TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV781800.1|AV781800 AV781800 RAFL4 Arabidopsis thaliana ... 241 3e-062
gb|AF378885.1|AF378885 Arabidopsis thaliana AT5g08180/T22D6... 241 3e-062
gb|AY050477.1| Arabidopsis thaliana AT5g08180/T22D6_120 mRN... 241 3e-062
ref|NM_120901.2| Arabidopsis thaliana RNA binding / structu... 241 3e-062
gb|BU634909.1|BU634909 012F05 Infected Arabidopsis Leaf Ara... 235 6e-061
gb|AV821375.1|AV821375 AV821375 RAFL4 Arabidopsis thaliana ... 206 6e-057
emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome ... 84 2e-041
gb|BP624009.1|BP624009 BP624009 RAFL17 Arabidopsis thaliana... 152 2e-041
gb|AV554586.1|AV554586 AV554586 Arabidopsis thaliana roots ... 165 2e-039
emb|BX841615.1|CNS09YLP Arabidopsis thaliana Full-length cD... 146 8e-034
gb|BP625528.1|BP625528 BP625528 RAFL17 Arabidopsis thaliana... 142 2e-032
gb|BP624992.1|BP624992 BP624992 RAFL17 Arabidopsis thaliana... 136 1e-030
gb|AV803664.1|AV803664 AV803664 RAFL9 Arabidopsis thaliana ... 120 6e-026
gb|AV805237.1|AV805237 AV805237 RAFL9 Arabidopsis thaliana ... 116 7e-025
>gb|AV781800.1|AV781800 AV781800 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-E11 3',
mRNA sequence
Length = 622
Score = 241 bits (520), Expect = 3e-062
Identities = 101/143 (70%), Positives = 119/143 (83%)
Frame = -3 / -2
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
+KK ++ L IAKPLAGKKL KRT KL+++A+ KCLKRGVKEVVKSIRRG KGLCVIAG
Sbjct: 588 KKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAG 409
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E
Sbjct: 408 NISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEEL 229
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
KLK+DY+QV ++ E +++ *
Sbjct: 228 AKLKTDYEQVSDDIKELATSVI* 160
Score = 149 bits (321), Expect = 8e-035
Identities = 70/109 (64%), Positives = 76/109 (69%)
Frame = +2 / +2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GL TKTQ VG V PA ARSSF+GTYT*GT ASSH IG VITSIGE+FPAITHNP +P
Sbjct: 260 GLSITKTQHVGRFVAPACARSSFEGTYT*GTPASSHKIGR*VITSIGEMFPAITHNPFWP 439
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFF 805
R MLLTTSLTP +HF A SL+V SF PARG A+ FF
Sbjct: 440 RLMLLTTSLTPLFKHFFPAAF*MSLKVLFWSFLPARGLAIGARVIAYFF 586
>gb|AF378885.1|AF378885 Arabidopsis thaliana AT5g08180/T22D6_120 mRNA, complete cds
Length = 703
Score = 241 bits (520), Expect = 3e-062
Identities = 101/143 (70%), Positives = 119/143 (83%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
+KK ++ L IAKPLAGKKL KRT KL+++A+ KCLKRGVKEVVKSIRRG KGLCVIAG
Sbjct: 117 KKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAG 296
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E
Sbjct: 297 NISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEEL 476
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
KLK+DY+QV ++ E +++ *
Sbjct: 477 AKLKTDYEQVSDDIKELATSVI* 545
Score = 149 bits (321), Expect = 8e-035
Identities = 70/109 (64%), Positives = 76/109 (69%)
Frame = +2 / -1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GL TKTQ VG V PA ARSSF+GTYT*GT ASSH IG VITSIGE+FPAITHNP +P
Sbjct: 445 GLSITKTQHVGRFVAPACARSSFEGTYT*GTPASSHKIGR*VITSIGEMFPAITHNPFWP 266
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFF 805
R MLLTTSLTP +HF A SL+V SF PARG A+ FF
Sbjct: 265 RLMLLTTSLTPLFKHFFPAAF*MSLKVLFWSFLPARGLAIGARVIAYFF 119
>gb|AY050477.1| Arabidopsis thaliana AT5g08180/T22D6_120 mRNA, complete cds
Length = 471
Score = 241 bits (520), Expect = 3e-062
Identities = 101/143 (70%), Positives = 119/143 (83%)
Frame = -3 / +1
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
+KK ++ L IAKPLAGKKL KRT KL+++A+ KCLKRGVKEVVKSIRRG KGLCVIAG
Sbjct: 43 KKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAG 222
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E
Sbjct: 223 NISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEEL 402
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
KLK+DY+QV ++ E +++ *
Sbjct: 403 AKLKTDYEQVSDDIKELATSVI* 471
Score = 149 bits (321), Expect = 8e-035
Identities = 70/109 (64%), Positives = 76/109 (69%)
Frame = +2 / -2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GL TKTQ VG V PA ARSSF+GTYT*GT ASSH IG VITSIGE+FPAITHNP +P
Sbjct: 371 GLSITKTQHVGRFVAPACARSSFEGTYT*GTPASSHKIGR*VITSIGEMFPAITHNPFWP 192
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFF 805
R MLLTTSLTP +HF A SL+V SF PARG A+ FF
Sbjct: 191 RLMLLTTSLTPLFKHFFPAAF*MSLKVLFWSFLPARGLAIGARVIAYFF 45
>ref|NM_120901.2| Arabidopsis thaliana RNA binding / structural constituent of
ribosome AT5G08180 mRNA, complete cds
Length = 731
Score = 241 bits (520), Expect = 3e-062
Identities = 101/143 (70%), Positives = 119/143 (83%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
+KK ++ L IAKPLAGKKL KRT KL+++A+ KCLKRGVKEVVKSIRRG KGLCVIAG
Sbjct: 117 KKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAG 296
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E
Sbjct: 297 NISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEEL 476
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
KLK+DY+QV ++ E +++ *
Sbjct: 477 AKLKTDYEQVSDDIKELATSVI* 545
Score = 149 bits (321), Expect = 8e-035
Identities = 70/109 (64%), Positives = 76/109 (69%)
Frame = +2 / -2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GL TKTQ VG V PA ARSSF+GTYT*GT ASSH IG VITSIGE+FPAITHNP +P
Sbjct: 445 GLSITKTQHVGRFVAPACARSSFEGTYT*GTPASSHKIGR*VITSIGEMFPAITHNPFWP 266
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFF 805
R MLLTTSLTP +HF A SL+V SF PARG A+ FF
Sbjct: 265 RLMLLTTSLTPLFKHFFPAAF*MSLKVLFWSFLPARGLAIGARVIAYFF 119
>gb|BU634909.1|BU634909 012F05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 677
Score = 235 bits (507), Expect(2) = 6e-061
Identities = 98/139 (70%), Positives = 115/139 (82%)
Frame = -3 / +3
Query: 795 SVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISP 616
++ L IAKPLAGKKL KRT KL+++A+ KCLKRGVKEVVKSIRRG KGLCVIAGNISP
Sbjct: 168 AITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISP 347
Query: 615 IDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLK 436
IDV TH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E KLK
Sbjct: 348 IDVFTHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLK 527
Query: 435 SDYDQVVTEVAEATSAMF* 379
+DY+QV ++ E +++ *
Sbjct: 528 TDYEQVSDDIKELATSVI* 584
Score = 144 bits (309), Expect = 4e-033
Identities = 67/100 (67%), Positives = 73/100 (73%)
Frame = +2 / -2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GL TKTQ VG V PA ARSSF+GTYT*GT ASSH IG V TSIGE+FPAITHNP +P
Sbjct: 484 GLSITKTQHVGRFVAPACARSSFEGTYT*GTPASSHKIGR*VKTSIGEMFPAITHNPFWP 305
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAM 778
R MLLTTSLTP +HF A SL+V SF PARG A+
Sbjct: 304 RLMLLTTSLTPLFKHFFPAAF*MSLKVLFWSFLPARGLAI 185
Score = 22.1 bits (42), Expect(2) = 6e-061
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3 / +2
Query: 837 AAAMGSDTETEK 802
A MGSDTE EK
Sbjct: 104 AKNMGSDTEAEK 139
>gb|AV821375.1|AV821375 AV821375 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-E11 5',
mRNA sequence
Length = 641
Score = 206 bits (445), Expect(2) = 6e-057
Identities = 85/122 (69%), Positives = 101/122 (82%)
Frame = -3 / +1
Query: 744 KRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVP 565
+ KL+++A+ KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEEA VP
Sbjct: 184 RELXKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVP 363
Query: 564 YVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAM 385
YVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E KLK+DY+QV ++ E +++
Sbjct: 364 YVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 543
Query: 384 F* 379
*
Sbjct: 544 I* 549
Score = 136 bits (291), Expect = 1e-030
Identities = 64/99 (64%), Positives = 69/99 (69%)
Frame = +2 / -1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GL TKTQ VG V PA ARSSF+GTYT*GT ASSH IG VITSIGE+FPAITHNP +P
Sbjct: 449 GLSITKTQHVGRFVAPACARSSFEGTYT*GTPASSHKIGR*VITSIGEMFPAITHNPFWP 270
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFA 775
R MLLTTSLTP +HF A SL L FF F+
Sbjct: 269 RLMLLTTSLTPLFKHFFPAAF*MSLXSSLLEFFAGERFS 153
Score = 37.3 bits (75), Expect(2) = 6e-057
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRT 736
+KK ++ L IAKPLAGKKL KRT
Sbjct: 120 KKKYAITLAPIAKPLAGKKLQKRT 191
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
Length = 89988
Score = 83.5 bits (176), Expect(4) = 2e-041
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -3 / -3
Query: 645 LCVIAGNISPIDVITHVPILCEEANVPYVYVPSKE 541
LCVIAGNISPIDVITH+PILCEEA VPYVYVPSKE
Sbjct: 58870 LCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKE 58766
Score = 75.3 bits (158), Expect(4) = 2e-041
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = -3 / -2
Query: 543 EDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAMF* 379
+DLA AG TKRPTCCVLV+ KP KG+L+ E KLK+DY+QV ++ E +++ *
Sbjct: 58676 QDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSVI* 58512
Score = 49.6 bits (102), Expect(4) = 2e-041
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -3 / -3
Query: 717 ASEAKCLKRGVKEVVKSIRRGNKGL 643
A+ KCLKRGVKEVVKSIRRG KGL
Sbjct: 59803 AAGKKCLKRGVKEVVKSIRRGQKGL 59729
Score = 44.6 bits (91), Expect(4) = 2e-041
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -3 / -3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRAS 712
+KK ++ L IAKPLAGKKL KRT KL+++ +
Sbjct: 60001 KKKYAITLAPIAKPLAGKKLQKRTFKLIQKGT 59906
>gb|BP624009.1|BP624009 BP624009 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-38-K02 3',
mRNA sequence
Length = 414
Score = 152 bits (327), Expect(2) = 2e-041
Identities = 63/95 (66%), Positives = 75/95 (78%)
Frame = -3 / -2
Query: 663 RRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLT 484
+ KGLCVIAGNISPIDVITH+PILC EA VPYVYVPSKEDLA AG TKRPTCCVLV+
Sbjct: 371 KTSQKGLCVIAGNISPIDVITHLPILC*EAGVPYVYVPSKEDLAQAGATKRPTCCVLVML 192
Query: 483 KPNKGELSGEVKDKLKSDYDQVVTEVAEATSAMF* 379
P KG+L+ E KLK+DY+QV ++ E +++ *
Sbjct: 191 *PAKGDLTAEELAKLKTDYEQVSDDIKELATSLI* 87
Score = 94.1 bits (199), Expect(2) = 3e-021
Identities = 42/55 (76%), Positives = 45/55 (81%)
Frame = +2 / +1
Query: 491 TKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLF 655
TKTQ VG LV PA ARSSF+GTYT*GT AS H IG VITSIGE+FPAITHNP +
Sbjct: 199 TKTQHVGRLVAPAWARSSFEGTYT*GTPAS*HKIGR*VITSIGEMFPAITHNPFW 363
Score = 39.1 bits (79), Expect(2) = 2e-041
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3 / -3
Query: 705 KCLKRGVKEVVKSIRRGNK 649
KCL RGVKEVVKSIRR K
Sbjct: 412 KCLNRGVKEVVKSIRRARK 356
Score = 30.4 bits (60), Expect(2) = 3e-021
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / +3
Query: 659 RRMLLTTSLTPRLRHF 706
R MLLTTSLTP +HF
Sbjct: 366 RLMLLTTSLTPLFKHF 413
>gb|AV554586.1|AV554586 AV554586 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ95g09R 5', mRNA sequence
Length = 320
Score = 165 bits (354), Expect = 2e-039
Identities = 70/95 (73%), Positives = 78/95 (82%)
Frame = -3 / +1
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
+KK ++ L IAKPLAGKKL KRT KL+++A+ CLKRGV V SIRRG KGLCVIAG
Sbjct: 25 KKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKTCLKRGVTAVATSIRRGQKGLCVIAG 204
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAG 523
NISPIDVITH+PILCEEA VPYVYVPSKEDLA G
Sbjct: 205 NISPIDVITHLPILCEEAGVPYVYVPSKEDLAQQG 309
Score = 116 bits (247), Expect = 1e-024
Identities = 53/94 (56%), Positives = 62/94 (65%)
Frame = +2 / -1
Query: 524 PAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFPRRMLLTTSLTPRLRH 703
P ARSSF+GTYT*GT ASSH IG VITSIGE+ PAITH P +PR ML+ T++TP +H
Sbjct: 308 PCCARSSFEGTYT*GTPASSHKIGR*VITSIGEMLPAITHKPFWPRLMLVATAVTPLFKH 129
Query: 704 FASEARRTSLRVRLQSFFPARGFAMDISATEAFF 805
A SL+V SF PARG A+ FF
Sbjct: 128 VFPAAF*MSLKVLFWSFLPARGLAIGARVIAYFF 27
>emb|BX841615.1|CNS09YLP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB12ZG04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 658
Score = 146 bits (314), Expect = 8e-034
Identities = 64/98 (65%), Positives = 76/98 (77%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
+KK ++ L IAKPLAGK++ KRT K +++ KCLKRGVKEVVKSIR G +GLCVIAG
Sbjct: 120 KKKYAITLDPIAKPLAGKRVQKRTFKFIQKGVGKKCLKRGVKEVVKSIRGGQRGLCVIAG 299
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTK 514
I PIDVITH+PILCE A V +VYV SKEDLA G T+
Sbjct: 300 KI*PIDVITHLPILCEGAGVLFVYVLSKEDLANGGGTE 413
Score = 110 bits (234), Expect = 8e-023
Identities = 53/96 (55%), Positives = 61/96 (63%)
Frame = +2 / -1
Query: 518 VVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFPRRMLLTTSLTPRL 697
V P ARSSF+ TYT T A SH IG VITSIG+IFPAITHNPL+P MLLTTSLTP
Sbjct: 409 VPPPFARSSFERTYTKRTPAPSHKIGR*VITSIGQIFPAITHNPLWPPLMLLTTSLTPLF 230
Query: 698 RHFASEARRTSLRVRLQSFFPARGFAMDISATEAFF 805
+HF +L+V + PARG A+ FF
Sbjct: 229 KHFFPTPF*INLKVLFWTLLPARGLAIGSRVIAYFF 122
>gb|BP625528.1|BP625528 BP625528 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-44-C08 3',
mRNA sequence
Length = 436
Score = 142 bits (304), Expect = 2e-032
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = -3 / -2
Query: 630 GNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEV 451
GNISPIDVITH+PILCEEA VPY+YVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E
Sbjct: 435 GNISPIDVITHLPILCEEAGVPYLYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEE 256
Query: 450 KDKLKSDYDQVVTEVAEATSAMF* 379
KLK+DY+QV ++ E +++ *
Sbjct: 255 LAKLKTDYEQVSDDIKELATSVI* 184
>gb|BP624992.1|BP624992 BP624992 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-42-D24 3',
mRNA sequence
Length = 425
Score = 136 bits (291), Expect = 1e-030
Identities = 55/81 (67%), Positives = 66/81 (81%)
Frame = -3 / -1
Query: 621 SPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDK 442
SPIDVITH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E K
Sbjct: 425 SPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAK 246
Query: 441 LKSDYDQVVTEVAEATSAMF* 379
LK+DY+QV ++ E +++ *
Sbjct: 245 LKTDYEQVSDDIKELATSVI* 183
>gb|AV803664.1|AV803664 AV803664 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-36-F16 3',
mRNA sequence
Length = 409
Score = 120 bits (257), Expect = 6e-026
Identities = 48/74 (64%), Positives = 59/74 (79%)
Frame = -3 / -2
Query: 600 HVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQ 421
H+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E KLK+DY+Q
Sbjct: 408 HLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQ 229
Query: 420 VVTEVAEATSAMF* 379
V ++ E +++ *
Sbjct: 228 VSDDIKELATSVI* 187
>gb|AV805237.1|AV805237 AV805237 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-42-D17 3',
mRNA sequence
Length = 408
Score = 116 bits (249), Expect = 7e-025
Identities = 47/73 (64%), Positives = 58/73 (79%)
Frame = -3 / -3
Query: 597 VPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQV 418
+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV+ KP KG+L+ E KLK+DY+QV
Sbjct: 406 LPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQV 227
Query: 417 VTEVAEATSAMF* 379
++ E +++ *
Sbjct: 226 SDDIKELATSVI* 188
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,797,041,898
Number of Sequences: 1013581
Number of extensions: 26008443
Number of successful extensions: 184326
Number of sequences better than 1.0e-020: 15
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 58107861944
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)