-029
gb|AV530847.1|AV530847 AV530847 Arabidopsis thaliana flower... 113 1e-029
gb|AV556187.1|AV556187 AV556187 Arabidopsis thaliana green ... 113 1e-029
gb|AV532553.1|AV532553 AV532553 Arabidopsis thaliana flower... 113 1e-029
gb|CK117876.1|CK117876 209k14.p1 AtM1 Arabidopsis thaliana ... 113 4e-029
gb|AV522604.1|AV522604 AV522604 Arabidopsis thaliana aboveg... 110 1e-028
gb|AV439792.1|AV439792 AV439792 Arabidopsis thaliana above-... 108 2e-028
gb|AV519015.1|AV519015 AV519015 Arabidopsis thaliana aboveg... 108 4e-028
gb|AV557669.1|AV557669 AV557669 Arabidopsis thaliana green ... 104 8e-027
gb|AV533036.1|AV533036 AV533036 Arabidopsis thaliana flower... 104 8e-027
gb|AV535436.1|AV535436 AV535436 Arabidopsis thaliana flower... 104 8e-027
gb|BP587628.1|BP587628 BP587628 RAFL15 Arabidopsis thaliana... 103 1e-026
gb|AV820540.1|AV820540 AV820540 RAFL11 Arabidopsis thaliana... 100 2e-025
dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosom... 106 8e-025
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 110 1e-024
gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis tha... 110 1e-024
ref|NM_104929.2| Arabidopsis thaliana lipid binding AT1G625... 110 1e-024
gb|AY087579.1| Arabidopsis thaliana clone 36784 mRNA, compl... 110 1e-024
gb|AY045962.1| Arabidopsis thaliana putative proline-rich c... 110 1e-024
gb|AY079346.1| Arabidopsis thaliana putative proline-rich c... 110 1e-024
gb|AV784499.1|AV784499 AV784499 RAFL5 Arabidopsis thaliana ... 110 1e-024
gb|AV557049.1|AV557049 AV557049 Arabidopsis thaliana green ... 110 1e-024
gb|AA605404.1|AA605404 30440 Lambda-PRL2 Arabidopsis thalia... 110 1e-024
gb|CF774284.1|CF774284 AG_FSL_30D06 Arabidopsis ag-1 35S:AG... 110 1e-024
gb|CF774211.1|CF774211 AG_FSL_29C03 Arabidopsis ag-1 35S:AG... 110 1e-024
gb|H37231.1|H37231 15360 Lambda-PRL2 Arabidopsis thaliana c... 107 3e-024
gb|AV530835.1|AV530835 AV530835 Arabidopsis thaliana flower... 95 4e-024
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 113 5e-024
gb|AV517905.1|AV517905 AV517905 Arabidopsis thaliana aboveg... 93 1e-023
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 110 5e-023
gb|AV531427.1|AV531427 AV531427 Arabidopsis thaliana flower... 89 2e-022
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 106 8e-022
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 106 8e-022
>gb|AY089095.1| Arabidopsis thaliana clone 32647 mRNA, complete sequence
Length = 1115
Score = 114 bits (243), Expect(2) = 8e-030
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 633 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEIEAAACLCTTLK 788
Score = 38.6 bits (78), Expect(2) = 8e-030
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 843 TCGKNPPPGYTCSI* 887
>gb|AC006429.4| Arabidopsis thaliana chromosome 2 clone F15K19 map mi421, complete
sequence
Length = 94875
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 2507 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 2352
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 2297 TCGKNPPPGYTCSI* 2253
>ref|NM_179618.1| Arabidopsis thaliana lipid binding AT2G10940 transcript variant
AT2G10940.2 mRNA, complete cds
Length = 1692
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 690 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 845
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 900 TCGKNPPPGYTCSI* 944
>ref|NM_126828.2| Arabidopsis thaliana lipid binding AT2G10940 transcript variant
AT2G10940.1 mRNA, complete cds
Length = 1338
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 690 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 845
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 900 TCGKNPPPGYTCSI* 944
>gb|AY127013.1| Arabidopsis thaliana At2g10940/F15K19.1 mRNA, complete cds
Length = 1162
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 638 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 793
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 848 TCGKNPPPGYTCSI* 892
>gb|AY065178.1| Arabidopsis thaliana unknown protein (At2g10940; F15K19.1) mRNA,
complete cds
Length = 1128
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 643 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 798
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 853 TCGKNPPPGYTCSI* 897
>emb|BX819963.1|CNS0A9EV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS54ZE09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1124
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 625 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 780
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 835 TCGKNPPPGYTCSI* 879
>emb|BX819734.1|CNS0A9C2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS21ZB01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1085
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 621 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 776
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 831 TCGKNPPPGYTCSI* 875
>emb|BX842009.1|CNS09YAA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS12ZH09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 956
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 625 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 780
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 835 TCGKNPPPGYTCSI* 879
>emb|AX412542.1| Sequence 306 from Patent WO0222675
Length = 876
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 622 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 777
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 832 TCGKNPPPGYTCSI* 876
>gb|BT000557.1| Arabidopsis thaliana unknown protein (At2g10940/F15K19.1) mRNA,
complete cds
Length = 876
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 622 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 777
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 832 TCGKNPPPGYTCSI* 876
>emb|AX589859.1| Sequence 41 from Patent WO02081695
Length = 876
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 622 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 777
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 832 TCGKNPPPGYTCSI* 876
>gb|CK120710.1|CK120710 206h01.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011H01206
5-PRIME, mRNA sequence
Length = 819
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 342 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 497
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 552 TCGKNPPPGYTCSI* 596
>gb|CB260448.1|CB260448 94-E9408-012-002-L12-t7r MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769L122Q 5-PRIME, mRNA sequence
Length = 766
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 312 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 467
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 522 TCGKNPPPGYTCSI* 566
>gb|CB074202.1|CB074202 EST02526 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D3G1 similar to unknown
protein, mRNA sequence
Length = 718
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 492 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 337
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 282 TCGKNPPPGYTCSI* 238
>gb|AV785247.1|AV785247 AV785247 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-13-I04 3',
mRNA sequence
Length = 704
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 484 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 329
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 274 TCGKNPPPGYTCSI* 230
>gb|AV784780.1|AV784780 AV784780 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-08-D09 3',
mRNA sequence
Length = 680
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 484 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 329
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 274 TCGKNPPPGYTCSI* 230
>gb|BE039074.1|BE039074 AB09C08 AB Arabidopsis thaliana cDNA 5' similar to proline-rich
protein, mRNA sequence
Length = 676
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 524 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 369
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 314 TCGKNPPPGYTCSI* 270
>gb|BU635069.1|BU635069 015E01 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 643
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 377 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 532
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 587 TCGKNPPPGYTCSI* 631
>gb|AV518015.1|AV518015 AV518015 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD05c04F 3', mRNA
sequence
Length = 605
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 470 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 315
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 260 TCGKNPPPGYTCSI* 216
>gb|CB262377.1|CB262377 63-E9779-008-018-N16-pbl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767N1618Q 5-PRIME, mRNA sequence
Length = 600
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 66 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 221
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 276 TCGKNPPPGYTCSI* 320
>gb|AV517984.1|AV517984 AV517984 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD04e12F 3', mRNA
sequence
Length = 582
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 557 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 402
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 347 TCGKNPPPGYTCSI* 303
>gb|CK119820.1|CK119820 210m15.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011M15210
5-PRIME, mRNA sequence
Length = 575
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 153 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 308
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 363 TCGKNPPPGYTCSI* 407
>gb|CK118736.1|CK118736 215p03.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P03215
5-PRIME, mRNA sequence
Length = 574
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 177 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 332
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 387 TCGKNPPPGYTCSI* 431
>gb|AV531385.1|AV531385 AV531385 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB020h04F 3', mRNA sequence
Length = 557
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 483 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 328
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 273 TCGKNPPPGYTCSI* 229
>gb|AV558854.1|AV558854 AV558854 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ107a09F 3', mRNA sequence
Length = 553
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 517 CPIDALKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 362
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 307 TCGKNPPPGYTCSI* 263
>gb|AV562031.1|AV562031 AV562031 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ162g05F 3', mRNA sequence
Length = 531
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 522 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 367
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 312 TCGKNPPPGYTCSI* 268
>gb|AV532760.1|AV532760 AV532760 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB049e08F 3', mRNA sequence
Length = 527
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 483 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 328
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 273 TCGKNPPPGYTCSI* 229
>gb|AV535750.1|AV535750 AV535750 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB101e08F 3', mRNA sequence
Length = 527
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 522 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 367
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 312 TCGKNPPPGYTCSI* 268
>gb|AV522424.1|AV522424 AV522424 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ79f05F 3', mRNA
sequence
Length = 526
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 470 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 315
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 260 TCGKNPPPGYTCSI* 216
>gb|AV530847.1|AV530847 AV530847 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB010d05F 3', mRNA sequence
Length = 526
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 432 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 277
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 222 TCGKNPPPGYTCSI* 178
>gb|AV556187.1|AV556187 AV556187 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ036e05F 3', mRNA sequence
Length = 521
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 484 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 329
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 274 TCGKNPPPGYTCSI* 230
>gb|AV532553.1|AV532553 AV532553 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB044d02F 3', mRNA sequence
Length = 494
Score = 113 bits (242), Expect(2) = 1e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 409 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 254
Score = 38.6 bits (78), Expect(2) = 1e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 199 TCGKNPPPGYTCSI* 155
>gb|CK117876.1|CK117876 209k14.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011K14209
5-PRIME, mRNA sequence
Length = 790
Score = 113 bits (242), Expect(2) = 4e-029
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 408 CPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 563
Score = 36.8 bits (74), Expect(2) = 4e-029
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGY+C++*
Sbjct: 618 TCGKNPPPGYSCSI* 662
>gb|AV522604.1|AV522604 AV522604 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ83e10F 3', mRNA
sequence
Length = 498
Score = 110 bits (234), Expect(2) = 1e-028
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVDLL GLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 470 CPIDTLKLGACVDLLEGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 315
Score = 38.6 bits (78), Expect(2) = 1e-028
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 260 TCGKNPPPGYTCSI* 216
>gb|AV439792.1|AV439792 AV439792 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD17a11_f 3', mRNA
sequence
Length = 542
Score = 108 bits (231), Expect(2) = 2e-028
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +1 / -1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLGACVD+LGGLV IGLGD VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 530 CPIDALKLGACVDVLGGLVKIGLGDAAVNKCCPLLKGLVEVEAAACLCTTLK 375
Score = 39.1 bits (79), Expect(2) = 2e-028
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1 / -1
Query: 250 TCGKTPPPGYTCTV* 294
TCGK+PPPGYTC++*
Sbjct: 320 TCGKSPPPGYTCSI* 276
>gb|AV519015.1|AV519015 AV519015 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD45h09F 3', mRNA
sequence
Length = 524
Score = 108 bits (230), Expect(2) = 4e-028
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +1 / -3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D++KLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+E CLCTT+K
Sbjct: 483 CPIDTMKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEPLACLCTTLK 328
Score = 38.6 bits (78), Expect(2) = 4e-028
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -3
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 273 TCGKNPPPGYTCSI* 229
>gb|AV557669.1|AV557669 AV557669 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ074g12F 3', mRNA sequence
Length = 526
Score = 104 bits (221), Expect(2) = 8e-027
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +1 / -2
Query: 52 SLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 525 TLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 382
Score = 38.6 bits (78), Expect(2) = 8e-027
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 327 TCGKNPPPGYTCSI* 283
>gb|AV533036.1|AV533036 AV533036 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB054g04F 3', mRNA sequence
Length = 488
Score = 104 bits (221), Expect(2) = 8e-027
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +1 / -2
Query: 52 SLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 487 TLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 344
Score = 38.6 bits (78), Expect(2) = 8e-027
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 289 TCGKNPPPGYTCSI* 245
>gb|AV535436.1|AV535436 AV535436 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096c12F 3', mRNA sequence
Length = 421
Score = 104 bits (221), Expect(2) = 8e-027
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +1 / -2
Query: 52 SLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
+LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 420 TLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 277
Score = 38.6 bits (78), Expect(2) = 8e-027
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 222 TCGKNPPPGYTCSI* 178
>gb|BP587628.1|BP587628 BP587628 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-43-E24 3',
mRNA sequence
Length = 421
Score = 103 bits (220), Expect(2) = 1e-026
Identities = 40/47 (85%), Positives = 44/47 (93%)
Frame = +1 / -1
Query: 55 LKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
LKLGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 421 LKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 281
Score = 38.6 bits (78), Expect(2) = 1e-026
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 225 TCGKNPPPGYTCSI* 181
>gb|AV820540.1|AV820540 AV820540 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-10-O19 3',
mRNA sequence
Length = 420
Score = 99.6 bits (211), Expect(2) = 2e-025
Identities = 38/45 (84%), Positives = 42/45 (93%)
Frame = +1 / -2
Query: 61 LGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
LGACVDLLGGLV IGLGDP VNKCCP+L+GLVE+EAA CLCTT+K
Sbjct: 419 LGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLK 285
Score = 38.6 bits (78), Expect(2) = 2e-025
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTCTV* 294
TCGK PPPGYTC++*
Sbjct: 230 TCGKNPPPGYTCSI* 186
>dbj|AP001306.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MKA23
Length = 70100
Score = 106 bits (226), Expect(2) = 8e-025
Identities = 40/52 (76%), Positives = 46/52 (88%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP D+LKLG+CVDLLGGLVHIG+G KCCPV+EGLV+L+AAVCLCTTIK
Sbjct: 12415 CPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIK 12260
Score = 29.5 bits (58), Expect(2) = 8e-025
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / -2
Query: 253 CGKTPPPGYTC 285
CGK PPPG+ C
Sbjct: 12202 CGKNPPPGFKC 12170
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 7374130 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 7374285
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 7374340 TCGINPPSGFVC 7374375
>gb|AC005698.1|AC005698 Genomic sequence for Arabidopsis thaliana BAC T3P18 from Chromosome 1,
complete sequence
Length = 97054
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 23802 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 23957
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 24012 TCGINPPSGFVC 24047
>ref|NM_104929.2| Arabidopsis thaliana lipid binding AT1G62500 mRNA, complete cds
Length = 1458
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / +2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 770 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 925
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +2
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 980 TCGINPPSGFVC 1015
>gb|AY087579.1| Arabidopsis thaliana clone 36784 mRNA, complete sequence
Length = 1134
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / +3
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 687 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 842
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +3
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 897 TCGINPPSGFVC 932
>gb|AY045962.1| Arabidopsis thaliana putative proline-rich cell wall protein
(At1g62500) mRNA, complete cds
Length = 1068
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 643 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 798
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 853 TCGINPPSGFVC 888
>gb|AY079346.1| Arabidopsis thaliana putative proline-rich cell wall protein
(At1g62500) mRNA, complete cds
Length = 925
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / +1
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 634 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 789
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 844 TCGINPPSGFVC 879
>gb|AV784499.1|AV784499 AV784499 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-19-P24 3',
mRNA sequence
Length = 714
Score = 110 bits (235), Expect(2) = 1e-024
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = +1 / -2
Query: 40 CPADSLKLGACVDLLGGLVHIGLGDPVVNKCCPVLEGLVELEAAVCLCTTIK 195
CP ++LKLGACVD+LGGL+HIGLG+PV N CCPVL+GL+ELEAAVCLCTTI+
Sbjct: 410 CPINALKLGACVDVLGGLIHIGLGNPVENVCCPVLQGLLELEAAVCLCTTIR 255
Score = 24.9 bits (48), Expect(2) = 1e-024
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / -2
Query: 250 TCGKTPPPGYTC 285
TCG PP G+ C
Sbjct: 200 TCGINPPSGFVC 165
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,238,323,603
Number of Sequences: 1013581
Number of extensions: 15795760
Number of successful extensions: 123230
Number of sequences better than 1.0e-020: 75
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 45796874244
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)