TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana... 109 8e-023
gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana... 108 1e-022
gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana... 108 1e-022
gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-... 107 2e-022
gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana ... 107 2e-022
gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana ... 107 2e-022
gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana ... 107 2e-022
gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana... 107 2e-022
gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana... 107 2e-022
gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana... 107 2e-022
gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana... 107 2e-022
gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana... 107 2e-022
gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana... 107 2e-022
gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana ... 107 2e-022
gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana ... 107 2e-022
gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana... 107 2e-022
gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana... 107 2e-022
gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana... 107 2e-022
ref|NM_111550.2| Arabidopsis thaliana structural constituen... 107 2e-022
gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana... 107 3e-022
gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana... 106 4e-022
gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana... 106 4e-022
gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana... 106 5e-022
gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana... 105 7e-022
gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana... 105 1e-021
gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana... 105 1e-021
gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana... 105 1e-021
gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana... 105 1e-021
gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana... 105 1e-021
gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complet... 105 1e-021
emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cD... 105 1e-021
emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cD... 105 1e-021
ref|NM_111548.2| Arabidopsis thaliana structural constituen... 105 1e-021
ref|NM_001035573.1| Arabidopsis thaliana structural constit... 105 1e-021
gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana... 105 1e-021
gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana... 104 2e-021
gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana... 104 3e-021
ref|NM_001035574.1| Arabidopsis thaliana structural constit... 104 3e-021
gb|BP798665.1|BP798665 BP798665 RAFL14 Arabidopsis thaliana... 103 5e-021
gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana... 103 5e-021
gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana... 102 7e-021
>gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-L02 3',
mRNA sequence
Length = 385
Score = 109 bits (232), Expect = 8e-023
Identities = 44/57 (77%), Positives = 48/57 (84%)
Frame = +3 / -3
Query: 84 SRSSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
S +SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 380 SSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 210
>gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-F17 5',
mRNA sequence
Length = 403
Score = 108 bits (231), Expect = 1e-022
Identities = 44/59 (74%), Positives = 48/59 (81%)
Frame = +3 / +2
Query: 78 RCSRSSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
R +SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 38 RVRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 214
>gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-13-D20 5',
mRNA sequence
Length = 388
Score = 108 bits (230), Expect = 1e-022
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +3 / +2
Query: 75 IRCSRSSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+R +SL EMAKSKNHT HNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 38 VRARSTSLSQYSEMAKSKNHTGHNQSGKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 217
>gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550514, mRNA sequence
Length = 378
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 349 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 185
>gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-77-H24 3',
mRNA sequence
Length = 415
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-J04 3',
mRNA sequence
Length = 408
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 376 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 212
>gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-87-H13 3',
mRNA sequence
Length = 411
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-B03 3',
mRNA sequence
Length = 394
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 373 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 209
>gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-C11 3',
mRNA sequence
Length = 430
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 375 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-P17 3',
mRNA sequence
Length = 394
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 375 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-46-C14 3',
mRNA sequence
Length = 425
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 373 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 209
>gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-H03 3',
mRNA sequence
Length = 448
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-M01 3',
mRNA sequence
Length = 420
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-56-H14 3',
mRNA sequence
Length = 410
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 372 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 208
>gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-P17 3',
mRNA sequence
Length = 409
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-N16 5',
mRNA sequence
Length = 389
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / +1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 52 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 216
>gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-N21 5',
mRNA sequence
Length = 394
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / +1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 49 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 213
>gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-J12 5',
mRNA sequence
Length = 378
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / +2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 50 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 214
>ref|NM_111550.2| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.1 mRNA, complete cds
Length = 427
Score = 107 bits (229), Expect = 2e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / +2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 53 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 217
>gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-H11 3',
mRNA sequence
Length = 403
Score = 107 bits (228), Expect = 3e-022
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLPQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
>gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-H11 3',
mRNA sequence
Length = 428
Score = 106 bits (227), Expect = 4e-022
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = +3 / -3
Query: 84 SRSSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS 251
S +SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+
Sbjct: 381 SSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYA 214
>gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-39-C01 3',
mRNA sequence
Length = 424
Score = 106 bits (227), Expect = 4e-022
Identities = 43/55 (78%), Positives = 46/55 (83%)
Frame = +3 / -2
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP RHR T T+GMDPKFLRN RY+R
Sbjct: 375 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPSRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-35-C04 3',
mRNA sequence
Length = 434
Score = 106 bits (226), Expect = 5e-022
Identities = 43/55 (78%), Positives = 46/55 (83%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY R
Sbjct: 378 TSLSHYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYPR 214
>gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-39-I18 5',
mRNA sequence
Length = 394
Score = 105 bits (225), Expect = 7e-022
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3 / +1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHT HNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 52 TSLSQYSEMAKSKNHTVHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 216
>gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-38-O20 3',
mRNA sequence
Length = 368
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / -2
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 319 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 176
>gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-40-J12 3',
mRNA sequence
Length = 428
Score = 105 bits (224), Expect = 1e-021
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3 / -3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNH AHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 375 TSLSQYSEMAKSKNHAAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-12-P09 3',
mRNA sequence
Length = 345
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / -2
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 320 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 177
>gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-39-P20 3',
mRNA sequence
Length = 402
Score = 105 bits (224), Expect = 1e-021
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = +3 / -1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS 251
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+
Sbjct: 375 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYA 214
>gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-76-J11 5',
mRNA sequence
Length = 383
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +3
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 42 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 185
>gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complete sequence
Length = 421
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +1
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 73 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 216
>emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH35ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 360
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +1
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 31 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 174
>emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL94ZE11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 322
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +3
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 3 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 146
>ref|NM_111548.2| Arabidopsis thaliana structural constituent of ribosome AT3G06680
mRNA, complete cds
Length = 254
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +3
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 66 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 209
>ref|NM_001035573.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.2 mRNA, complete cds
Length = 405
Score = 105 bits (224), Expect = 1e-021
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +3 / +2
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 53 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 196
>gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-19-P18 3',
mRNA sequence
Length = 435
Score = 105 bits (223), Expect = 1e-021
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3 / -1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHN S KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 375 TSLSQ*SEMAKSKNHTAHNHSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 211
>gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-O20 3',
mRNA sequence
Length = 441
Score = 104 bits (222), Expect = 2e-021
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3 / -1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KAHKNGIKKP+RH T T+GMDPKFLRN RY+R
Sbjct: 375 TSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHLHTPTRGMDPKFLRNQRYAR 211
>gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-22-A01 5',
mRNA sequence
Length = 350
Score = 104 bits (221), Expect = 3e-021
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3 / +3
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKSKNHTAHNQS KA KNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 6 TSLSQYSEMAKSKNHTAHNQSAKAQKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 170
>ref|NM_001035574.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.3 mRNA, complete cds
Length = 400
Score = 104 bits (221), Expect = 3e-021
Identities = 40/48 (83%), Positives = 44/48 (91%)
Frame = +3 / +3
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 48 QMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 191
>gb|BP798665.1|BP798665 BP798665 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-08-A18 5',
mRNA sequence
Length = 397
Score = 103 bits (219), Expect = 5e-021
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +3 / +2
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS 251
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+
Sbjct: 65 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYA 205
>gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-H18 5',
mRNA sequence
Length = 403
Score = 103 bits (219), Expect = 5e-021
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +3 / +3
Query: 111 EMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T +GMDPKFLRN RY+R
Sbjct: 54 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPNRGMDPKFLRNQRYAR 197
>gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-74-F01 3',
mRNA sequence
Length = 431
Score = 102 bits (218), Expect = 7e-021
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +3 / -1
Query: 90 SSLRDPEEMAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSR 254
+SL EMAKS NH AHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+R
Sbjct: 371 TSLSQYSEMAKSNNHPAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAR 207
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 980,674,761
Number of Sequences: 1013581
Number of extensions: 12306375
Number of successful extensions: 287112
Number of sequences better than 1.0e-020: 41
length of database: 302,980,290
effective HSP length: 54
effective length of database: 248,246,916
effective search space used: 28796642256
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)