TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV519654.1|AV519654 AV519654 Arabidopsis thaliana aboveg... 141 2e-032
gb|AV555052.1|AV555052 AV555052 Arabidopsis thaliana green ... 141 2e-032
gb|AY120714.1| Arabidopsis thaliana putative cinnamoyl-CoA ... 141 2e-032
gb|BT000055.1| Arabidopsis thaliana putative cinnamoyl-CoA ... 141 2e-032
gb|AY084584.1| Arabidopsis thaliana clone 11254 mRNA, compl... 141 2e-032
emb|BX821470.1|CNS0A86H Arabidopsis thaliana Full-length cD... 141 2e-032
emb|BX820817.1|CNS0A8PQ Arabidopsis thaliana Full-length cD... 141 2e-032
ref|NM_128919.3| Arabidopsis thaliana cinnamoyl-CoA reducta... 141 2e-032
gb|AV783786.1|AV783786 AV783786 RAFL5 Arabidopsis thaliana ... 138 1e-031
emb|BX820359.1|CNS0A8MB Arabidopsis thaliana Full-length cD... 137 3e-031
gb|AY093143.1| Arabidopsis thaliana putative cinnamoyl-CoA ... 136 7e-031
emb|AX412482.1| Sequence 246 from Patent WO0222675 136 7e-031
gb|BT008718.1| Arabidopsis thaliana At2g33600 gene, complet... 136 7e-031
ref|NM_128920.2| Arabidopsis thaliana cinnamoyl-CoA reducta... 136 7e-031
gb|AV783892.1|AV783892 AV783892 RAFL5 Arabidopsis thaliana ... 133 5e-030
gb|AV789961.1|AV789961 AV789961 RAFL6 Arabidopsis thaliana ... 133 5e-030
gb|AV522467.1|AV522467 AV522467 Arabidopsis thaliana aboveg... 130 3e-029
gb|AV534631.1|AV534631 AV534631 Arabidopsis thaliana flower... 125 1e-027
gb|BP579647.1|BP579647 BP579647 RAFL14 Arabidopsis thaliana... 115 1e-024
gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9... 88 1e-023
ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reducta... 80 5e-022
gb|AI996209.1|AI996209 701550601 A. thaliana, Columbia Col-... 78 2e-021
>gb|AV519654.1|AV519654 AV519654 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD64d02F 3', mRNA
sequence
Length = 590
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / -1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 524 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 345
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 344 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 192
>gb|AV555052.1|AV555052 AV555052 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ002g02F 3', mRNA sequence
Length = 534
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / -2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 473 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 294
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 293 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 141
>gb|AY120714.1| Arabidopsis thaliana putative cinnamoyl-CoA reductase (At2g33590)
mRNA, complete cds
Length = 1176
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 625 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 804
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 805 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 957
>gb|BT000055.1| Arabidopsis thaliana putative cinnamoyl-CoA reductase (At2g33590)
mRNA, complete cds
Length = 1090
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 613 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 792
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 793 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 945
>gb|AY084584.1| Arabidopsis thaliana clone 11254 mRNA, complete sequence
Length = 1258
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 700 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 879
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 880 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 1032
>emb|BX821470.1|CNS0A86H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZB12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1226
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 691 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 870
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 871 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 1023
>emb|BX820817.1|CNS0A8PQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH71ZE02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1400
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / +2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 809 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 988
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 989 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 1141
>ref|NM_128919.3| Arabidopsis thaliana cinnamoyl-CoA reductase AT2G33590 mRNA, complete
cds
Length = 1557
Score = 141 bits (302), Expect = 2e-032
Identities = 58/111 (52%), Positives = 80/111 (72%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 967 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 1146
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 1147 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 1299
>gb|AV783786.1|AV783786 AV783786 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-13-B15 3',
mRNA sequence
Length = 578
Score = 138 bits (296), Expect = 1e-031
Identities = 56/108 (51%), Positives = 78/108 (72%)
Frame = -3 / -3
Query: 611 IILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILK 432
++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++ LK
Sbjct: 555 VLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVEKLK 376
Query: 431 TLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 375 SFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLVDSVESYR 232
>emb|BX820359.1|CNS0A8MB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH25ZH07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1406
Score = 137 bits (294), Expect = 3e-031
Identities = 56/111 (50%), Positives = 78/111 (70%)
Frame = -3 / +2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++
Sbjct: 968 SSLVLLKLLKEGFETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVE 1147
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+ YP Y YPK +++ + SSEKLQKLGW+++P+EE+L D+ E Y+
Sbjct: 1148 KLKSFYPHYNYPKKYIDAEDRVKVSSEKLQKLGWTYRPLEETLPDSAERYR 1300
>gb|AY093143.1| Arabidopsis thaliana putative cinnamoyl-CoA reductase (At2g33600)
mRNA, complete cds
Length = 1286
Score = 136 bits (291), Expect = 7e-031
Identities = 57/111 (51%), Positives = 78/111 (70%)
Frame = -3 / +3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ E+ N R++VDVRDVA ALLL YEK EA GRYIC H ++ ++
Sbjct: 720 SSLVLLKLLKEGYESRNNQERHLVDVRDVAQALLLVYEKAEAEGRYICIGHTVREQEVAE 899
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+LY +Y YPK ++E D SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 900 KLKSLYLNYNYPKRYIEADGKVKVSSEKLQKLGWTYRPLEETLVDSVESYR 1052
>emb|AX412482.1| Sequence 246 from Patent WO0222675
Length = 966
Score = 136 bits (291), Expect = 7e-031
Identities = 57/111 (51%), Positives = 78/111 (70%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ E+ N R++VDVRDVA ALLL YEK EA GRYIC H ++ ++
Sbjct: 613 SSLVLLKLLKEGYESRNNQERHLVDVRDVAQALLLVYEKAEAEGRYICIGHTVREQEVAE 792
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+LY +Y YPK ++E D SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 793 KLKSLYLNYNYPKRYIEADGKVKVSSEKLQKLGWTYRPLEETLVDSVESYR 945
>gb|BT008718.1| Arabidopsis thaliana At2g33600 gene, complete cds
Length = 966
Score = 136 bits (291), Expect = 7e-031
Identities = 57/111 (51%), Positives = 78/111 (70%)
Frame = -3 / +1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ E+ N R++VDVRDVA ALLL YEK EA GRYIC H ++ ++
Sbjct: 613 SSLVLLKLLKEGYESRNNQERHLVDVRDVAQALLLVYEKAEAEGRYICIGHTVREQEVAE 792
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+LY +Y YPK ++E D SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 793 KLKSLYLNYNYPKRYIEADGKVKVSSEKLQKLGWTYRPLEETLVDSVESYR 945
>ref|NM_128920.2| Arabidopsis thaliana cinnamoyl-CoA reductase AT2G33600 mRNA, complete
cds
Length = 1286
Score = 136 bits (291), Expect = 7e-031
Identities = 57/111 (51%), Positives = 78/111 (70%)
Frame = -3 / +3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS ++L+ E+ N R++VDVRDVA ALLL YEK EA GRYIC H ++ ++
Sbjct: 720 SSLVLLKLLKEGYESRNNQERHLVDVRDVAQALLLVYEKAEAEGRYICIGHTVREQEVAE 899
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
LK+LY +Y YPK ++E D SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 900 KLKSLYLNYNYPKRYIEADGKVKVSSEKLQKLGWTYRPLEETLVDSVESYR 1052
>gb|AV783892.1|AV783892 AV783892 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-14-E15 3',
mRNA sequence
Length = 496
Score = 133 bits (285), Expect = 5e-030
Identities = 52/91 (57%), Positives = 70/91 (76%)
Frame = -3 / -2
Query: 560 RNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDDV 381
R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++ LK+ YP Y YPK +++ +
Sbjct: 489 RHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVEKLKSFYPHYNYPKKYIDAED 310
Query: 380 NSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 309 RVKVSSEKLQKLGWTYRPLEETLVDSVESYR 217
>gb|AV789961.1|AV789961 AV789961 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-86-J08 3',
mRNA sequence
Length = 426
Score = 133 bits (285), Expect = 5e-030
Identities = 52/91 (57%), Positives = 70/91 (76%)
Frame = -3 / -1
Query: 560 RNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDDV 381
R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++ LK+ YP Y YPK +++ +
Sbjct: 417 RHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVEKLKSFYPHYNYPKKYIDAED 238
Query: 380 NSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 237 RVKVSSEKLQKLGWTYRPLEETLVDSVESYR 145
>gb|AV522467.1|AV522467 AV522467 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ80f12F 3', mRNA
sequence
Length = 555
Score = 130 bits (279), Expect = 3e-029
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -3 / -3
Query: 560 RNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDDV 381
R++VDVRDVA ALLL YEK EA GRYIC H ++ ++ LK+LY +Y YPK ++E D
Sbjct: 484 RHLVDVRDVAQALLLVYEKAEAEGRYICIGHTVREQEVAEKLKSLYLNYNYPKRYIEADG 305
Query: 380 NSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 304 KVKVSSEKLQKLGWTYRPLEETLVDSVESYR 212
>gb|AV534631.1|AV534631 AV534631 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB083d03F 3', mRNA sequence
Length = 456
Score = 125 bits (267), Expect = 1e-027
Identities = 49/86 (56%), Positives = 65/86 (75%)
Frame = -3 / -2
Query: 545 VRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDDVNSVYS 366
VRDVA ALLL YEK EA GRYIC+SH +K ++ LK+ YP Y YPK +++ + S
Sbjct: 455 VRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVEKLKSFYPHYNYPKKYIDAEDRVKVS 276
Query: 365 SEKLQKLGWSFKPIEESLRDTVESYK 288
SEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 275 SEKLQKLGWTYRPLEETLVDSVESYR 198
>gb|BP579647.1|BP579647 BP579647 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-23-J08 3',
mRNA sequence
Length = 500
Score = 115 bits (246), Expect = 1e-024
Identities = 44/91 (48%), Positives = 64/91 (70%)
Frame = -3 / -3
Query: 560 RNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPKNFVEDDV 381
R++VDV + + L YEK EA GRYIC+SH +K ++ LK+ YP Y YPK +++ +
Sbjct: 492 RHLVDVPQGSSSFTLVYEKAEAEGRYICTSHTVKKEIVVEKLKSFYPHYNYPKKYIDPED 313
Query: 380 NSVYSSEKLQKLGWSFKPIEESLRDTVESYK 288
SSEKLQKLGW+++P+EE+L D+VE Y+
Sbjct: 312 RVKVSSEKLQKLGWTYRPLEETLVDSVERYR 220
>gb|AC002332.3| Arabidopsis thaliana chromosome 2 clone F4P9 map ve015, complete sequence
Length = 152593
Score = 88.1 bits (186), Expect(2) = 1e-023
Identities = 39/72 (54%), Positives = 48/72 (66%)
Frame = -3 / +2
Query: 581 ETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPK 402
ET +N R++VDVRDVA ALLL YEK EA GRYIC+SH +K ++ LK+ YP Y YPK
Sbjct: 129689 ETRDNQERHLVDVRDVAQALLLVYEKAEAEGRYICTSHTVKEEIVVEKLKSFYPHYNYPK 129868
Query: 401 NFVEDDVNSVYS 366
V S+ S
Sbjct: 129869 K*VNKQHISLLS 129904
Score = 52.8 bits (109), Expect(2) = 1e-023
Identities = 19/27 (70%), Positives = 26/27 (96%)
Frame = -3 / +1
Query: 368 SSEKLQKLGWSFKPIEESLRDTVESYK 288
SSEKLQKLGW+++P+EE+L D+VESY+
Sbjct: 130120 SSEKLQKLGWTYRPLEETLVDSVESYR 130200
>ref|NM_106297.1| Arabidopsis thaliana cinnamoyl-CoA reductase AT1G76470 mRNA,
complete cds
Length = 983
Score = 79.9 bits (168), Expect(2) = 5e-022
Identities = 34/77 (44%), Positives = 52/77 (67%)
Frame = -3 / +3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS +L++ G +++ + +VDVRDVADALLL YE EA+GRYIC+SH++ ++
Sbjct: 618 SSLGLLKFIKGGIKSLLSDELYLVDVRDVADALLLVYENREATGRYICNSHSLYTDSLME 797
Query: 440 ILKTLYPSYPYPKNFVE 390
LK +YP +P++F E
Sbjct: 798 KLKNMYPKRNFPESFTE 848
Score = 46.4 bits (95), Expect(2) = 5e-022
Identities = 17/32 (53%), Positives = 26/32 (81%)
Frame = -3 / +3
Query: 368 SSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
S+EKL+ LGW F+P+EE++ D+V S++A G L
Sbjct: 876 SAEKLKNLGWKFRPLEETIDDSVVSFEAAGDL 971
>gb|AI996209.1|AI996209 701550601 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550601, mRNA sequence
Length = 583
Score = 78.0 bits (164), Expect(2) = 2e-021
Identities = 32/73 (43%), Positives = 49/73 (67%)
Frame = -3 / -3
Query: 608 ILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKT 429
+L++ G +++ + +VDVRDVADALLL YE EA+GRYIC+SH++ ++ LK
Sbjct: 500 LLKFIKGGIKSLLSDEXYLVDVRDVADALLLVYENREATGRYICNSHSLYTDSLMEKLKN 321
Query: 428 LYPSYPYPKNFVE 390
YP +P++F E
Sbjct: 320 XYPKRNFPESFTE 282
Score = 46.4 bits (95), Expect(2) = 2e-021
Identities = 17/32 (53%), Positives = 26/32 (81%)
Frame = -3 / -3
Query: 368 SSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
S+EKL+ LGW F+P+EE++ D+V S++A G L
Sbjct: 254 SAEKLKNLGWKFRPLEETIDDSVVSFEAAGDL 159
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,302,390,366
Number of Sequences: 1013581
Number of extensions: 17092288
Number of successful extensions: 178492
Number of sequences better than 1.0e-020: 24
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37332233585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)