BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT2a11.yg.2.1
(532 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA621021.1|CA621021 wl1n.pk0070.h9 wl1n Triticum aestivu... 143 1e-032
gb|CA618016.1|CA618016 wl1n.pk0029.a2 wl1n Triticum aestivu... 139 2e-031
>gb|CA621021.1|CA621021 wl1n.pk0070.h9 wl1n Triticum aestivum cDNA clone wl1n.pk0070.h9 5'
end, mRNA sequence
Length = 588
Score = 143 bits (72), Expect = 1e-032
Identities = 124/147 (84%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 265 tccttcatgtagngcgtgcagtnnttgttgcggtcgacgtanncnatgccataacgttcg 324
|||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct: 400 tccttcatgtagcgcgtgcagttattgttgcggtcgacgtagacaatgccataacgttcg 341
Query: 325 gtgaagccggcgaaccattcaaagttgtcc-ancnnnnnccaagcgaagtnnncttgcac 383
||||||||||| |||||||||||||||||| | | ||||||||||| |||||||
Sbjct: 340 gtgaagccggcaaaccattcaaagttgtcccagcagagaccaagcgaagtagccttgcac 281
Query: 384 atttgatcccangnnnantgattcctt 410
|||| |||||| | | |||||||||
Sbjct: 280 atttnatcccaagtctattgattcctt 254
>gb|CA618016.1|CA618016 wl1n.pk0029.a2 wl1n Triticum aestivum cDNA clone wl1n.pk0029.a2 5'
end, mRNA sequence
Length = 559
Score = 139 bits (70), Expect = 2e-031
Identities = 124/146 (84%), Gaps = 2/146 (1%)
Strand = Plus / Minus
Query: 265 tccttcatgtagngcgtgcagtnnttgttgcggtcgacgtanncnatgccataacgttcg 324
|||||||||||| ||||||||| ||||||||||||||||| | || ||||||||||||
Sbjct: 358 tccttcatgtagcgcgtgcagttattgttgcggtcgacgtagacaat-ccataacgttcg 300
Query: 325 gtgaagccggcgaaccattcaaagttgtccancnnnnnccaagcgaagtnnncttgcaca 384
||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||
Sbjct: 299 gtgaagccggc-aaccattcaaagttgtccagcagagaccaagcgaagtagccttgcaca 241
Query: 385 tttgatcccangnnnantgattcctt 410
|||||||||| | | |||||||||
Sbjct: 240 tttgatcccaagtctattgattcctt 215
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,424
Number of Sequences: 636343
Number of extensions: 42424
Number of successful extensions: 10635
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10630
Number of HSP's gapped (non-prelim): 3
length of query: 532
length of database: 367,240,239
effective HSP length: 19
effective length of query: 513
effective length of database: 355,149,722
effective search space: 182191807386
effective search space used: 182191807386
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)