BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064G21F020918.3.1
(705 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV762958.1|CV762958 FGAS057347 Triticum aestivum FGAS: L... 174 5e-042
dbj|D12920.2|WHTHBP1AC Triticum aestivum mRNA for transcrip... 174 5e-042
gb|CV767541.1|CV767541 FGAS061931 Triticum aestivum FGAS: L... 168 3e-040
gb|CD876601.1|CD876601 AZO3.110E20F011010 AZO3 Triticum aes... 159 3e-037
gb|CD876940.1|CD876940 AZO3.111G10F011010 AZO3 Triticum aes... 159 3e-037
gb|BG607113.1|BG607113 WHE2489_E05_J09ZS Triticum monococcu... 127 1e-027
gb|BJ209670.1|BJ209670 BJ209670 Y. Ogihara unpublished cDNA... 107 1e-021
gb|BE430956.1|BE430956 SUN008.H10F991221 ITEC SUN Wheat cDN... 103 2e-020
gb|CA608485.1|CA608485 wr1.pk0091.a5 wr1 Triticum aestivum ... 40 0.20
gb|CA646570.1|CA646570 wre1n.pk0108.g11 wre1n Triticum aest... 40 0.20
gb|CA652397.1|CA652397 wre1n.pk157.e5 wre1n Triticum aestiv... 40 0.20
>gb|CV762958.1|CV762958 FGAS057347 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 811
Score = 174 bits (88), Expect = 5e-042
Identities = 218/266 (81%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 398 aatgggaaagggagatgtggccactaggtccaaatcccagaaatcgtcgacatcacagaa 457
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 458 tgaacagagtacacctactaatcctcctacagcatatcctgactggtcccagtttcaggc 517
Query: 560 atactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgt 619
||||||||||| |||| || |||| | | ||||| ||||| |||||| | ||
Sbjct: 518 atactataatgtccctggtacggctcaaatgaccccgccggcttattttcattcaacggt 577
Query: 620 agctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatgg 679
||||||| | ||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct: 578 ggctccaagtcctcaggggcatccatatatgtggggtccacagatgatgcctccttacgg 637
Query: 680 gacaccaccaccatatgcaacaatgt 705
|||||| |||||||||||||| ||||
Sbjct: 638 gacaccgccaccatatgcaacgatgt 663
>dbj|D12920.2|WHTHBP1AC Triticum aestivum mRNA for transcription factor HBP-1a(c14),
complete cds
Length = 1734
Score = 174 bits (88), Expect = 5e-042
Identities = 218/266 (81%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 227 aatgggaaagggagatgtggccactaggtccaaatcccagaaatcgtcgacagcacagaa 286
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 287 tgaacagagtacacctactaatcctcctacagcatatcctgactggtcccagtttcaggc 346
Query: 560 atactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgt 619
||||||||||| |||| || ||| | | ||||| ||||| |||||| | ||
Sbjct: 347 atactataatgtccctggtacgactcaaatgaccccgccggcttattttcattcaacggt 406
Query: 620 agctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatgg 679
||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 407 ggctccaagtcctcaggggcatccatatatgtggggtccacagatgatgcctccttatgg 466
Query: 680 gacaccaccaccatatgcaacaatgt 705
|||||| |||||||| ||||||||||
Sbjct: 467 gacaccgccaccatacgcaacaatgt 492
>gb|CV767541.1|CV767541 FGAS061931 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 819
Score = 168 bits (85), Expect = 3e-040
Identities = 217/266 (81%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 398 aatgggaaagggagatgtggccactaggtccaaatcccagaaatcgtcgacatcacagaa 457
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 458 tgaacagagtacacctactaatcctcctacagcatatcctgactggtcccagtttcaggc 517
Query: 560 atactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgt 619
||||||||||| |||| || |||| | ||||| ||||| |||||| | ||
Sbjct: 518 atactataatgtccctggtacggctcanatgaccccgccggcttattttcattcaacggt 577
Query: 620 agctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatgg 679
||||||| | ||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct: 578 ggctccaagtcctcaggggcatccatatatgtggggtccacagatgatgcctccttacgg 637
Query: 680 gacaccaccaccatatgcaacaatgt 705
|||||| |||||||||||||| ||||
Sbjct: 638 gacaccgccaccatatgcaacgatgt 663
>gb|CD876601.1|CD876601 AZO3.110E20F011010 AZO3 Triticum aestivum cDNA clone AZO3110E20,
mRNA sequence
Length = 623
Score = 159 bits (80), Expect = 3e-037
Identities = 216/266 (81%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 176 aatgggaaagggagatgtggccactaggtccaaatcccagaaatcgtcgacagcacagaa 235
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 236 tgaacagagtacacctactaatcctcgtacagcatatcctgactggtcccagtttcaggc 295
Query: 560 atactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgt 619
||||||||||| |||| || |||| | | ||||||||||| |||||| | ||
Sbjct: 296 atactataatgtccctggtacggctcaaatgaccccaccggcttattttcattcaacggt 355
Query: 620 agctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatgg 679
||||| | ||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct: 356 gactccaggtcctcaggggcatccatatatgtggggtccacagatgatgcctccttacgg 415
Query: 680 gacaccaccaccatatgcaacaatgt 705
|||||| |||||||| |||||||||
Sbjct: 416 gacaccgccaccatacacaacaatgt 441
>gb|CD876940.1|CD876940 AZO3.111G10F011010 AZO3 Triticum aestivum cDNA clone AZO3111G10,
mRNA sequence
Length = 740
Score = 159 bits (80), Expect = 3e-037
Identities = 216/266 (81%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 176 aatgggaaagggagatgtggccactaggtccaaatcccagaaatcgtcgacagcacagaa 235
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 236 tgaacagagtacacctactaatcctcgtacagcatatcctgactggtcccagtttcaggc 295
Query: 560 atactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgt 619
||||||||||| |||| || |||| | | ||||||||||| |||||| | ||
Sbjct: 296 atactataatgtccctggtacggctcaaatgaccccaccggcttattttcattcaacggt 355
Query: 620 agctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctccttatgg 679
||||| | ||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct: 356 gactccaggtcctcaggggcatccatatatgtggggtccacagatgatgcctccttacgg 415
Query: 680 gacaccaccaccatatgcaacaatgt 705
|||||| |||||||| |||||||||
Sbjct: 416 gacaccgccaccatacacaacaatgt 441
>gb|BG607113.1|BG607113 WHE2489_E05_J09ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2489_E05_J09,
mRNA sequence
Length = 580
Score = 127 bits (64), Expect = 1e-027
Identities = 190/237 (80%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 344 aatgggaaagggagatgtggccactaggtccaaatcccanaaatcgtcgacagcacagaa 403
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 404 tgaacagagtacacctactaatcctcctacagcatatcctgactggtcccagtttcaggc 463
Query: 560 atactataatgctgctgggacagctccagtaaccccaccggcnnnnnnncattcatctgt 619
||||||||||| |||| || |||| | | ||||||||||| |||||| | ||
Sbjct: 464 atactataatgtccctggtacggctcaaatgaccccaccggcttattttcattcaacggt 523
Query: 620 agctccaacccatcaggggcacccgtatatgtggggtccacagatgatgcctcctta 676
||||| | ||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct: 524 gactccaggtcctcaggggcatccatatatgtggggtccacagatgatgccttctta 580
>gb|BJ209670.1|BJ209670 BJ209670 Y. Ogihara unpublished cDNA library, Wh Triticum aestivum
cDNA clone wh15d01 5', mRNA sequence
Length = 524
Score = 107 bits (54), Expect = 1e-021
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 440 aatgggaaagggtgatgtggctactaggtccaaatctcaaaaatcgtcagcaatacagaa 499
|||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 344 aatgggaaagggagatgtggccactaggtccaaatcccagaaatcgtcgacagcacagaa 403
Query: 500 tgagccgagtacacctgctaannnnnnnacagcatatcctgattggtctcagttccaggc 559
||| | |||||||||| |||| |||||||||||||| ||||| ||||| |||||
Sbjct: 404 tgaacagagtacacctactaatcctcgtacagcatatcctgactggtcccagtttcaggc 463
Query: 560 atactataatg 570
|||||||||||
Sbjct: 464 atactataatg 474
>gb|BE430956.1|BE430956 SUN008.H10F991221 ITEC SUN Wheat cDNA Library Triticum aestivum
cDNA clone SUN008.H10, mRNA sequence
Length = 712
Score = 103 bits (52), Expect = 2e-020
Identities = 142/173 (82%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 533 atatcctgattggtctcagttccaggcatactataatgctgctgggacagctccagtaac 592
||||||||| ||||| ||||| |||||||||||||||| | |||| || |||| | | ||
Sbjct: 1 atatcctgactggtcccagtttcaggcatactataatg-tcctggtacggctcaaatgac 59
Query: 593 cccaccggcnnnnnnncattcatctgtagctccaacccatcaggggcacccgtatatgtg 652
||||||||| |||||| | || ||||| | ||||||||| || ||||||||
Sbjct: 60 cccaccggcttattttcattcaacggtgactccaggtcctcaggggcatccatatatgtg 119
Query: 653 gggtccacagatgatgcctccttatgggacaccaccaccatatgcaacaatgt 705
|||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 120 gggtccacagatgatgcctccttacgggacaccgccaccatacacaacaatgt 172
>gb|CA608485.1|CA608485 wr1.pk0091.a5 wr1 Triticum aestivum cDNA clone wr1.pk0091.a5 5'
end, mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 678 gggacaccaccaccatatgcaacaatgt 705
||||||||||||||| | ||||||||||
Sbjct: 118 gggacaccaccaccacaagcaacaatgt 91
>gb|CA646570.1|CA646570 wre1n.pk0108.g11 wre1n Triticum aestivum cDNA clone
wre1n.pk0108.g11 5' end, mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 678 gggacaccaccaccatatgcaacaatgt 705
||||||||||||||| | ||||||||||
Sbjct: 111 gggacaccaccaccacaagcaacaatgt 84
>gb|CA652397.1|CA652397 wre1n.pk157.e5 wre1n Triticum aestivum cDNA clone wre1n.pk157.e5 5'
end, mRNA sequence
Length = 529
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 678 gggacaccaccaccatatgcaacaatgt 705
||||||||||||||| | ||||||||||
Sbjct: 118 gggacaccaccaccacaagcaacaatgt 91
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 205,291
Number of Sequences: 636343
Number of extensions: 205291
Number of successful extensions: 45655
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45630
Number of HSP's gapped (non-prelim): 18
length of query: 705
length of database: 367,240,239
effective HSP length: 19
effective length of query: 686
effective length of database: 355,149,722
effective search space: 243632709292
effective search space used: 243632709292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)