TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.12
(621 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-... 103 6e-021
gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana ... 103 6e-021
gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana ... 103 6e-021
gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana ... 103 6e-021
gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana... 103 6e-021
gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana... 103 6e-021
gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana... 103 6e-021
gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana... 103 6e-021
gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana... 103 6e-021
gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana... 103 6e-021
gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana... 103 6e-021
gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana... 103 6e-021
gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana... 103 6e-021
gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana... 103 6e-021
gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana ... 103 6e-021
gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana ... 103 6e-021
gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana... 103 6e-021
gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana... 103 6e-021
gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana... 103 6e-021
gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana... 103 6e-021
gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana... 103 6e-021
gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complet... 103 6e-021
emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cD... 103 6e-021
emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cD... 103 6e-021
ref|NM_111548.2| Arabidopsis thaliana structural constituen... 103 6e-021
ref|NM_111550.2| Arabidopsis thaliana structural constituen... 103 6e-021
ref|NM_001035573.1| Arabidopsis thaliana structural constit... 103 6e-021
ref|NM_001035574.1| Arabidopsis thaliana structural constit... 103 6e-021
>gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550514, mRNA sequence
Length = 378
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 325 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 185
>gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-77-H24 3',
mRNA sequence
Length = 415
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 347 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-J04 3',
mRNA sequence
Length = 408
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 352 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 212
>gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-87-H13 3',
mRNA sequence
Length = 411
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 347 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-B03 3',
mRNA sequence
Length = 394
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -1
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 349 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 209
>gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-C11 3',
mRNA sequence
Length = 430
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 351 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-H11 3',
mRNA sequence
Length = 403
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 347 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-P17 3',
mRNA sequence
Length = 394
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 351 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-46-C14 3',
mRNA sequence
Length = 425
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 349 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 209
>gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-L02 3',
mRNA sequence
Length = 385
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 350 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 210
>gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-H03 3',
mRNA sequence
Length = 448
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 347 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-38-O20 3',
mRNA sequence
Length = 368
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 316 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 176
>gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-M01 3',
mRNA sequence
Length = 420
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 347 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-12-P09 3',
mRNA sequence
Length = 345
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 317 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 177
>gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-56-H14 3',
mRNA sequence
Length = 410
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 348 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 208
>gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-P17 3',
mRNA sequence
Length = 409
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / -3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 347 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-N16 5',
mRNA sequence
Length = 389
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +1
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 76 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 216
>gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-F17 5',
mRNA sequence
Length = 403
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 74 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 214
>gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-N21 5',
mRNA sequence
Length = 394
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +1
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 73 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 213
>gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-76-J11 5',
mRNA sequence
Length = 383
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 45 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 185
>gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-J12 5',
mRNA sequence
Length = 378
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 74 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 214
>gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complete sequence
Length = 421
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +1
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 76 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 216
>emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH35ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 360
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +1
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 34 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 174
>emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL94ZE11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 322
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 6 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 146
>ref|NM_111548.2| Arabidopsis thaliana structural constituent of ribosome AT3G06680
mRNA, complete cds
Length = 254
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 69 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 209
>ref|NM_111550.2| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.1 mRNA, complete cds
Length = 427
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 77 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 217
>ref|NM_001035573.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.2 mRNA, complete cds
Length = 405
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +2
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 56 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 196
>ref|NM_001035574.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.3 mRNA, complete cds
Length = 400
Score = 103 bits (219), Expect = 6e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +1 / +3
Query: 88 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 228
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 51 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 191
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,090,418,003
Number of Sequences: 1013581
Number of extensions: 13796149
Number of successful extensions: 149128
Number of sequences better than 1.0e-020: 28
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 37332233585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)