BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ167130.1|BQ167130 WHE0946_F09_K18ZY Wheat 5-15 DAP spi... 274 4e-072
emb|AJ582182.1|TAE582182 Triticum aestivum mRNA for putativ... 274 4e-072
gb|CD907374.1|CD907374 G468.106L19R010929 G468 Triticum aes... 266 1e-069
gb|CD907433.1|CD907433 G468.106O06F010813 G468 Triticum aes... 212 1e-053
gb|CA602908.1|CA602908 wr1.pk0007.e11 wr1 Triticum aestivum... 170 5e-041
gb|CA661821.1|CA661821 wlmk1.pk0008.b8 wlmk1 Triticum aesti... 121 4e-026
gb|CA502151.1|CA502151 WHE4043_D07_H13ZT Wheat meiotic anth... 113 9e-024
gb|BF474155.1|BF474155 WHE0838_G02_M04ZS Wheat vernalized c... 36 1.7
gb|CA485834.1|CA485834 WHE4323_F07_L13ZS Wheat meiotic anth... 36 1.7
gb|CV759100.1|CV759100 FGAS053482 Triticum aestivum FGAS: L... 36 1.7
gb|DQ157841.1| Triticum turgidum strain Langdon chromosome ... 36 1.7
gb|BF473089.1|BF473089 WHE0925_E06_I11ZS Wheat 5-15 DAP spi... 34 6.8
gb|BQ160809.1|BQ160809 WHE0329_F01_K01ZT Wheat unstressed s... 34 6.8
gb|BQ239126.1|BQ239126 TaE05036H07R TaE05 Triticum aestivum... 34 6.8
gb|BQ487407.1|BQ487407 WHE2317_H07_O13ZY Wheat pre-anthesis... 34 6.8
gb|CA500304.1|CA500304 WHE4017_G11_M21ZT Wheat meiotic anth... 34 6.8
gb|CA656411.1|CA656411 wlm0.pk0035.b9 wlm0 Triticum aestivu... 34 6.8
gb|CD915869.1|CD915869 G550.128E24F010717 G550 Triticum aes... 34 6.8
gb|CV760191.1|CV760191 FGAS054575 Triticum aestivum FGAS: L... 34 6.8
gb|CV781682.1|CV781682 FGAS076094 Triticum aestivum FGAS: L... 34 6.8
>gb|BQ167130.1|BQ167130 WHE0946_F09_K18ZY Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0946_F09_K18, mRNA sequence
Length = 701
Score = 274 bits (138), Expect = 4e-072
Identities = 309/366 (84%)
Strand = Plus / Plus
Query: 29 tgggtaaattctgtatagtttcaggtcatccccacctctaatactcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| |||||| | ||||||||||||
Sbjct: 292 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 351
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcagattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct: 352 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 411
Query: 149 tcccagtgttaactggcccgatctcatataaatgctctctgacttaaaccgccctctctc 208
||| | |||||||| | ||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 412 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 471
Query: 209 tcggataaacaagtggtaaactgtcccctttttgctggaacagctacaaggtcgatttgt 268
|| || ||| |||||||| ||||| || |||||||||| || ||||| | ||||| |
Sbjct: 472 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 531
Query: 269 aaattttggagtcctttcctcctttaaatgaatcttggtagcaatatgtatacaaagacg 328
||||||||| || ||||| || ||| |||||||| ||||| |||||||| ||||| ||
Sbjct: 532 aaattttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcg 591
Query: 329 acaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagatggaccatc 388
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 592 acaggatgaatgaaccgctgccatgtcaataagtgccttgaaagaatcagatggaccatc 651
Query: 389 atactt 394
|||||
Sbjct: 652 gtactt 657
>emb|AJ582182.1|TAE582182 Triticum aestivum mRNA for putative glycoprotein
3-alpha-L-fucosyltransferase (core3ft gene)
Length = 1750
Score = 274 bits (138), Expect = 4e-072
Identities = 309/366 (84%)
Strand = Plus / Minus
Query: 29 tgggtaaattctgtatagtttcaggtcatccccacctctaatactcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| |||||| | ||||||||||||
Sbjct: 1417 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 1358
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcagattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct: 1357 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 1298
Query: 149 tcccagtgttaactggcccgatctcatataaatgctctctgacttaaaccgccctctctc 208
||| | |||||||| | ||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 1297 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 1238
Query: 209 tcggataaacaagtggtaaactgtcccctttttgctggaacagctacaaggtcgatttgt 268
|| || ||| |||||||| ||||| || |||||||||| || ||||| | ||||| |
Sbjct: 1237 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 1178
Query: 269 aaattttggagtcctttcctcctttaaatgaatcttggtagcaatatgtatacaaagacg 328
||||||||| || ||||| || ||| |||||||| ||||| |||||||| ||||| ||
Sbjct: 1177 aaattttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcg 1118
Query: 329 acaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagatggaccatc 388
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 1117 acaggatgaatgaaccgctgccatgtcaataagtgccttgaaagaatcagatggaccatc 1058
Query: 389 atactt 394
|||||
Sbjct: 1057 gtactt 1052
>gb|CD907374.1|CD907374 G468.106L19R010929 G468 Triticum aestivum cDNA clone G468106L19,
mRNA sequence
Length = 769
Score = 266 bits (134), Expect = 1e-069
Identities = 309/366 (84%), Gaps = 1/366 (0%)
Strand = Plus / Plus
Query: 29 tgggtaaattctgtatagtttcaggtcatccccacctctaatactcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| |||||| | ||||||||||||
Sbjct: 300 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 359
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcagattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct: 360 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 419
Query: 149 tcccagtgttaactggcccgatctcatataaatgctctctgacttaaaccgccctctctc 208
||| | |||||||| | ||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 420 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 479
Query: 209 tcggataaacaagtggtaaactgtcccctttttgctggaacagctacaaggtcgatttgt 268
|| || ||| |||||||| ||||| || |||||||||| || ||||| | ||||| |
Sbjct: 480 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 539
Query: 269 aaattttggagtcctttcctcctttaaatgaatcttggtagcaatatgtatacaaagacg 328
||||||||| || ||||| || ||| |||||||| ||||| |||||||| ||||| ||
Sbjct: 540 aaattttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcg 599
Query: 329 acaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagatggaccatc 388
||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 600 acaggatgaatgaaccgctgccatgtc-ataagtgccttgaaagaatcagatggaccatc 658
Query: 389 atactt 394
|||||
Sbjct: 659 gtactt 664
>gb|CD907433.1|CD907433 G468.106O06F010813 G468 Triticum aestivum cDNA clone G468106O06,
mRNA sequence
Length = 653
Score = 212 bits (107), Expect = 1e-053
Identities = 254/303 (83%)
Strand = Plus / Minus
Query: 92 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcagattccaaggctcc 151
|||||||||||| || |||||||| ||||||||||| || | ||||| ||| | |||||
Sbjct: 653 ccatacaggaacatgcttgagggatctaaatttaccatgcccggcagactcccaagctcc 594
Query: 152 cagtgttaactggcccgatctcatataaatgctctctgacttaaaccgccctctctctcg 211
| |||||||| | ||||| | |||||||||||||| ||||||||||||||||||||
Sbjct: 593 taaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctctct 534
Query: 212 gataaacaagtggtaaactgtcccctttttgctggaacagctacaaggtcgatttgtaaa 271
|| ||| |||||||| ||||| || |||||||||| || ||||| | ||||| ||||
Sbjct: 533 gacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcataaa 474
Query: 272 ttttggagtcctttcctcctttaaatgaatcttggtagcaatatgtatacaaagacgaca 331
|||||| || ||||| || ||| |||||||| ||||| |||||||| ||||| |||||
Sbjct: 473 ttttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcgaca 414
Query: 332 agatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagatggaccatcata 391
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||
Sbjct: 413 ggatgaatgaaccgctgccatgtcaataagtgccttgaaagaatcagatggaccatcgta 354
Query: 392 ctt 394
|||
Sbjct: 353 ctt 351
>gb|CA602908.1|CA602908 wr1.pk0007.e11 wr1 Triticum aestivum cDNA clone wr1.pk0007.e11 5'
end, mRNA sequence
Length = 487
Score = 170 bits (86), Expect = 5e-041
Identities = 215/258 (83%)
Strand = Plus / Minus
Query: 29 tgggtaaattctgtatagtttcaggtcatccccacctctaatactcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| |||||| | ||||||||||||
Sbjct: 264 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 205
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcagattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct: 204 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 145
Query: 149 tcccagtgttaactggcccgatctcatataaatgctctctgacttaaaccgccctctctc 208
||| | |||||||| | ||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 144 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 85
Query: 209 tcggataaacaagtggtaaactgtcccctttttgctggaacagctacaaggtcgatttgt 268
|| || ||| |||||||| ||||| || |||||||||| || ||||| | ||||| |
Sbjct: 84 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 25
Query: 269 aaattttggagtcctttc 286
||||||||| || |||||
Sbjct: 24 aaattttggcgttctttc 7
>gb|CA661821.1|CA661821 wlmk1.pk0008.b8 wlmk1 Triticum aestivum cDNA clone wlmk1.pk0008.b8
5' end, mRNA sequence
Length = 600
Score = 121 bits (61), Expect = 4e-026
Identities = 82/89 (92%)
Strand = Plus / Minus
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcgataagagct 365
||||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 218 gtagcgatatgtatgcaaaggcgacaggatgaatgaaccgctgccatgtcaataagtgcc 159
Query: 366 ttgaaagaatcagatggaccatcatactt 394
|||||||||||||||||||||||||||||
Sbjct: 158 ttgaaagaatcagatggaccatcatactt 130
Score = 50.1 bits (25), Expect = 1e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 88 ccttccatacaggaacgtggttgagggacctaaatt 123
|||||||||||||||| || |||||||| |||||||
Sbjct: 430 ccttccatacaggaacatgtttgaggganctaaatt 395
>gb|CA502151.1|CA502151 WHE4043_D07_H13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4043_D07_H13, mRNA sequence
Length = 534
Score = 113 bits (57), Expect = 9e-024
Identities = 135/161 (83%)
Strand = Plus / Minus
Query: 29 tgggtaaattctgtatagtttcaggtcatccccacctctaatactcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| |||||| | ||||||||||||
Sbjct: 201 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 142
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcagattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| ||||| ||||| ||
Sbjct: 141 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 82
Query: 149 tcccagtgttaactggcccgatctcatataaatgctctctg 189
||| | |||||||| | ||||| | ||||||||||||||
Sbjct: 81 tcctaaagttaactgatctgatcttagataaatgctctctg 41
>gb|BF474155.1|BF474155 WHE0838_G02_M04ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0838_G02_M04, mRNA sequence
Length = 499
Score = 36.2 bits (18), Expect = 1.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 238 ttttgctggaacagctacaagg 259
||||||||||||||| ||||||
Sbjct: 140 ttttgctggaacagcaacaagg 161
>gb|CA485834.1|CA485834 WHE4323_F07_L13ZS Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4323_F07_L13, mRNA sequence
Length = 664
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 328 gacaagatgaatgaaccg 345
||||||||||||||||||
Sbjct: 381 gacaagatgaatgaaccg 364
>gb|CV759100.1|CV759100 FGAS053482 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 847
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 86 atccttccatacaggaac 103
||||||||||||||||||
Sbjct: 530 atccttccatacaggaac 513
>gb|DQ157841.1| Triticum turgidum strain Langdon chromosome 1 clone BAC 1219A5 map 1BS,
WORKING DRAFT SEQUENCE, 16 unordered pieces
Length = 105039
Score = 36.2 bits (18), Expect = 1.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 285 tcctcctttaaatgaatc 302
||||||||||||||||||
Sbjct: 73407 tcctcctttaaatgaatc 73390
>gb|BF473089.1|BF473089 WHE0925_E06_I11ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0925_E06_I11, mRNA sequence
Length = 513
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 236 ctttttgctggaacagc 252
|||||||||||||||||
Sbjct: 438 ctttttgctggaacagc 422
>gb|BQ160809.1|BQ160809 WHE0329_F01_K01ZT Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0329_F01_K01, mRNA
sequence
Length = 640
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 285 tcctcctttaaatgaat 301
|||||||||||||||||
Sbjct: 370 tcctcctttaaatgaat 354
>gb|BQ239126.1|BQ239126 TaE05036H07R TaE05 Triticum aestivum cDNA clone TaE05036H07R, mRNA
sequence
Length = 270
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 226 aaactgtcccctttttg 242
|||||||||||||||||
Sbjct: 212 aaactgtcccctttttg 196
>gb|BQ487407.1|BQ487407 WHE2317_H07_O13ZY Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2317_H07_O13, mRNA sequence
Length = 444
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 374 atcagatggaccatcat 390
|||||||||||||||||
Sbjct: 140 atcagatggaccatcat 156
>gb|CA500304.1|CA500304 WHE4017_G11_M21ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4017_G11_M21, mRNA sequence
Length = 680
Score = 34.2 bits (17), Expect = 6.8
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 362 agctttgaaagaatcagatgg 382
|||||||| ||||||||||||
Sbjct: 384 agctttgagagaatcagatgg 364
>gb|CA656411.1|CA656411 wlm0.pk0035.b9 wlm0 Triticum aestivum cDNA clone wlm0.pk0035.b9 5'
end, mRNA sequence
Length = 482
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 374 atcagatggaccatcat 390
|||||||||||||||||
Sbjct: 296 atcagatggaccatcat 280
>gb|CD915869.1|CD915869 G550.128E24F010717 G550 Triticum aestivum cDNA clone G550128E24,
mRNA sequence
Length = 480
Score = 34.2 bits (17), Expect = 6.8
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 362 agctttgaaagaatcagatgg 382
|||||||| ||||||||||||
Sbjct: 434 agctttgagagaatcagatgg 414
>gb|CV760191.1|CV760191 FGAS054575 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 823
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 367 tgaaagaatcagatgga 383
|||||||||||||||||
Sbjct: 201 tgaaagaatcagatgga 185
>gb|CV781682.1|CV781682 FGAS076094 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 820
Score = 34.2 bits (17), Expect = 6.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 362 agctttgaaagaatcag 378
|||||||||||||||||
Sbjct: 766 agctttgaaagaatcag 750
Database: Triticum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:43 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,142
Number of Sequences: 636343
Number of extensions: 58142
Number of successful extensions: 14856
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14825
Number of HSP's gapped (non-prelim): 29
length of query: 394
length of database: 367,240,239
effective HSP length: 19
effective length of query: 375
effective length of database: 355,149,722
effective search space: 133181145750
effective search space used: 133181145750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)