TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF372889.1|AF372889 Arabidopsis thaliana AT5g03740/F17C1... 71 2e-037
emb|BX832022.1|CNS09YN4 Arabidopsis thaliana Full-length cD... 71 3e-037
ref|NM_120455.2| Arabidopsis thaliana HD2C (HISTONE DEACETY... 70 4e-037
emb|BX829630.1|CNS0A1XQ Arabidopsis thaliana Full-length cD... 71 4e-037
gb|AF255712.1|AF255712 Arabidopsis thaliana putative histon... 71 9e-037
gb|AY142039.1| Arabidopsis thaliana At5g03740/F17C15_160 mR... 71 9e-037
gb|AF510168.1| Arabidopsis thaliana HDT3 mRNA, complete cds 71 9e-037
emb|BX831767.1|CNS09ZOA Arabidopsis thaliana Full-length cD... 71 2e-036
gb|CF651913.1|CF651913 22-L020578-066-004-K06-SP6P MPIZ-ADI... 71 1e-035
gb|AY096729.1| Arabidopsis thaliana putative histone deacet... 71 1e-035
gb|AF195545.1| Arabidopsis thaliana putative histone deacet... 71 1e-035
emb|AX139018.1| Sequence 5 from Patent EP1094112 71 1e-035
ref|NM_114344.2| Arabidopsis thaliana HD2A (HISTONE DEACETY... 71 1e-035
gb|AY065396.1| Arabidopsis thaliana putative histone deacet... 71 1e-035
emb|BX831325.1|CNS0A1W5 Arabidopsis thaliana Full-length cD... 72 3e-035
emb|BX829885.1|CNS0A02H Arabidopsis thaliana Full-length cD... 71 4e-034
emb|BX833365.1|CNS0A1UU Arabidopsis thaliana Full-length cD... 65 2e-025
gb|AY122890.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA,... 78 2e-025
emb|AX507800.1| Sequence 2495 from Patent WO0216655 78 2e-025
gb|AF044914.1|AF044914 Arabidopsis thaliana putative histon... 78 2e-025
gb|AY059893.1| Arabidopsis thaliana histone deacetylase-lik... 78 3e-025
gb|AY079014.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA,... 78 3e-025
ref|NM_180725.1| Arabidopsis thaliana HD2B (HISTONE DEACETY... 78 3e-025
ref|NM_122171.2| Arabidopsis thaliana HD2B (HISTONE DEACETY... 78 3e-025
emb|AX139020.1| Sequence 7 from Patent EP1094112 78 3e-025
gb|AF195546.1| Arabidopsis thaliana putative histone deacet... 78 4e-025
gb|BP796184.1|BP796184 BP796184 RAFL4 Arabidopsis thaliana ... 71 1e-024
gb|AV824471.1|AV824471 AV824471 RAFL6 Arabidopsis thaliana ... 71 2e-023
dbj|AB005235.1| Arabidopsis thaliana genomic DNA, chromosom... 71 3e-023
gb|CK120402.1|CK120402 218m24.p1 AtM1 Arabidopsis thaliana ... 78 5e-023
gb|CK120238.1|CK120238 208b17.p1 AtM1 Arabidopsis thaliana ... 78 6e-023
gb|CK120542.1|CK120542 207e07.p1 AtM1 Arabidopsis thaliana ... 78 6e-023
emb|AL162506.1|ATF17C15 Arabidopsis thaliana DNA chromosome... 71 7e-023
gb|BP823613.1|BP823613 BP823613 RAFL19 Arabidopsis thaliana... 72 7e-023
gb|CK118104.1|CK118104 218b13.p1 AtM1 Arabidopsis thaliana ... 78 2e-022
gb|BP865197.1|BP865197 BP865197 RAFL21 Arabidopsis thaliana... 73 3e-022
gb|AV821267.1|AV821267 AV821267 RAFL3 Arabidopsis thaliana ... 71 5e-022
gb|AV552636.1|AV552636 AV552636 Arabidopsis thaliana roots ... 71 5e-022
gb|AV524528.1|AV524528 AV524528 Arabidopsis thaliana aboveg... 71 5e-022
gb|BE520370.1|BE520370 M12A1STM Arabidopsis developing seed... 70 6e-022
gb|BP820599.1|BP820599 BP820599 RAFL19 Arabidopsis thaliana... 71 9e-022
gb|BP844017.1|BP844017 BP844017 RAFL21 Arabidopsis thaliana... 71 9e-022
gb|BP865405.1|BP865405 BP865405 RAFL21 Arabidopsis thaliana... 71 9e-022
gb|BP826434.1|BP826434 BP826434 RAFL19 Arabidopsis thaliana... 71 9e-022
gb|BP829318.1|BP829318 BP829318 RAFL19 Arabidopsis thaliana... 71 9e-022
gb|BP851161.1|BP851161 BP851161 RAFL21 Arabidopsis thaliana... 71 8e-021
gb|BU634928.1|BU634928 002G09 Infected Arabidopsis Leaf Ara... 78 1e-020
>gb|AF372889.1|AF372889 Arabidopsis thaliana AT5g03740/F17C15_160 mRNA, complete cds
Length = 1236
Score = 70.7 bits (148), Expect(4) = 2e-037
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +2
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 242 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 397
Score = 59.7 bits (124), Expect(4) = 2e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +2
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 884 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 988
Score = 57.0 bits (118), Expect(4) = 2e-037
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +2
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 92 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 223
Score = 35.9 bits (72), Expect(4) = 2e-037
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +2
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 776 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 880
>emb|BX832022.1|CNS09YN4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH47ZA09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1415
Score = 70.7 bits (148), Expect(4) = 3e-037
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 234 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 389
Score = 59.7 bits (124), Expect(4) = 3e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +2
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 989 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 1093
Score = 57.0 bits (118), Expect(4) = 3e-037
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 84 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 215
Score = 35.9 bits (72), Expect(4) = 3e-037
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +2
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 881 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 985
>ref|NM_120455.2| Arabidopsis thaliana HD2C (HISTONE DEACETYLASE 2C); nucleic acid
binding / zinc ion binding AT5G03740 (HD2C) mRNA,
complete cds
Length = 1202
Score = 69.8 bits (146), Expect(4) = 4e-037
Identities = 30/55 (54%), Positives = 37/55 (67%)
Frame = -1 / +2
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPI 896
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYK E I
Sbjct: 227 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKPEDLI 391
Score = 59.7 bits (124), Expect(4) = 4e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +2
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 848 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 952
Score = 57.0 bits (118), Expect(4) = 4e-037
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +2
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 77 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 208
Score = 35.9 bits (72), Expect(4) = 4e-037
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +2
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 740 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 844
>emb|BX829630.1|CNS0A1XQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB26ZA07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1134
Score = 70.7 bits (148), Expect(4) = 4e-037
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +1
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 232 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 387
Score = 59.7 bits (124), Expect(4) = 4e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +1
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 874 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 978
Score = 57.0 bits (118), Expect(4) = 4e-037
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +1
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 82 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 213
Score = 34.5 bits (69), Expect(4) = 4e-037
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1 / +1
Query: 472 QKTGGKKGATHVATPHPAK 416
QKT KK HVATPHP+K
Sbjct: 766 QKTDSKKPHVHVATPHPSK 822
>gb|AF255712.1|AF255712 Arabidopsis thaliana putative histone deacetylase HD2c mRNA, complete
cds
Length = 885
Score = 70.7 bits (148), Expect(4) = 9e-037
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +1
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 130 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 285
Score = 59.7 bits (124), Expect(4) = 9e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +1
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 772 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 876
Score = 53.3 bits (110), Expect(4) = 9e-037
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 111
Score = 35.9 bits (72), Expect(4) = 9e-037
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +1
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 664 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 768
>gb|AY142039.1| Arabidopsis thaliana At5g03740/F17C15_160 mRNA, complete cds
Length = 885
Score = 70.7 bits (148), Expect(4) = 9e-037
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +1
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 130 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 285
Score = 59.7 bits (124), Expect(4) = 9e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +1
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 772 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 876
Score = 53.3 bits (110), Expect(4) = 9e-037
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 111
Score = 35.9 bits (72), Expect(4) = 9e-037
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +1
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 664 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 768
>gb|AF510168.1| Arabidopsis thaliana HDT3 mRNA, complete cds
Length = 885
Score = 70.7 bits (148), Expect(4) = 9e-037
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +1
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 130 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 285
Score = 59.7 bits (124), Expect(4) = 9e-037
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +1
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 772 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 876
Score = 53.3 bits (110), Expect(4) = 9e-037
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 1 MEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 111
Score = 35.9 bits (72), Expect(4) = 9e-037
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +1
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 664 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 768
>emb|BX831767.1|CNS09ZOA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH28ZG10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1282
Score = 70.7 bits (148), Expect(4) = 2e-036
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 228 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 383
Score = 57.0 bits (118), Expect(4) = 2e-036
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = -1 / +2
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+++KAKH A
Sbjct: 983 QQTPKSAGAFGCKSCTRTFTSEMGLQSYTKAKHSA 1087
Score = 57.0 bits (118), Expect(4) = 2e-036
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 78 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 209
Score = 35.9 bits (72), Expect(4) = 2e-036
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +2
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 875 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 979
>gb|CF651913.1|CF651913 22-L020578-066-004-K06-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001K064Q 5-PRIME, mRNA sequence
Length = 845
Score = 71.2 bits (149), Expect(4) = 1e-035
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +1
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 121 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 297
Score = 58.8 bits (122), Expect(4) = 1e-035
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
P K K+ +SPKS V C SC KTFNS AL++H+KAKH A
Sbjct: 601 PQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 747
Score = 55.6 bits (115), Expect(4) = 1e-035
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 16 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 123
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2 / +2
Query: 606 MIPVMMTRKKPQLLKSQRQARREVLKML*KRLFLIRKQR 490
++ V + RKK L+S QARRE++K+ K L R+++
Sbjct: 473 ILMVRILRKKSLHLRSLHQARRELMKLPLKHLCQQRRRK 589
>gb|AY096729.1| Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA,
complete cds
Length = 769
Score = 71.2 bits (149), Expect(4) = 1e-035
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +1
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 103 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 279
Score = 58.8 bits (122), Expect(4) = 1e-035
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
P K K+ +SPKS V C SC KTFNS AL++H+KAKH A
Sbjct: 583 PQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 729
Score = 55.1 bits (114), Expect(4) = 1e-035
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 1 MEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 105
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2 / +2
Query: 606 MIPVMMTRKKPQLLKSQRQARREVLKML*KRLFLIRKQR 490
++ V + RKK L+S QARRE++K+ K L R+++
Sbjct: 455 ILMVRILRKKSLHLRSLHQARRELMKLPLKHLCQQRRRK 571
>gb|AF195545.1| Arabidopsis thaliana putative histone deacetylase (HD2A) mRNA,
complete cds
Length = 914
Score = 71.2 bits (149), Expect(4) = 1e-035
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +1
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 151 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 327
Score = 58.8 bits (122), Expect(4) = 1e-035
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
P K K+ +SPKS V C SC KTFNS AL++H+KAKH A
Sbjct: 631 PQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 777
Score = 55.6 bits (115), Expect(4) = 1e-035
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 46 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 153
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2 / +2
Query: 606 MIPVMMTRKKPQLLKSQRQARREVLKML*KRLFLIRKQR 490
++ V + RKK L+S QARRE++K+ K L R+++
Sbjct: 503 ILMVRILRKKSLHLRSLHQARRELMKLPLKHLCQQRRRK 619
>emb|AX139018.1| Sequence 5 from Patent EP1094112
Length = 939
Score = 71.2 bits (149), Expect(4) = 1e-035
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +1
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 151 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 327
Score = 58.8 bits (122), Expect(4) = 1e-035
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = -1 / +1
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
P K K+ +SPKS V C SC KTFNS AL++H+KAKH A
Sbjct: 631 PQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 777
Score = 55.6 bits (115), Expect(4) = 1e-035
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 46 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 153
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2 / +2
Query: 606 MIPVMMTRKKPQLLKSQRQARREVLKML*KRLFLIRKQR 490
++ V + RKK L+S QARRE++K+ K L R+++
Sbjct: 503 ILMVRILRKKSLHLRSLHQARRELMKLPLKHLCQQRRRK 619
>ref|NM_114344.2| Arabidopsis thaliana HD2A (HISTONE DEACETYLASE 2A); nucleic acid
binding / zinc ion binding AT3G44750 (HD2A) mRNA,
complete cds
Length = 961
Score = 71.2 bits (149), Expect(4) = 1e-035
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 165 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 341
Score = 58.8 bits (122), Expect(4) = 1e-035
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = -1 / +3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
P K K+ +SPKS V C SC KTFNS AL++H+KAKH A
Sbjct: 645 PQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 791
Score = 55.6 bits (115), Expect(4) = 1e-035
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 60 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 167
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 606 MIPVMMTRKKPQLLKSQRQARREVLKML*KRLFLIRKQR 490
++ V + RKK L+S QARRE++K+ K L R+++
Sbjct: 517 ILMVRILRKKSLHLRSLHQARRELMKLPLKHLCQQRRRK 633
>gb|AY065396.1| Arabidopsis thaliana putative histone deacetylase (At3g44750) mRNA,
complete cds
Length = 977
Score = 71.2 bits (149), Expect(4) = 1e-035
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 165 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 341
Score = 58.8 bits (122), Expect(4) = 1e-035
Identities = 24/49 (48%), Positives = 29/49 (59%)
Frame = -1 / +3
Query: 424 PAKGKTPANNDKSTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
P K K+ +SPKS V C SC KTFNS AL++H+KAKH A
Sbjct: 645 PQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALESHNKAKHAA 791
Score = 55.6 bits (115), Expect(4) = 1e-035
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 60 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 167
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 606 MIPVMMTRKKPQLLKSQRQARREVLKML*KRLFLIRKQR 490
++ V + RKK L+S QARRE++K+ K L R+++
Sbjct: 517 ILMVRILRKKSLHLRSLHQARRELMKLPLKHLCQQRRRK 633
>emb|BX831325.1|CNS0A1W5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZF02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1182
Score = 71.6 bits (150), Expect(4) = 3e-035
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V ++F LSHT K SVFFSGYKV+
Sbjct: 228 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERDFALSHTWKNGSVFFSGYKVD 383
Score = 55.1 bits (114), Expect(4) = 3e-035
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EV+ G + +PG ++H+SQ ALGESK +
Sbjct: 78 ITLPRTTMEFWGVEVENGKPLHLDPGLDRLVHISQVALGESKNN 209
Score = 53.3 bits (110), Expect(4) = 3e-035
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = -1 / +3
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++T SEM Q+H+KAKH A
Sbjct: 870 QQTPKSAGAFGCKSCTRTSTSEMGSQSHTKAKHSA 974
Score = 35.9 bits (72), Expect(4) = 3e-035
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +3
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 762 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 866
>emb|BX829885.1|CNS0A02H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB43ZC12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1269
Score = 70.7 bits (148), Expect(4) = 4e-034
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +2
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 221 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 376
Score = 57.0 bits (118), Expect(4) = 4e-034
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +2
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 71 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 202
Score = 48.7 bits (100), Expect(4) = 4e-034
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = -1 / +2
Query: 349 CKSCSKTFNSEMALQAHSKAKHGA 278
CKSC++TF SEM LQ+H+KAKH A
Sbjct: 1010 CKSCTRTFTSEMGLQSHTKAKHSA 1081
Score = 35.9 bits (72), Expect(4) = 4e-034
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1 / +1
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST ++ K
Sbjct: 868 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 972
>emb|BX833365.1|CNS0A1UU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL48ZC09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 948
Score = 65.2 bits (136), Expect(3) = 2e-025
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 1048 VDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 1 VGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 144
Score = 62.5 bits (130), Expect(3) = 2e-025
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = -1 / +1
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKSGG+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 631 QQTPKSGGAFGCKSCTRTFTSEMGLQSHTKAKHSA 735
Score = 35.0 bits (70), Expect(3) = 2e-025
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1 / +1
Query: 472 QKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
QKT KK HVATPHP+K + ST + K
Sbjct: 523 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGDTSK 627
>gb|AY122890.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA, complete cds
Length = 921
Score = 78.0 bits (164), Expect(4) = 2e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 106 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 276
Score = 41.4 bits (84), Expect(4) = 2e-025
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 126
Score = 33.6 bits (67), Expect(4) = 2e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 622 KKRPNESVSKTPVSGKKAKPAAAPA 696
Score = 28.1 bits (55), Expect(4) = 2e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +1
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 688 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 825
>emb|AX507800.1| Sequence 2495 from Patent WO0216655
Length = 921
Score = 78.0 bits (164), Expect(4) = 2e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 106 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 276
Score = 41.4 bits (84), Expect(4) = 2e-025
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 126
Score = 33.6 bits (67), Expect(4) = 2e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 622 KKRPNESVSKTPVSGKKAKPAAAPA 696
Score = 28.1 bits (55), Expect(4) = 2e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +1
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 688 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 825
>gb|AF044914.1|AF044914 Arabidopsis thaliana putative histone deacetylase (HD2) mRNA,
complete cds
Length = 918
Score = 78.0 bits (164), Expect(4) = 2e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 106 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 276
Score = 41.4 bits (84), Expect(4) = 2e-025
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1 / +1
Query: 1183 MEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 1 MEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 126
Score = 33.6 bits (67), Expect(4) = 2e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 622 KKRPNESVSKTPVSGKKAKPAAAPA 696
Score = 27.6 bits (54), Expect(4) = 2e-025
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / +1
Query: 457 KKGATHVATPHPAK 416
KK H ATPHPAK
Sbjct: 718 KKKGGHTATPHPAK 759
>gb|AY059893.1| Arabidopsis thaliana histone deacetylase-like protein (At5g22650;
MDJ22.7) mRNA, complete cds
Length = 1172
Score = 78.0 bits (164), Expect(4) = 3e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 180 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 350
Score = 41.8 bits (85), Expect(4) = 3e-025
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 72 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 200
Score = 33.6 bits (67), Expect(4) = 3e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +3
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 696 KKRPNESVSKTPVSGKKAKPAAAPA 770
Score = 28.1 bits (55), Expect(4) = 3e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +3
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 762 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 899
>gb|AY079014.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA, complete cds
Length = 1193
Score = 78.0 bits (164), Expect(4) = 3e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 178 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 348
Score = 41.8 bits (85), Expect(4) = 3e-025
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 70 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 198
Score = 33.6 bits (67), Expect(4) = 3e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 694 KKRPNESVSKTPVSGKKAKPAAAPA 768
Score = 28.1 bits (55), Expect(4) = 3e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +1
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 760 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 897
>ref|NM_180725.1| Arabidopsis thaliana HD2B (HISTONE DEACETYLASE 2B) AT5G22650 (HD2B)
transcript variant AT5G22650.1 mRNA, complete cds
Length = 1195
Score = 78.0 bits (164), Expect(4) = 3e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 180 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 350
Score = 41.8 bits (85), Expect(4) = 3e-025
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 72 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 200
Score = 33.6 bits (67), Expect(4) = 3e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +3
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 696 KKRPNESVSKTPVSGKKAKPAAAPA 770
Score = 28.1 bits (55), Expect(4) = 3e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +3
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 762 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 899
>ref|NM_122171.2| Arabidopsis thaliana HD2B (HISTONE DEACETYLASE 2B) AT5G22650 (HD2B)
transcript variant AT5G22650.2 mRNA, complete cds
Length = 1200
Score = 78.0 bits (164), Expect(4) = 3e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 162 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 332
Score = 41.8 bits (85), Expect(4) = 3e-025
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 54 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 182
Score = 33.6 bits (67), Expect(4) = 3e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 682 KKRPNESVSKTPVSGKKAKPAAAPA 756
Score = 28.1 bits (55), Expect(4) = 3e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +1
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 748 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 885
>emb|AX139020.1| Sequence 7 from Patent EP1094112
Length = 1218
Score = 78.0 bits (164), Expect(4) = 3e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 166 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 336
Score = 41.8 bits (85), Expect(4) = 3e-025
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 58 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 186
Score = 33.6 bits (67), Expect(4) = 3e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 685 KKRPNESVSKTPVSGKKAKPAAAPA 759
Score = 28.1 bits (55), Expect(4) = 3e-025
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1 / +1
Query: 496 AKVATPPAQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPKSGG 359
A +TP + K G T P GK+P N ++S + +S G
Sbjct: 751 APASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSG 888
>gb|AF195546.1| Arabidopsis thaliana putative histone deacetylase (HD2B) mRNA,
complete cds
Length = 1187
Score = 78.0 bits (164), Expect(4) = 4e-025
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 166 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 336
Score = 41.8 bits (85), Expect(4) = 4e-025
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 58 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 186
Score = 33.6 bits (67), Expect(4) = 4e-025
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 682 KKRPNESVSKTPVSGKKAKPAAAPA 756
Score = 27.6 bits (54), Expect(4) = 4e-025
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1 / +1
Query: 457 KKGATHVATPHPAK 416
KK H ATPHPAK
Sbjct: 778 KKKGGHTATPHPAK 819
>gb|BP796184.1|BP796184 BP796184 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-13-O16 5', mRNA
sequence
Length = 666
Score = 71.2 bits (149), Expect(3) = 1e-024
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +1
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 166 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 342
Score = 55.6 bits (115), Expect(3) = 1e-024
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 61 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 168
Score = 31.8 bits (63), Expect(3) = 1e-024
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1 / +1
Query: 553 AGKKRGAENALKTPLSDKKAKVATPP 476
+ KKR E K P+S KKAKVA P
Sbjct: 571 SSKKRANETPPKAPVSAKKAKVAVTP 648
>gb|AV824471.1|AV824471 AV824471 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-70-K17 5', mRNA
sequence
Length = 672
Score = 71.2 bits (149), Expect(3) = 2e-023
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +1
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 166 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 342
Score = 55.6 bits (115), Expect(3) = 2e-023
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 61 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 168
Score = 28.1 bits (55), Expect(3) = 2e-023
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1 / +1
Query: 553 AGKKRGAENALKTPLSDKKAKVATPPAQKTGGKK 452
+ KKR N P+S KKAKVA P + KK
Sbjct: 571 SSKKRA**NYP*APVSAKKAKVAVTPXKTDXXKK 672
>dbj|AB005235.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MED24
Length = 75475
Score = 70.7 bits (148), Expect(4) = 3e-023
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 2445 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 2600
Score = 59.7 bits (124), Expect(4) = 3e-023
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +2
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 3761 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 3865
Score = 31.8 bits (63), Expect(4) = 3e-023
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1 / +2
Query: 475 AQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
+ K KK HVATPHP+K + ST ++ K
Sbjct: 3650 SDKADSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 3757
Score = 30.4 bits (60), Expect(4) = 3e-023
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1 / +1
Query: 1177 FWGLEVKPGSTVKCEPGHGFILHVSQAAL 1091
F G+EVK G + +PG ++H+SQ L
Sbjct: 2245 FAGVEVKNGKPLHLDPGLDRLVHISQVLL 2331
>gb|CK120402.1|CK120402 218m24.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011M24218
5-PRIME, mRNA sequence
Length = 734
Score = 78.0 bits (164), Expect(3) = 5e-023
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 135 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 305
Score = 41.8 bits (85), Expect(3) = 5e-023
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 27 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 155
Score = 33.6 bits (67), Expect(3) = 5e-023
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +3
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 651 KKRPNESVSKTPVSGKKAKPAAAPA 725
>gb|CK120238.1|CK120238 208b17.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B17208
5-PRIME, mRNA sequence
Length = 774
Score = 78.0 bits (164), Expect(3) = 6e-023
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 135 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 305
Score = 41.8 bits (85), Expect(3) = 6e-023
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 27 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 155
Score = 33.6 bits (67), Expect(3) = 6e-023
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +3
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 651 KKRPNESVSKTPVSGKKAKPAAAPA 725
>gb|CK120542.1|CK120542 207e07.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011E07207
5-PRIME, mRNA sequence
Length = 781
Score = 78.0 bits (164), Expect(3) = 6e-023
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +1
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 163 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 333
Score = 41.8 bits (85), Expect(3) = 6e-023
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +1
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 55 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 183
Score = 33.6 bits (67), Expect(3) = 6e-023
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +1
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 679 KKRPNESVSKTPVSGKKAKPAAAPA 753
>emb|AL162506.1|ATF17C15 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project)
Length = 102897
Score = 70.7 bits (148), Expect(4) = 7e-023
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +1
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 77791 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 77946
Score = 59.7 bits (124), Expect(4) = 7e-023
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = -1 / +3
Query: 382 EKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 278
+++PKS G+ CKSC++TF SEM LQ+H+KAKH A
Sbjct: 79107 QQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSA 79211
Score = 31.8 bits (63), Expect(4) = 7e-023
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1 / +3
Query: 475 AQKTGGKKGATHVATPHPAKGKTPANNDKSTEKSPK 368
+ K KK HVATPHP+K + ST ++ K
Sbjct: 78996 SDKADSKKPHVHVATPHPSKQAGKNSGGGSTGETSK 79103
Score = 30.4 bits (60), Expect(4) = 7e-023
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1 / +2
Query: 1177 FWGLEVKPGSTVKCEPGHGFILHVSQAAL 1091
F G+EVK G + +PG ++H+SQ L
Sbjct: 77591 FAGVEVKNGKPLHLDPGLDRLVHISQVLL 77677
>gb|BP823613.1|BP823613 BP823613 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-65-L21 5',
mRNA sequence
Length = 379
Score = 71.6 bits (150), Expect(2) = 7e-023
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF KEFELSHT SV+F GYK
Sbjct: 156 KNKKGEFVPLHVKVGNQNLVMGTLSTENIPQLFCDLVFEKEFELSHTGGKGSVYFVGYK 332
Score = 58.8 bits (122), Expect(2) = 7e-023
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G TVK P G ++HVSQ +LGE K
Sbjct: 51 AMEFWGIEVKSGKTVKVTPEEGILIHVSQESLGECK 158
>gb|CK118104.1|CK118104 218b13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B13218
5-PRIME, mRNA sequence
Length = 753
Score = 78.0 bits (164), Expect(3) = 2e-022
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 135 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 305
Score = 41.8 bits (85), Expect(3) = 2e-022
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
+MEFWG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 27 TMEFWGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 155
Score = 31.8 bits (63), Expect(3) = 2e-022
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1 / +3
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KK K A PA
Sbjct: 651 KKRPNESVSKTPVSGKKGKPAAAPA 725
>gb|BP865197.1|BP865197 BP865197 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-73-E09 5',
mRNA sequence
Length = 366
Score = 72.5 bits (152), Expect(2) = 3e-022
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +2
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 164 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLSCDLVFDKEFELSHTWGKGSVYFVGYK 340
Score = 55.6 bits (115), Expect(2) = 3e-022
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +2
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 59 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 166
>gb|AV821267.1|AV821267 AV821267 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-05-D06 5', mRNA
sequence
Length = 604
Score = 70.7 bits (148), Expect(2) = 5e-022
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 243 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 398
Score = 57.0 bits (118), Expect(2) = 5e-022
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 93 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 224
>gb|AV552636.1|AV552636 AV552636 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ35a03R 5', mRNA sequence
Length = 572
Score = 70.7 bits (148), Expect(2) = 5e-022
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 231 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 386
Score = 57.0 bits (118), Expect(2) = 5e-022
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 81 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 212
>gb|AV524528.1|AV524528 AV524528 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APD04g08R 5', mRNA
sequence
Length = 458
Score = 70.7 bits (148), Expect(2) = 5e-022
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 228 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLERNFALSHTWKNGSVFFSGYKVD 383
Score = 57.0 bits (118), Expect(2) = 5e-022
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 78 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 209
>gb|BE520370.1|BE520370 M12A1STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
M12A1 5', mRNA sequence
Length = 408
Score = 70.3 bits (147), Expect(2) = 6e-022
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 1060 MYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKVE 905
+YV V KL IGTLS +K+PQ+ ++V + F LSHT K SVFFSGYKV+
Sbjct: 210 LYVTVGSDKLLIGTLSHEKFPQLSTEIVLXRNFALSHTWKNGSVFFSGYKVD 365
Score = 57.0 bits (118), Expect(2) = 6e-022
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = -1 / +3
Query: 1204 VSAPPPSMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKS 1073
++ P +MEFWG+EVK G + +PG ++H+SQ ALGESK +
Sbjct: 60 ITLPRTTMEFWGVEVKNGKPLHLDPGLDRLVHISQVALGESKNN 191
>gb|BP820599.1|BP820599 BP820599 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-55-B05 5',
mRNA sequence
Length = 396
Score = 71.2 bits (149), Expect(2) = 9e-022
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 162 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 338
Score = 55.6 bits (115), Expect(2) = 9e-022
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 57 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 164
>gb|BP844017.1|BP844017 BP844017 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-88-M12 5',
mRNA sequence
Length = 387
Score = 71.2 bits (149), Expect(2) = 9e-022
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 162 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 338
Score = 55.6 bits (115), Expect(2) = 9e-022
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 57 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 164
>gb|BP865405.1|BP865405 BP865405 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-74-A14 5',
mRNA sequence
Length = 381
Score = 71.2 bits (149), Expect(2) = 9e-022
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +2
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 164 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 340
Score = 55.6 bits (115), Expect(2) = 9e-022
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +2
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 59 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 166
>gb|BP826434.1|BP826434 BP826434 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-72-A15 5',
mRNA sequence
Length = 370
Score = 71.2 bits (149), Expect(2) = 9e-022
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 165 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 341
Score = 55.6 bits (115), Expect(2) = 9e-022
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 60 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 167
>gb|BP829318.1|BP829318 BP829318 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-81-L02 5',
mRNA sequence
Length = 366
Score = 71.2 bits (149), Expect(2) = 9e-022
Identities = 30/59 (50%), Positives = 42/59 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
++KK + ++VKV ++ L +GTLS + PQ+ DLVF+KEFELSHT SV+F GYK
Sbjct: 165 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVFDKEFELSHTWGKGSVYFVGYK 341
Score = 55.6 bits (115), Expect(2) = 9e-022
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -1 / +3
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESK 1079
+MEFWG+EVK G V P G ++HVSQA+LGE K
Sbjct: 60 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGECK 167
>gb|BP851161.1|BP851161 BP851161 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-15-H15 5',
mRNA sequence
Length = 415
Score = 71.2 bits (149), Expect(2) = 8e-021
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = -1 / +3
Query: 1087 ESKKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYKV 908
++KK + ++VKV ++ L +GTLS + PQ+ DLV++KEFELSHT SV+F GYK+
Sbjct: 165 KNKKGEFVPLHVKVGNQNLVLGTLSTENIPQLFCDLVYDKEFELSHTWGKGSVYFVGYKI 344
Score = 52.4 bits (108), Expect(2) = 8e-021
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -1 / +2
Query: 1186 SMEFWGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSD 1070
+MEFWG+EVK G V P G ++HVSQA+LG K +
Sbjct: 59 AMEFWGIEVKSGKPVTVTPEEGILIHVSQASLGRM*KQE 175
>gb|BU634928.1|BU634928 002G09 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 738
Score = 78.0 bits (164), Expect(3) = 1e-020
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = -1 / +3
Query: 1081 KKSDSALMYVKVDDKKLAIGTLSIDKYPQIQFDLVFNKEFELSHTSKTTSVFFSGYK 911
K +S ++ V V KL IGTLS DK+PQI FDLVF+KEFELSH+ +V F GYK
Sbjct: 123 KSGESVVLSVTVGGAKLVIGTLSQDKFPQISFDLVFDKEFELSHSGTKANVHFIGYK 293
Score = 34.1 bits (68), Expect(3) = 1e-020
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1 / +3
Query: 1174 WGLEVKPGSTVKCEPGHGFILHVSQAALGESKKSDSALM 1058
WG+ V P + K P ++H+SQA+L + KS +++
Sbjct: 27 WGVAVTPKNATKVTPEEDSLVHISQASLDCTVKSGESVV 143
Score = 33.6 bits (67), Expect(3) = 1e-020
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / +3
Query: 547 KKRGAENALKTPLSDKKAKVATPPA 473
KKR E+ KTP+S KKAK A PA
Sbjct: 639 KKRPNESVSKTPVSGKKAKPAAAPA 713
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,492,927,738
Number of Sequences: 1013581
Number of extensions: 38093189
Number of successful extensions: 206834
Number of sequences better than 1.0e-020: 53
length of database: 302,980,290
effective HSP length: 57
effective length of database: 245,206,173
effective search space used: 91707108702
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)