BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG16f05.yg.2.1
(585 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY376130.1| Triticum aestivum ETTIN-like auxin response ... 168 3e-040
gb|BJ212985.1|BJ212985 BJ212985 Y. Ogihara unpublished cDNA... 50 2e-004
gb|CA502175.1|CA502175 WHE4043_G07_N13ZT Wheat meiotic anth... 50 2e-004
gb|CD918964.1|CD918964 G608.111I19F010911 G608 Triticum aes... 42 0.042
gb|CB307104.1|CB307104 HFIG089 Hessian fly infested cDNA li... 42 0.042
>gb|AY376130.1| Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha)
mRNA, partial cds
Length = 2015
Score = 168 bits (85), Expect = 3e-040
Identities = 322/401 (80%)
Strand = Plus / Minus
Query: 29 acgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaaagggaa 88
||||||| ||| |||||||| |||| || |||| ||||||||| ||||| || || ||
Sbjct: 806 acgtccacattgccctgagggcacagtttagttcgtttagaactggatgctgacagagac 747
Query: 89 tgagaaacagagacagaaccaccagctatctcgatttcccatggagatactctatcttgg 148
|||| || |||||| || |||||| |||||||||| ||||| ||||||| ||||| ||||
Sbjct: 746 tgagcaatagagaccgagccaccaactatctcgatctcccacggagatagtctattttgg 687
Query: 149 ccattacattcagcaccgtcctcccatcttaccagcaggcttctccacttcgagccaggc 208
| |||||| || | || |||||||||||||||||||||||| |||| || || |||| |
Sbjct: 686 ctattacagtctgtgccatcctcccatcttaccagcaggcttttccattttgaaccagtc 627
Query: 209 catttcatgggatctatttcactaatgcgaacaaccactccagatcgcctttcactaaca 268
|| | ||||| |||| ||| |||| | || || |||||||||||| ||| |||||
Sbjct: 626 cacctaatggggtctacatcattaatacctgtaatcattccagatcgcctctcattaaca 567
Query: 269 tcttcattatggcactgaaagttgatccttgctccaatacagactggatgattgaggctc 328
|||||| | | |||||| || | ||| ||||||||| | |||| |||| ||||||
Sbjct: 566 tcttcactcccgtactgaatcttaaacctcattccaatacaaaatggacgattcaggctc 507
Query: 329 ttcaggaacttagcgtatggaataatatattctgaagcagtagctcttggattgtaagaa 388
||||||||||| ||| ||||||||| |||| || |||| |||||||||||||||| |
Sbjct: 506 ttcaggaacttccagtacggaataataaattcggatgcagcagctcttggattgtaacag 447
Query: 389 atgtgaaaaacacttctgttcttcaaggaatcagctacagc 429
||||||||||||||||| | |||||||||| ||| |||||
Sbjct: 446 atgtgaaaaacacttctatgtttcaaggaattagccacagc 406
>gb|BJ212985.1|BJ212985 BJ212985 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh20d18 5', mRNA sequence
Length = 491
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 170 tcccatcttaccagcaggcttctccacttcgagccaggccatttcatgggatctatttca 229
|||||||||||| | |||| |||||| || || ||||||||| | ||||| |||| ||||
Sbjct: 327 tcccatcttacctgtaggcatctccattttgatccaggccatcttatggggtctacttca 268
Query: 230 ctaat 234
|||||
Sbjct: 267 ctaat 263
>gb|CA502175.1|CA502175 WHE4043_G07_N13ZT Wheat meiotic anther cDNA library Triticum
aestivum cDNA clone WHE4043_G07_N13, mRNA sequence
Length = 777
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 170 tcccatcttaccagcaggcttctccacttcgagccaggccatttcatgggatctatttca 229
|||||||||||| | |||| |||||| || || ||||||||| | ||||| |||| ||||
Sbjct: 246 tcccatcttacctgtaggcatctccattttgatccaggccatcttatggggtctacttca 187
Query: 230 ctaat 234
|||||
Sbjct: 186 ctaat 182
>gb|CD918964.1|CD918964 G608.111I19F010911 G608 Triticum aestivum cDNA clone G608111I19,
mRNA sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.042
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 170 tcccatcttaccagcaggcttctccacttcgagccaggccatttcatgggatctatttca 229
|||||||||||| | |||| |||||| || || ||||||||| | ||||| || | ||||
Sbjct: 83 tcccatcttacctgtaggcatctccattttgatccaggccatcttatggggtcaacttca 24
Query: 230 ctaat 234
|||||
Sbjct: 23 ctaat 19
>gb|CB307104.1|CB307104 HFIG089 Hessian fly infested cDNA library Triticum aestivum cDNA,
mRNA sequence
Length = 698
Score = 42.1 bits (21), Expect = 0.042
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 170 tcccatcttaccagcaggcttctccacttcgagccaggccatttcatgggatctatttca 229
|||||||||||| | |||| |||||| || || ||||||||| | ||||| || | ||||
Sbjct: 208 tcccatcttacctgtaggcatctccattttgatccaggccatcttatggggtcaacttca 149
Query: 230 ctaat 234
|||||
Sbjct: 148 ctaat 144
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,996
Number of Sequences: 636343
Number of extensions: 79996
Number of successful extensions: 24902
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24895
Number of HSP's gapped (non-prelim): 7
length of query: 585
length of database: 367,240,239
effective HSP length: 19
effective length of query: 566
effective length of database: 355,149,722
effective search space: 201014742652
effective search space used: 201014742652
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)