BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA17a05.yg.2.1
(548 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE498794.1|BE498794 WHE0966_G09_N18ZS Wheat pre-anthesis... 161 6e-038
gb|CD454064.1|CD454064 WHE0966_G09_N18ZT CS wheat pre-anthe... 161 6e-038
gb|CD918504.1|CD918504 G608.109L01F010907 G608 Triticum aes... 161 6e-038
gb|BJ255304.1|BJ255304 BJ255304 Y. Ogihara unpublished cDNA... 100 2e-019
gb|BF199557.1|BF199557 WHE0591-0594_O16_O16ZE Triticum mono... 98 8e-019
gb|BJ218345.1|BJ218345 BJ218345 Y. Ogihara unpublished cDNA... 98 8e-019
gb|BJ249054.1|BJ249054 BJ249054 Y. Ogihara unpublished cDNA... 74 1e-011
gb|BJ247659.1|BJ247659 BJ247659 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BJ253760.1|BJ253760 BJ253760 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BJ291130.1|BJ291130 BJ291130 Y. Ogihara unpublished cDNA... 60 2e-007
gb|BJ297738.1|BJ297738 BJ297738 Y. Ogihara unpublished cDNA... 60 2e-007
gb|CD872897.1|CD872897 AZO2.121N15F010209 AZO2 Triticum aes... 60 2e-007
gb|AL830360.1|AL830360 AL830360 q:343 Triticum aestivum cDN... 52 4e-005
gb|CA593233.1|CA593233 wpa1c.pk003.d20 wpa1c Triticum aesti... 52 4e-005
gb|CD872898.1|CD872898 AZO2.121N15R010521 AZO2 Triticum aes... 52 4e-005
gb|DN828796.1|DN828796 KUCD01_03_D02_T3 WSWR cDNA library T... 50 2e-004
gb|BE493730.1|BE493730 WHE0574_F12_L24ZE Triticum monococcu... 44 0.010
gb|BJ260192.1|BJ260192 BJ260192 Y. Ogihara unpublished cDNA... 44 0.010
gb|BJ265891.1|BJ265891 BJ265891 Y. Ogihara unpublished cDNA... 44 0.010
gb|CA704545.1|CA704545 wdk1c.pk011.g17 wdk1c Triticum aesti... 44 0.010
gb|CD892844.1|CD892844 G118.122B24R010926 G118 Triticum aes... 44 0.010
gb|CD491602.1|CD491602 WHE3092_C12_E24ZT CS wheat cold-stre... 40 0.16
>gb|BE498794.1|BE498794 WHE0966_G09_N18ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0966_G09_N18, mRNA sequence
Length = 462
Score = 161 bits (81), Expect = 6e-038
Identities = 108/117 (92%)
Strand = Plus / Minus
Query: 314 gacagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 373
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gacagtttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 154
Query: 374 ttgtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcg 430
||||||||||| ||| ||||||||||| |||||||||| | |||||||| ||||||
Sbjct: 153 ttgtccacgcacccgtactggcagaacttccagctgtgaatgtactgcaccggggcg 97
Score = 73.8 bits (37), Expect = 1e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||| || || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 82 gttgtaatcttcgacccacatgcccatgctcacatcctccatcttgaacagcc 30
>gb|CD454064.1|CD454064 WHE0966_G09_N18ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0966_G09_N18, mRNA sequence
Length = 726
Score = 161 bits (81), Expect = 6e-038
Identities = 108/117 (92%)
Strand = Plus / Plus
Query: 314 gacagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 373
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gacagtttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 658
Query: 374 ttgtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcg 430
||||||||||| ||| ||||||||||| |||||||||| | |||||||| ||||||
Sbjct: 659 ttgtccacgcacccgtactggcagaacttccagctgtgaatgtactgcaccggggcg 715
>gb|CD918504.1|CD918504 G608.109L01F010907 G608 Triticum aestivum cDNA clone G608109L01,
mRNA sequence
Length = 710
Score = 161 bits (81), Expect = 6e-038
Identities = 108/117 (92%)
Strand = Plus / Minus
Query: 314 gacagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 373
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gacagtttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtag 112
Query: 374 ttgtccacgcagccgaactggcagaacctccagctgtggacatactgcacgggggcg 430
||||||||||| ||| ||||||||||| |||||||||| | |||||||| ||||||
Sbjct: 111 ttgtccacgcacccgtactggcagaacttccagctgtgaatgtactgcaccggggcg 55
Score = 40.1 bits (20), Expect = 0.16
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctcc 475
|||||| || || |||||||||||||||||| | ||||||
Sbjct: 40 gttgtaatcttcgacccacatgcccatgctcccatcctcc 1
>gb|BJ255304.1|BJ255304 BJ255304 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23d05 3', mRNA sequence
Length = 618
Score = 99.6 bits (50), Expect = 2e-019
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 314 gacagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagt 371
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagtttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagt 618
>gb|BF199557.1|BF199557 WHE0591-0594_O16_O16ZE Triticum monococcum vegetative apex cDNA
library Triticum monococcum cDNA clone
WHE0591-0594_O16_O16, mRNA sequence
Length = 459
Score = 97.6 bits (49), Expect = 8e-019
Identities = 138/167 (82%), Gaps = 3/167 (1%)
Strand = Plus / Minus
Query: 320 ttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaagtagttgtcc 379
||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||
Sbjct: 368 ttctcccagaggcacagcatctgccccggcgactggtagtgcgccgtgaggtagtcgtcg 309
Query: 380 acgcagccgaactggcagaacctccagctgtggacatactgcacgggggcgctggcgttg 439
||||||| ||||||||||| | || |||||| |||| ||| | ||| ||||| |
Sbjct: 308 gcgcagcccgcctggcagaaccgcgcgccgtggacgtactccac---gccgccggcgtcg 252
Query: 440 tagtcctccacccacatgcccatgctcacgtcctccatcttgaacag 486
| | ||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 251 agctgccccacccacatgcccacgctcacgtcctccatcttggacag 205
>gb|BJ218345.1|BJ218345 BJ218345 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh37e08 3', mRNA sequence
Length = 571
Score = 97.6 bits (49), Expect = 8e-019
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 314 gacagcttctcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaag 370
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gacagtttgtcccagaggcacagcatctgcctgggggactggtagtgcgccgtgaag 571
>gb|BJ249054.1|BJ249054 BJ249054 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23d05 5', mRNA sequence
Length = 629
Score = 73.8 bits (37), Expect = 1e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 436 gttgtagtcctccacccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||| || || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 615 gttgtaatcttcgacccacatgcccatgctcacatcctccatcttgaacagcc 563
>gb|BJ247659.1|BJ247659 BJ247659 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3c24 5', mRNA sequence
Length = 589
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacag 486
|||||||||||||||||||| || ||||||||||||||
Sbjct: 201 acccacatgcccatgctcacatcttccatcttgaacag 164
>gb|BJ253760.1|BJ253760 BJ253760 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3c24 3', mRNA sequence
Length = 589
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacag 486
|||||||||||||||||||| || ||||||||||||||
Sbjct: 426 acccacatgcccatgctcacatcttccatcttgaacag 463
>gb|BJ291130.1|BJ291130 BJ291130 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl21n21 5', mRNA sequence
Length = 326
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacag 486
|||||||||||||||||||| || ||||||||||||||
Sbjct: 294 acccacatgcccatgctcacatcttccatcttgaacag 257
>gb|BJ297738.1|BJ297738 BJ297738 Y. Ogihara unpublished cDNA library, Wh_SL Triticum
aestivum cDNA clone whsl21n21 3', mRNA sequence
Length = 646
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacag 486
|||||||||||||||||||| || ||||||||||||||
Sbjct: 401 acccacatgcccatgctcacatcttccatcttgaacag 438
>gb|CD872897.1|CD872897 AZO2.121N15F010209 AZO2 Triticum aestivum cDNA clone AZO2121N15,
mRNA sequence
Length = 706
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacag 486
|||||||||||||||||||| || ||||||||||||||
Sbjct: 273 acccacatgcccatgctcacatcttccatcttgaacag 236
>gb|AL830360.1|AL830360 AL830360 q:343 Triticum aestivum cDNA clone D08_q343_plate_4, mRNA
sequence
Length = 616
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 548 ccacccacattcccatgctcacgtcttccattttgaagagcc 507
>gb|CA593233.1|CA593233 wpa1c.pk003.d20 wpa1c Triticum aestivum cDNA clone wpa1c.pk003.d20
5' end, mRNA sequence
Length = 575
Score = 52.0 bits (26), Expect = 4e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 447 ccacccacatgcccatgctcacgtcctccatcttgaacagcc 488
|||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 161 ccacccacattcccatgctcacgtcttccattttgaagagcc 120
>gb|CD872898.1|CD872898 AZO2.121N15R010521 AZO2 Triticum aestivum cDNA clone AZO2121N15,
mRNA sequence
Length = 584
Score = 52.0 bits (26), Expect = 4e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 449 acccacatgcccatgctcacgtcctccatcttgaacag 486
|||||||||||||||||||| || ||||||| ||||||
Sbjct: 455 acccacatgcccatgctcacatcttccatctggaacag 492
>gb|DN828796.1|DN828796 KUCD01_03_D02_T3 WSWR cDNA library Triticum aestivum cDNA, mRNA
sequence
Length = 597
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 449 acccacatgcccatgctcacgtcctccatcttg 481
|||||||||||||||||||| || |||||||||
Sbjct: 91 acccacatgcccatgctcacatcttccatcttg 59
>gb|BE493730.1|BE493730 WHE0574_F12_L24ZE Triticum monococcum vegetative apex cDNA library
Triticum monococcum cDNA clone WHE0574_F12_L24, mRNA
sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.010
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 335 agcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactgg 394
||||| ||||| || ||||| |||||||| ||| ||||||| || | ||| || |||||
Sbjct: 245 agcatttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactgg 186
Query: 395 cagaacctccagct 408
|||||| |||||||
Sbjct: 185 cagaacttccagct 172
>gb|BJ260192.1|BJ260192 BJ260192 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh23o06 5', mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.010
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 335 agcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactgg 394
||||| ||||| || ||||| |||||||| ||| ||||||| || | ||| || |||||
Sbjct: 543 agcatttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactgg 484
Query: 395 cagaacctccagct 408
|||||| |||||||
Sbjct: 483 cagaacttccagct 470
>gb|BJ265891.1|BJ265891 BJ265891 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh23o06 3', mRNA sequence
Length = 607
Score = 44.1 bits (22), Expect = 0.010
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 335 agcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactgg 394
||||| ||||| || ||||| |||||||| ||| ||||||| || | ||| || |||||
Sbjct: 389 agcatttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactgg 448
Query: 395 cagaacctccagct 408
|||||| |||||||
Sbjct: 449 cagaacttccagct 462
>gb|CA704545.1|CA704545 wdk1c.pk011.g17 wdk1c Triticum aestivum cDNA clone wdk1c.pk011.g17
5' end, mRNA sequence
Length = 459
Score = 44.1 bits (22), Expect = 0.010
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 335 agcatctgcctgggggactggtagtgcgccgtgaagtagttgtccacgcagccgaactgg 394
||||| ||||| || ||||| |||||||| ||| ||||||| || | ||| || |||||
Sbjct: 103 agcatttgccttggcgactgatagtgcgcagtgtagtagttctcgaggcaaccatactgg 44
Query: 395 cagaacctccagct 408
|||||| |||||||
Sbjct: 43 cagaacttccagct 30
>gb|CD892844.1|CD892844 G118.122B24R010926 G118 Triticum aestivum cDNA clone G118122B24,
mRNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 323 tcccagaggcacagcatctgcctggg 348
||||||||||||| ||||||||||||
Sbjct: 462 tcccagaggcacatcatctgcctggg 487
>gb|CD491602.1|CD491602 WHE3092_C12_E24ZT CS wheat cold-stressed seedling subtracted cDNA
library Triticum aestivum cDNA clone WHE3092_C12_E24,
mRNA sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.16
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 316 cagcttctcccagaggcacagcatctgcctgggggactggtagtgcgc 363
|||||||||||| || |||| ||| |||| |||| ||||||||||||
Sbjct: 341 cagcttctcccacagacacatcataagcctaggggtctggtagtgcgc 388
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,115
Number of Sequences: 636343
Number of extensions: 92115
Number of successful extensions: 24389
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24350
Number of HSP's gapped (non-prelim): 39
length of query: 548
length of database: 367,240,239
effective HSP length: 19
effective length of query: 529
effective length of database: 355,149,722
effective search space: 187874202938
effective search space used: 187874202938
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)