BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ582182.1|TAE582182 Triticum aestivum mRNA for putativ... 422 e-116
gb|BQ167130.1|BQ167130 WHE0946_F09_K18ZY Wheat 5-15 DAP spi... 305 2e-081
gb|CD907374.1|CD907374 G468.106L19R010929 G468 Triticum aes... 283 7e-075
gb|CA661821.1|CA661821 wlmk1.pk0008.b8 wlmk1 Triticum aesti... 280 1e-073
gb|CD907433.1|CD907433 G468.106O06F010813 G468 Triticum aes... 216 1e-054
gb|CA602908.1|CA602908 wr1.pk0007.e11 wr1 Triticum aestivum... 163 2e-038
gb|CA502151.1|CA502151 WHE4043_D07_H13ZT Wheat meiotic anth... 105 4e-021
gb|BG263065.1|BG263065 WHE0946_F09_K18ZS Wheat 5-15 DAP spi... 98 9e-019
>emb|AJ582182.1|TAE582182 Triticum aestivum mRNA for putative glycoprotein
3-alpha-L-fucosyltransferase (core3ft gene)
Length = 1750
Score = 422 bits (213), Expect = e-116
Identities = 444/522 (85%)
Strand = Plus / Minus
Query: 29 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| ||| || | ||||||||||||
Sbjct: 1417 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 1358
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 1357 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 1298
Query: 149 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 208
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 1297 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 1238
Query: 209 tcggataaataagtggtaaattgttccctttttggtggaacagctacaaggacgatttgt 268
|| || |||||||||||| | |||||| ||||| |||| || ||||| | ||||| |
Sbjct: 1237 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 1178
Query: 269 aaattttggagtcctttcctcctttaaatggatcttggtagcaatatgtatacaaagacg 328
||||||||| || ||||| || ||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 1177 aaattttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcg 1118
Query: 329 acaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggatggaccatc 388
||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1117 acaggatgaatgaaccgctgccatgtcaataagtgccttgaaagaatcagatggaccatc 1058
Query: 389 atacttccacctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgt 448
||||||||||||||||||||||| || |||||||| || || ||||||| |||||||||
Sbjct: 1057 gtacttccacctcaaagattgattaaaagcatcaggattcgatgcaatatgtttcattgt 998
Query: 449 cttagcaactgaagcaacatcatcaagctnnttaatatgtaatattgcgccttctcccgg 508
||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct: 997 cttagcaactgaaatgacatcatcaagctccttaatgtgtaatattgcaccttctcctgg 938
Query: 509 agnaaactcttgaatatttggagcaccaacaacaaccggaat 550
|| |||||||||||||||||| || ||||| ||||| |||||
Sbjct: 937 agaaaactcttgaatatttggtgcgccaacgacaactggaat 896
>gb|BQ167130.1|BQ167130 WHE0946_F09_K18ZY Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0946_F09_K18, mRNA sequence
Length = 701
Score = 305 bits (154), Expect = 2e-081
Identities = 346/410 (84%)
Strand = Plus / Plus
Query: 29 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| ||| || | ||||||||||||
Sbjct: 292 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 351
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 352 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 411
Query: 149 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 208
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 412 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 471
Query: 209 tcggataaataagtggtaaattgttccctttttggtggaacagctacaaggacgatttgt 268
|| || |||||||||||| | |||||| ||||| |||| || ||||| | ||||| |
Sbjct: 472 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 531
Query: 269 aaattttggagtcctttcctcctttaaatggatcttggtagcaatatgtatacaaagacg 328
||||||||| || ||||| || ||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 532 aaattttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcg 591
Query: 329 acaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggatggaccatc 388
||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 592 acaggatgaatgaaccgctgccatgtcaataagtgccttgaaagaatcagatggaccatc 651
Query: 389 atacttccacctcaaagattgattgaaggcatcagggtttgaagcaatat 438
||||||||||||||||||||||| || |||||||| || || |||||||
Sbjct: 652 gtacttccacctcaaagattgattaaaagcatcaggattcgatgcaatat 701
>gb|CD907374.1|CD907374 G468.106L19R010929 G468 Triticum aestivum cDNA clone G468106L19,
mRNA sequence
Length = 769
Score = 283 bits (143), Expect = 7e-075
Identities = 359/427 (84%), Gaps = 3/427 (0%)
Strand = Plus / Plus
Query: 29 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| ||| || | ||||||||||||
Sbjct: 300 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 359
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 360 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 419
Query: 149 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 208
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 420 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 479
Query: 209 tcggataaataagtggtaaattgttccctttttggtggaacagctacaaggacgatttgt 268
|| || |||||||||||| | |||||| ||||| |||| || ||||| | ||||| |
Sbjct: 480 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 539
Query: 269 aaattttggagtcctttcctcctttaaatggatcttggtagcaatatgtatacaaagacg 328
||||||||| || ||||| || ||| || ||||| ||||| |||||||| ||||| ||
Sbjct: 540 aaattttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcg 599
Query: 329 acaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggatggaccatc 388
||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 600 acaggatgaatgaaccgctgccatgtc-ataagtgccttgaaagaatcagatggaccatc 658
Query: 389 atacttccacctcaaagattgattgaaggcatcagggtttgaagcaatatttttcattgt 448
||||||||||||||||||| ||| || |||||||| || || || |||| |||||||||
Sbjct: 659 gtacttccacctcaaagatt-attaaaagcatcaggattcgatgc-atatgtttcattgt 716
Query: 449 cttagca 455
|||||||
Sbjct: 717 cttagca 723
>gb|CA661821.1|CA661821 wlmk1.pk0008.b8 wlmk1 Triticum aestivum cDNA clone wlmk1.pk0008.b8
5' end, mRNA sequence
Length = 600
Score = 280 bits (141), Expect = 1e-073
Identities = 198/218 (90%)
Strand = Plus / Minus
Query: 306 gtagcaatatgtatacaaagacgacaagatgaatgaaccgctgccatgtcaataagagct 365
||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 218 gtagcgatatgtatgcaaaggcgacaggatgaatgaaccgctgccatgtcaataagtgcc 159
Query: 366 ttgaaagaatcggatggaccatcatacttccacctcaaagattgattgaaggcatcaggg 425
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 158 ttgaaagaatcagatggaccatcatacttccacctcaaagattgattaaaagcatcagga 99
Query: 426 tttgaagcaatatttttcattgtcttagcaactgaagcaacatcatcaagctnnttaata 485
||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 98 tttgatgcaatatgtttcattgtcttagcaactgaaatgacatcatcaagctccttaata 39
Query: 486 tgtaatattgcgccttctcccggagnaaactcttgaat 523
||||||||||| |||||||| |||| ||||||||||||
Sbjct: 38 tgtaatattgcaccttctcctggagaaaactcttgaat 1
Score = 50.1 bits (25), Expect = 2e-004
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 88 ccttccatacaggaacgtggttgagggacctaaatt 123
|||||||||||||||| || |||||||| |||||||
Sbjct: 430 ccttccatacaggaacatgtttgaggganctaaatt 395
>gb|CD907433.1|CD907433 G468.106O06F010813 G468 Triticum aestivum cDNA clone G468106O06,
mRNA sequence
Length = 653
Score = 216 bits (109), Expect = 1e-054
Identities = 259/309 (83%)
Strand = Plus / Minus
Query: 92 ccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggctcc 151
|||||||||||| || |||||||| ||||||||||| || | || || ||| | |||||
Sbjct: 653 ccatacaggaacatgcttgagggatctaaatttaccatgcccggcagactcccaagctcc 594
Query: 152 cagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctctcg 211
| ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct: 593 taaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctctct 534
Query: 212 gataaataagtggtaaattgttccctttttggtggaacagctacaaggacgatttgtaaa 271
|| |||||||||||| | |||||| ||||| |||| || ||||| | ||||| ||||
Sbjct: 533 gacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcataaa 474
Query: 272 ttttggagtcctttcctcctttaaatggatcttggtagcaatatgtatacaaagacgaca 331
|||||| || ||||| || ||| || ||||| ||||| |||||||| ||||| |||||
Sbjct: 473 ttttggcgttctttcttctttttcgtgaatcttcgtagcgatatgtatgcaaaggcgaca 414
Query: 332 agatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggatggaccatcata 391
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct: 413 ggatgaatgaaccgctgccatgtcaataagtgccttgaaagaatcagatggaccatcgta 354
Query: 392 cttccacct 400
|||||||||
Sbjct: 353 cttccacct 345
>gb|CA602908.1|CA602908 wr1.pk0007.e11 wr1 Triticum aestivum cDNA clone wr1.pk0007.e11 5'
end, mRNA sequence
Length = 487
Score = 163 bits (82), Expect = 2e-038
Identities = 214/258 (82%)
Strand = Plus / Minus
Query: 29 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| ||| || | ||||||||||||
Sbjct: 264 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 205
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 204 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 145
Query: 149 tcccagagttaactggcctgatctcatgtaaatgctctctgacttaaaccgccctctctc 208
||| | ||||||||| ||||||| | ||||||||||||| ||||||||||||||||||
Sbjct: 144 tcctaaagttaactgatctgatcttagataaatgctctctgtcttaaaccgccctctctc 85
Query: 209 tcggataaataagtggtaaattgttccctttttggtggaacagctacaaggacgatttgt 268
|| || |||||||||||| | |||||| ||||| |||| || ||||| | ||||| |
Sbjct: 84 tctgacaaataagtggtatactgttcctcttttgctggagcaactacatgagcgattcat 25
Query: 269 aaattttggagtcctttc 286
||||||||| || |||||
Sbjct: 24 aaattttggcgttctttc 7
>gb|CA502151.1|CA502151 WHE4043_D07_H13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4043_D07_H13, mRNA sequence
Length = 534
Score = 105 bits (53), Expect = 4e-021
Identities = 134/161 (83%)
Strand = Plus / Minus
Query: 29 tgggtaaattctgtataatttcaggtcatccccacctctaatgctcggtggcctttcatc 88
|||||||||| |||| | |||| |||||||| |||| ||| || | ||||||||||||
Sbjct: 201 tgggtaaattttgtacaccttcaactcatccccgcctcgaatacttgatggcctttcatc 142
Query: 89 cttccatacaggaacgtggttgagggacctaaatttaccgagcactgcggattccaaggc 148
||||||||||||||| || |||||||| ||||||||||| |||| || || ||||| ||
Sbjct: 141 cttccatacaggaacatgcttgagggatctaaatttaccatgcacggcagactccaaagc 82
Query: 149 tcccagagttaactggcctgatctcatgtaaatgctctctg 189
||| | ||||||||| ||||||| | |||||||||||||
Sbjct: 81 tcctaaagttaactgatctgatcttagataaatgctctctg 41
>gb|BG263065.1|BG263065 WHE0946_F09_K18ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0946_F09_K18, mRNA sequence
Length = 321
Score = 97.6 bits (49), Expect = 9e-019
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 465 acatcatcaagctnnttaatatgtaatattgcgccttctcccggagnaaactcttgaata 524
||||||||||||| ||||| ||||||||||| |||||||| |||| |||||||||||||
Sbjct: 318 acatcatcaagctccttaatgtgtaatattgcaccttctcctggagaaaactcttgaata 259
Query: 525 tttggagcaccaacaacaaccggaat 550
||||| || ||||| ||||| |||||
Sbjct: 258 tttggtgcgccaacgacaactggaat 233
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 106,622
Number of Sequences: 636343
Number of extensions: 106622
Number of successful extensions: 26033
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26017
Number of HSP's gapped (non-prelim): 13
length of query: 637
length of database: 367,240,239
effective HSP length: 19
effective length of query: 618
effective length of database: 355,149,722
effective search space: 219482528196
effective search space used: 219482528196
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)