TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.1
(634 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana... 121 3e-026
gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-... 119 7e-026
gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana ... 119 7e-026
gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana ... 119 7e-026
gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana ... 119 7e-026
gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana... 119 7e-026
gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana... 119 7e-026
gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana... 119 7e-026
gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana ... 119 7e-026
gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana ... 119 7e-026
gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana... 119 7e-026
gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana... 119 7e-026
gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana... 119 7e-026
ref|NM_111550.2| Arabidopsis thaliana structural constituen... 119 7e-026
gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana... 119 9e-026
gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana... 117 2e-025
gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana... 117 2e-025
gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana... 117 3e-025
gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana... 116 6e-025
gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana... 116 6e-025
gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana... 116 9e-025
gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana... 116 9e-025
gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana... 116 9e-025
gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana... 116 9e-025
gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana... 115 1e-024
gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana... 115 1e-024
gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana... 115 1e-024
gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana... 115 1e-024
emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cD... 115 1e-024
emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cD... 115 1e-024
ref|NM_111548.2| Arabidopsis thaliana structural constituen... 115 1e-024
gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complet... 114 3e-024
ref|NM_001035573.1| Arabidopsis thaliana structural constit... 114 3e-024
ref|NM_001035574.1| Arabidopsis thaliana structural constit... 112 8e-024
gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana... 112 1e-023
gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana... 112 1e-023
gb|BP798665.1|BP798665 BP798665 RAFL14 Arabidopsis thaliana... 111 2e-023
gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana... 111 2e-023
gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana... 111 2e-023
gb|AV544641.1|AV544641 AV544641 Arabidopsis thaliana roots ... 110 4e-023
emb|BX822483.1|CNS0A7SG Arabidopsis thaliana Full-length cD... 110 5e-023
gb|BT003047.1| Arabidopsis thaliana At3g06680 gene, complet... 109 7e-023
gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana... 108 2e-022
gb|BP607772.1|BP607772 BP607772 RAFL16 Arabidopsis thaliana... 85 2e-022
gb|BP651308.1|BP651308 BP651308 RAFL19 Arabidopsis thaliana... 68 9e-022
gb|BP585210.1|BP585210 BP585210 RAFL15 Arabidopsis thaliana... 105 9e-022
gb|BP623821.1|BP623821 BP623821 RAFL17 Arabidopsis thaliana... 105 1e-021
gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana... 105 2e-021
gb|BP669325.1|BP669325 BP669325 RAFL21 Arabidopsis thaliana... 104 3e-021
gb|BP589709.1|BP589709 BP589709 RAFL15 Arabidopsis thaliana... 83 4e-021
gb|BP662193.1|BP662193 BP662193 RAFL21 Arabidopsis thaliana... 86 6e-021
gb|BP862005.1|BP862005 BP862005 RAFL21 Arabidopsis thaliana... 89 6e-021
>gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-35-C04 3',
mRNA sequence
Length = 434
Score = 121 bits (258), Expect = 3e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
+R SL H EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY RK
Sbjct: 387 TRSTSLSHYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYPRKH 208
Query: 276 NKKSG 290
N K+G
Sbjct: 207 NVKAG 193
>gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550514, mRNA sequence
Length = 378
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 358 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 179
Query: 276 NKKSG 290
N K+G
Sbjct: 178 NVKAG 164
>gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-77-H24 3',
mRNA sequence
Length = 415
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 380 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 201
Query: 276 NKKSG 290
N K+G
Sbjct: 200 NVKAG 186
>gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-J04 3',
mRNA sequence
Length = 408
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 385 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 206
Query: 276 NKKSG 290
N K+G
Sbjct: 205 NVKAG 191
>gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-87-H13 3',
mRNA sequence
Length = 411
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 380 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 201
Query: 276 NKKSG 290
N K+G
Sbjct: 200 NVKAG 186
>gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-C11 3',
mRNA sequence
Length = 430
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 384 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 205
Query: 276 NKKSG 290
N K+G
Sbjct: 204 NVKAG 190
>gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-H03 3',
mRNA sequence
Length = 448
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 380 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 201
Query: 276 NKKSG 290
N K+G
Sbjct: 200 NVKAG 186
>gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-M01 3',
mRNA sequence
Length = 420
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 380 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 201
Query: 276 NKKSG 290
N K+G
Sbjct: 200 NVKAG 186
>gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-56-H14 3',
mRNA sequence
Length = 410
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 381 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 202
Query: 276 NKKSG 290
N K+G
Sbjct: 201 NVKAG 187
>gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-P17 3',
mRNA sequence
Length = 409
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 380 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 201
Query: 276 NKKSG 290
N K+G
Sbjct: 200 NVKAG 186
>gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-N16 5',
mRNA sequence
Length = 389
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / +1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 43 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 222
Query: 276 NKKSG 290
N K+G
Sbjct: 223 NVKAG 237
>gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-N21 5',
mRNA sequence
Length = 394
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / +1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 40 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 219
Query: 276 NKKSG 290
N K+G
Sbjct: 220 NVKAG 234
>gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-J12 5',
mRNA sequence
Length = 378
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / +2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 41 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 220
Query: 276 NKKSG 290
N K+G
Sbjct: 221 NVKAG 235
>ref|NM_111550.2| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.1 mRNA, complete cds
Length = 427
Score = 119 bits (255), Expect = 7e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / +2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 44 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 223
Query: 276 NKKSG 290
N K+G
Sbjct: 224 NVKAG 238
>gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-H11 3',
mRNA sequence
Length = 403
Score = 119 bits (254), Expect = 9e-026
Identities = 49/65 (75%), Positives = 53/65 (81%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 380 SRSTSLPQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 201
Query: 276 NKKSG 290
N K+G
Sbjct: 200 NVKAG 186
>gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-F17 5',
mRNA sequence
Length = 403
Score = 117 bits (251), Expect = 2e-025
Identities = 48/64 (75%), Positives = 52/64 (81%)
Frame = +3 / +2
Query: 99 REPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGN 278
R SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N
Sbjct: 44 RSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN 223
Query: 279 KKSG 290
K+G
Sbjct: 224 VKAG 235
>gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-39-I18 5',
mRNA sequence
Length = 394
Score = 117 bits (251), Expect = 2e-025
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +3 / +1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHT HNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 43 SRSTSLSQYSEMAKSKNHTVHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 222
Query: 276 NKKSG 290
N K+G
Sbjct: 223 NVKAG 237
>gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-40-J12 3',
mRNA sequence
Length = 428
Score = 117 bits (250), Expect = 3e-025
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNH AHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 384 SRSTSLSQYSEMAKSKNHAAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 205
Query: 276 NKKSG 290
N K+G
Sbjct: 204 NLKAG 190
>gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-O20 3',
mRNA sequence
Length = 441
Score = 116 bits (248), Expect = 6e-025
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +3 / -1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RH T T+GMDPKFLRN RY+RK
Sbjct: 384 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHLHTPTRGMDPKFLRNQRYARKH 205
Query: 276 NKKSG 290
N K+G
Sbjct: 204 NVKAG 190
>gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-P17 3',
mRNA sequence
Length = 394
Score = 116 bits (248), Expect = 6e-025
Identities = 48/64 (75%), Positives = 52/64 (81%)
Frame = +3 / -2
Query: 99 REPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGN 278
R SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N
Sbjct: 381 RFTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN 202
Query: 279 KKSG 290
K+G
Sbjct: 201 VKAG 190
>gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-B03 3',
mRNA sequence
Length = 394
Score = 116 bits (247), Expect = 9e-025
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +3 / -1
Query: 108 SLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKS 287
SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+
Sbjct: 370 SLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKA 191
Query: 288 G 290
G
Sbjct: 190 G 188
>gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-46-C14 3',
mRNA sequence
Length = 425
Score = 116 bits (247), Expect = 9e-025
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +3 / -2
Query: 108 SLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKS 287
SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+
Sbjct: 370 SLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKA 191
Query: 288 G 290
G
Sbjct: 190 G 188
>gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-39-C01 3',
mRNA sequence
Length = 424
Score = 116 bits (247), Expect = 9e-025
Identities = 48/64 (75%), Positives = 51/64 (79%)
Frame = +3 / -2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP RHR T T+GMDPKFLRN RY+RK
Sbjct: 384 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPSRHRHTPTRGMDPKFLRNQRYARKH 205
Query: 276 NKKS 287
N K+
Sbjct: 204 NVKA 193
>gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-13-D20 5',
mRNA sequence
Length = 388
Score = 116 bits (247), Expect = 9e-025
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +3 / +2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
+R SL EMAKSKNHT HNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 44 ARSTSLSQYSEMAKSKNHTGHNQSGKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 223
Query: 276 NKKSG 290
N K+G
Sbjct: 224 NVKAG 238
>gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-38-O20 3',
mRNA sequence
Length = 368
Score = 115 bits (246), Expect = 1e-024
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / -2
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N KSG
Sbjct: 319 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSG 155
>gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-12-P09 3',
mRNA sequence
Length = 345
Score = 115 bits (246), Expect = 1e-024
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / -2
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N KSG
Sbjct: 320 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSG 156
>gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-39-P20 3',
mRNA sequence
Length = 402
Score = 115 bits (246), Expect = 1e-024
Identities = 47/65 (72%), Positives = 52/65 (80%)
Frame = +3 / -1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
+R SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+ K
Sbjct: 384 TRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAMKH 205
Query: 276 NKKSG 290
N K+G
Sbjct: 204 NVKAG 190
>gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-76-J11 5',
mRNA sequence
Length = 383
Score = 115 bits (246), Expect = 1e-024
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N KSG
Sbjct: 42 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSG 206
>emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH35ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 360
Score = 115 bits (246), Expect = 1e-024
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / +1
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N KSG
Sbjct: 31 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSG 195
>emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL94ZE11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 322
Score = 115 bits (246), Expect = 1e-024
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N KSG
Sbjct: 3 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSG 167
>ref|NM_111548.2| Arabidopsis thaliana structural constituent of ribosome AT3G06680
mRNA, complete cds
Length = 254
Score = 115 bits (246), Expect = 1e-024
Identities = 46/55 (83%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N KSG
Sbjct: 66 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSG 230
>gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complete sequence
Length = 421
Score = 114 bits (243), Expect = 3e-024
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +3 / +1
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 73 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAG 237
>ref|NM_001035573.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.2 mRNA, complete cds
Length = 405
Score = 114 bits (243), Expect = 3e-024
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +3 / +2
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 53 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAG 217
>ref|NM_001035574.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.3 mRNA, complete cds
Length = 400
Score = 112 bits (240), Expect = 8e-024
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
+MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 48 QMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAG 212
>gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-19-P18 3',
mRNA sequence
Length = 435
Score = 112 bits (239), Expect = 1e-023
Identities = 46/61 (75%), Positives = 49/61 (80%)
Frame = +3 / -1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHN S KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 384 SRSTSLSQ*SEMAKSKNHTAHNHSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKH 205
Query: 276 N 278
N
Sbjct: 204 N 202
>gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-22-A01 5',
mRNA sequence
Length = 350
Score = 112 bits (239), Expect = 1e-023
Identities = 46/61 (75%), Positives = 50/61 (81%)
Frame = +3 / +3
Query: 108 SLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKS 287
SL EMAKSKNHTAHNQS KA KNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+
Sbjct: 9 SLSQYSEMAKSKNHTAHNQSAKAQKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKA 188
Query: 288 G 290
G
Sbjct: 189 G 191
>gb|BP798665.1|BP798665 BP798665 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-08-A18 5',
mRNA sequence
Length = 397
Score = 111 bits (238), Expect = 2e-023
Identities = 45/55 (81%), Positives = 48/55 (87%)
Frame = +3 / +2
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+ K N KSG
Sbjct: 65 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAVKHNVKSG 229
>gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-H18 5',
mRNA sequence
Length = 403
Score = 111 bits (238), Expect = 2e-023
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3 / +3
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKSKNHTAHNQS KAHKNGIKKP+RHR T +GMDPKFLRN RY+RK N K+G
Sbjct: 54 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPNRGMDPKFLRNQRYARKHNVKAG 218
>gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-L02 3',
mRNA sequence
Length = 385
Score = 111 bits (237), Expect = 2e-023
Identities = 45/57 (78%), Positives = 48/57 (84%)
Frame = +3 / -3
Query: 108 SLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGN 278
SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N
Sbjct: 371 SLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN 201
>gb|AV544641.1|AV544641 AV544641 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ52f09F 3', mRNA sequence
Length = 299
Score = 110 bits (235), Expect = 4e-023
Identities = 47/65 (72%), Positives = 51/65 (78%)
Frame = +3 / -2
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAH QS KAHK GIKKP+RHR T T+GMDPKFLRN RY+RK
Sbjct: 280 SRSTSLSQYSEMAKSKNHTAHIQSAKAHKIGIKKPRRHRHTPTRGMDPKFLRNQRYARKL 101
Query: 276 NKKSG 290
N K+G
Sbjct: 100 NVKAG 86
>emb|BX822483.1|CNS0A7SG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB40ZB09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 397
Score = 110 bits (234), Expect = 5e-023
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3 / +3
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
+MAKSKNHTAHNQS KA+KNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 48 QMAKSKNHTAHNQSAKAYKNGIKKPRRHRHTPTRGMDPKFLRNKRYARKHNVKAG 212
>gb|BT003047.1| Arabidopsis thaliana At3g06680 gene, complete cds
Length = 186
Score = 109 bits (233), Expect = 7e-023
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = +3 / +1
Query: 129 MAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
MAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+ K N KSG
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYAVKHNVKSG 162
>gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-74-F01 3',
mRNA sequence
Length = 431
Score = 108 bits (230), Expect = 2e-022
Identities = 44/60 (73%), Positives = 47/60 (78%)
Frame = +3 / -1
Query: 99 REPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGN 278
R SL EMAKS NH AHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N
Sbjct: 377 RSTSLSQYSEMAKSNNHPAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHN 198
>gb|BP607772.1|BP607772 BP607772 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-C13 3',
mRNA sequence
Length = 420
Score = 85.4 bits (180), Expect(2) = 2e-022
Identities = 35/48 (72%), Positives = 37/48 (77%)
Frame = +3 / -1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDP 239
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+G P
Sbjct: 384 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGNGP 241
Score = 42.3 bits (86), Expect(2) = 2e-022
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +3 / -2
Query: 225 KGMDPKFLRNLRYSRKGNKKSG 290
+GMDPKFLRN RY+RK N K+G
Sbjct: 254 EGMDPKFLRNQRYARKHNVKAG 189
>gb|BP651308.1|BP651308 BP651308 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-88-H09 3',
mRNA sequence
Length = 409
Score = 67.5 bits (141), Expect(2) = 9e-022
Identities = 28/36 (77%), Positives = 29/36 (80%)
Frame = +3 / -1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPK 203
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+
Sbjct: 379 SRSTSLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPR 272
Score = 57.9 bits (120), Expect(2) = 9e-022
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3 / -3
Query: 192 KKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
++ KRHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 284 QEAKRHRHTPTRGMDPKFLRNQRYARKHNVKAG 186
>gb|BP585210.1|BP585210 BP585210 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-01-L10 3',
mRNA sequence
Length = 449
Score = 105 bits (225), Expect = 9e-022
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +3 / -3
Query: 96 SREPSLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKG 275
SR SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN R ++
Sbjct: 381 SRSTSLFQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRVRKEA 202
Query: 276 NKK 284
++
Sbjct: 201 QRQ 193
>gb|BP623821.1|BP623821 BP623821 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-08-E24 3',
mRNA sequence
Length = 360
Score = 105 bits (224), Expect = 1e-021
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +3 / -1
Query: 138 SKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
SKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 360 SKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAG 208
>gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-H11 3',
mRNA sequence
Length = 428
Score = 105 bits (223), Expect = 2e-021
Identities = 42/53 (79%), Positives = 45/53 (84%)
Frame = +3 / -3
Query: 108 SLRHPEEMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYS 266
SL EMAKSKNHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN RY+
Sbjct: 372 SLSQYSEMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYA 214
>gb|BP669325.1|BP669325 BP669325 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-30-I01 3',
mRNA sequence
Length = 420
Score = 104 bits (221), Expect = 3e-021
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +3 / -2
Query: 126 EMAKSKNHTAHNQSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
EMAKS NHTAHNQS KAHKNGIKKP+RHR T T+GMDPKFLRN +RK N K+G
Sbjct: 359 EMAKSNNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQCTARKHNVKAG 195
>gb|BP589709.1|BP589709 BP589709 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-50-L17 3',
mRNA sequence
Length = 434
Score = 82.6 bits (174), Expect(2) = 4e-021
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +3 / -2
Query: 162 QSFKAHKNGIKKPKRHRQTSTKGMDPKFLRNLRYSRKGNKKSG 290
+S KAHKNGIKKP+RHR T T+GMDPKFLRN RY+RK N K+G
Sbjct: 322 RSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAG 194
Score = 40.5 bits (82), Expect(2) = 4e-021
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = +3 / -1
Query: 96 SREPSLRHPEEMAKSKNHTAHNQ 164
SR SL EMAKSKNHTAHNQ
Sbjct: 389 SRSTSLSQYSEMAKSKNHTAHNQ 321
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,006,062,047
Number of Sequences: 1013581
Number of extensions: 10457066
Number of successful extensions: 120054
Number of sequences better than 1.0e-020: 54
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 38321166925
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)