BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR741634.1|DR741634 FGAS030686 Triticum aestivum FGAS: L... 72 4e-011
gb|BG262708.1|BG262708 WHE0940_D02_H04ZS Wheat 5-15 DAP spi... 66 3e-009
gb|BQ579765.1|BQ579765 WHE2974_C06_F12ZS Wheat dormant embr... 66 3e-009
gb|DR741721.1|DR741721 FGAS030768 Triticum aestivum FGAS: L... 66 3e-009
gb|CV770641.1|CV770641 FGAS065034 Triticum aestivum FGAS: L... 58 7e-007
gb|BF473111.1|BF473111 WHE0927_G08_N15ZS Wheat 5-15 DAP spi... 52 4e-005
gb|BE443829.1|BE443829 WHE1124_A12_B24ZS Wheat etiolated se... 36 2.5
gb|BE446122.1|BE446122 WHE1141_A07_A13ZS Wheat etiolated se... 36 2.5
gb|BE446209.1|BE446209 WHE1142_A07_A14ZS Wheat etiolated se... 36 2.5
gb|BJ252606.1|BJ252606 BJ252606 Y. Ogihara unpublished cDNA... 36 2.5
gb|BQ241445.1|BQ241445 TaE05005A08R TaE05 Triticum aestivum... 36 2.5
gb|CA650323.1|CA650323 wre1n.pk0150.e8 wre1n Triticum aesti... 36 2.5
gb|CA663117.1|CA663117 wlmk1.pk0026.b11 wlmk1 Triticum aest... 36 2.5
gb|CK163120.1|CK163120 FGAS015738 Triticum aestivum FGAS: L... 36 2.5
gb|CV773897.1|CV773897 FGAS068294 Triticum aestivum FGAS: L... 36 2.5
gb|BJ211725.1|BJ211725 BJ211725 Y. Ogihara unpublished cDNA... 34 9.8
gb|BJ230780.1|BJ230780 BJ230780 Y. Ogihara unpublished cDNA... 34 9.8
gb|BJ255339.1|BJ255339 BJ255339 Y. Ogihara unpublished cDNA... 34 9.8
gb|BJ271718.1|BJ271718 BJ271718 Y. Ogihara unpublished cDNA... 34 9.8
gb|BJ276942.1|BJ276942 BJ276942 Y. Ogihara unpublished cDNA... 34 9.8
gb|BJ304991.1|BJ304991 BJ304991 Y. Ogihara unpublished cDNA... 34 9.8
gb|BQ236203.1|BQ236203 TaE05036G12F TaE05 Triticum aestivum... 34 9.8
gb|CA620356.1|CA620356 wl1n.pk0053.d4 wl1n Triticum aestivu... 34 9.8
gb|CA697981.1|CA697981 wlk4.pk0021.a9 wlk4 Triticum aestivu... 34 9.8
gb|CA731077.1|CA731077 wip1c.pk007.g15 wip1c Triticum aesti... 34 9.8
gb|CA736695.1|CA736695 wpi1s.pk008.h13 wpi1s Triticum aesti... 34 9.8
gb|CD863603.1|CD863603 AZO1.107F04F010131 AZO1 Triticum aes... 34 9.8
gb|CD886188.1|CD886188 G118.101J11R010921 G118 Triticum aes... 34 9.8
gb|CD933052.1|CD933052 GR45.119M01R010830 GR45 Triticum aes... 34 9.8
>gb|DR741634.1|DR741634 FGAS030686 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1062
Score = 71.9 bits (36), Expect = 4e-011
Identities = 111/136 (81%)
Strand = Plus / Plus
Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480
||||||||||| ||| | |||||| |||| ||||| | ||| |||| ||||| || |||
Sbjct: 530 gcaataaacaaggaggcgtggtcggaacaagaggagttgagactgattcgtgctcatcaa 589
Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaatgatgca 540
| ||||||| |||||| || |||||||||||||||| || || ||||| |||| ||||
Sbjct: 590 atctatggaactaaatggcgtgaaatggtcaaacattttcctgggaggacgaatggtgca 649
Query: 541 ctcaaagaacattgga 556
|||||||| ||||||
Sbjct: 650 atcaaagaatattgga 665
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 360 tgctatacctggccgaa 376
|||||||||||||||||
Sbjct: 469 tgctatacctggccgaa 485
>gb|BG262708.1|BG262708 WHE0940_D02_H04ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0940_D02_H04, mRNA sequence
Length = 665
Score = 65.9 bits (33), Expect = 3e-009
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480
||||||||||| ||| | |||||| |||| ||||| | ||| |||| ||||| || |||
Sbjct: 491 gcaataaacaaggaggcgtggtcggaacaagaggagttgagactgattcgtgctcatcaa 550
Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaatgatgca 540
| ||||||| |||||| || |||||||||||||||| || || ||||| |||| ||||
Sbjct: 551 atctatggaactaaatggcgtgaaatggtcaaacattttcctgggaggacgaatggtgca 610
Query: 541 ctcaaagaa 549
||||||||
Sbjct: 611 atcaaagaa 619
>gb|BQ579765.1|BQ579765 WHE2974_C06_F12ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2974_C06_F12, mRNA sequence
Length = 720
Score = 65.9 bits (33), Expect = 3e-009
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480
||||||||||| ||| | |||||| |||| ||||| | ||| |||| ||||| || |||
Sbjct: 252 gcaataaacaaggaggcgtggtcggaacaagaggagttgagactgattcgtgctcatcaa 311
Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaatgatgca 540
| ||||||| |||||| || |||||||||||||||| || || ||||| |||| ||||
Sbjct: 312 atctatggaactaaatggcgtgaaatggtcaaacattttcctgggaggacgaatggtgca 371
Query: 541 ctcaaagaa 549
||||||||
Sbjct: 372 atcaaagaa 380
Score = 36.2 bits (18), Expect = 2.5
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 327 acatgggacgaaaaactggcgaactattgcatgtgctatacctggccgaa 376
||||||| ||||||||||| ||| | ||| |||||||||||||||||
Sbjct: 158 acatgggctgaaaaactggcaaacggtcgcacatgctatacctggccgaa 207
>gb|DR741721.1|DR741721 FGAS030768 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1089
Score = 65.9 bits (33), Expect = 3e-009
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480
||||||||||| ||| | |||||| |||| ||||| | ||| |||| ||||| || |||
Sbjct: 628 gcaataaacaaggaggcgtggtcggaacaagaggagttgagactgattcgtgctcatcaa 687
Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaatgatgca 540
| ||||||| |||||| || |||||||||||||||| || || ||||| |||| ||||
Sbjct: 688 atctatggaactaaatggcgtgaaatggtcaaacattttcctgggaggacgaatggtgca 747
Query: 541 ctcaaagaa 549
||||||||
Sbjct: 748 atcaaagaa 756
Score = 36.2 bits (18), Expect = 2.5
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 327 acatgggacgaaaaactggcgaactattgcatgtgctatacctggccgaa 376
||||||| ||||||||||| ||| | ||| |||||||||||||||||
Sbjct: 534 acatgggctgaaaaactggcaaacggtcgcacatgctatacctggccgaa 583
>gb|CV770641.1|CV770641 FGAS065034 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 845
Score = 58.0 bits (29), Expect = 7e-007
Identities = 110/136 (80%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480
||||||||||| ||| | |||||| |||| ||||| | ||| |||| ||||| || |||
Sbjct: 617 gcaataaacaaggaggcgtggtcggaacaagaggagttgagactgattcgtgctcatcaa 676
Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggacaaatgatgca 540
| ||||||| | |||| || |||||||||||||||| || || ||||| |||| ||||
Sbjct: 677 atctatggaactanatggcgtgaaatggtcaaacattttcctgggaggacgaatggtgca 736
Query: 541 ctcaaagaacattgga 556
|||||||| ||||||
Sbjct: 737 -tcaaagaatattgga 751
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 360 tgctatacctggccgaa 376
|||||||||||||||||
Sbjct: 556 tgctatacctggccgaa 572
>gb|BF473111.1|BF473111 WHE0927_G08_N15ZS Wheat 5-15 DAP spike cDNA library Triticum
aestivum cDNA clone WHE0927_G08_N15, mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 421 gcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccgtgcgcagcaa 480
||||||||||| ||| | |||||| |||| ||||| | ||| |||| ||||| || |||
Sbjct: 533 gcaataaacaaggaggcgtggtcggaacaagaggagttgagactgattcgtgctcatcaa 592
Query: 481 gtttatggaaacaaatggtgtaaaatggtcaaacattt 518
| ||||||| |||||| || ||||||||||||||||
Sbjct: 593 atctatggaactaaatggcgtgaaatggtcaaacattt 630
Score = 36.2 bits (18), Expect = 2.5
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 327 acatgggacgaaaaactggcgaactattgcatgtgctatacctggccgaa 376
||||||| ||||||||||| ||| | ||| |||||||||||||||||
Sbjct: 439 acatgggctgaaaaactggcaaacggtcgcacatgctatacctggccgaa 488
>gb|BE443829.1|BE443829 WHE1124_A12_B24ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1124_A12_B24,
mRNA sequence
Length = 697
Score = 36.2 bits (18), Expect = 2.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 110 aacactcaagcaagtcagatga 131
||||||||||||| ||||||||
Sbjct: 305 aacactcaagcaaatcagatga 284
>gb|BE446122.1|BE446122 WHE1141_A07_A13ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1141_A07_A13,
mRNA sequence
Length = 445
Score = 36.2 bits (18), Expect = 2.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 110 aacactcaagcaagtcagatga 131
||||||||||||| ||||||||
Sbjct: 306 aacactcaagcaaatcagatga 285
>gb|BE446209.1|BE446209 WHE1142_A07_A14ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1142_A07_A14,
mRNA sequence
Length = 335
Score = 36.2 bits (18), Expect = 2.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 110 aacactcaagcaagtcagatga 131
||||||||||||| ||||||||
Sbjct: 202 aacactcaagcaaatcagatga 181
>gb|BJ252606.1|BJ252606 BJ252606 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf25b24 3', mRNA sequence
Length = 655
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 126 agatgaggttgctgaaga 143
||||||||||||||||||
Sbjct: 194 agatgaggttgctgaaga 211
>gb|BQ241445.1|BQ241445 TaE05005A08R TaE05 Triticum aestivum cDNA clone TaE05005A08R, mRNA
sequence
Length = 603
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 537 tgcactcaaagaacattg 554
||||||||||||||||||
Sbjct: 476 tgcactcaaagaacattg 493
>gb|CA650323.1|CA650323 wre1n.pk0150.e8 wre1n Triticum aestivum cDNA clone wre1n.pk0150.e8
5' end, mRNA sequence
Length = 297
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 309 aaagcaaatggtaaaaag 326
||||||||||||||||||
Sbjct: 214 aaagcaaatggtaaaaag 231
>gb|CA663117.1|CA663117 wlmk1.pk0026.b11 wlmk1 Triticum aestivum cDNA clone
wlmk1.pk0026.b11 5' end, mRNA sequence
Length = 361
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 126 agatgaggttgctgaaga 143
||||||||||||||||||
Sbjct: 122 agatgaggttgctgaaga 105
>gb|CK163120.1|CK163120 FGAS015738 Triticum aestivum FGAS: Library 4 Gate 8 Triticum
aestivum cDNA, mRNA sequence
Length = 1065
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 537 tgcactcaaagaacattg 554
||||||||||||||||||
Sbjct: 655 tgcactcaaagaacattg 672
>gb|CV773897.1|CV773897 FGAS068294 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 817
Score = 36.2 bits (18), Expect = 2.5
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 327 acatgggacgaaaaactggcgaactattgcatgtgctatacctggccgaa 376
||||||| ||||||||||| ||| | ||| |||||||||||||||||
Sbjct: 623 acatgggctgaaaaactggcaaacggtcgcaaatgctatacctggccgaa 672
>gb|BJ211725.1|BJ211725 BJ211725 Y. Ogihara unpublished cDNA library, Wh Triticum
aestivum cDNA clone wh32n10 5', mRNA sequence
Length = 530
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16 tgtggtggaatcggagc 32
|||||||||||||||||
Sbjct: 28 tgtggtggaatcggagc 12
>gb|BJ230780.1|BJ230780 BJ230780 Y. Ogihara unpublished cDNA library, Wh_dL Triticum
aestivum cDNA clone whdl24d15 3', mRNA sequence
Length = 482
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 289 tcagaggaagatgaggc 305
|||||||||||||||||
Sbjct: 196 tcagaggaagatgaggc 180
>gb|BJ255339.1|BJ255339 BJ255339 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf23f12 3', mRNA sequence
Length = 479
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16 tgtggtggaatcggagc 32
|||||||||||||||||
Sbjct: 463 tgtggtggaatcggagc 479
>gb|BJ271718.1|BJ271718 BJ271718 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh27d15 5', mRNA sequence
Length = 540
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 289 tcagaggaagatgaggc 305
|||||||||||||||||
Sbjct: 445 tcagaggaagatgaggc 461
>gb|BJ276942.1|BJ276942 BJ276942 Y. Ogihara unpublished cDNA library, Wh_oh Triticum
aestivum cDNA clone whoh27d15 3', mRNA sequence
Length = 614
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 289 tcagaggaagatgaggc 305
|||||||||||||||||
Sbjct: 212 tcagaggaagatgaggc 196
>gb|BJ304991.1|BJ304991 BJ304991 Y. Ogihara unpublished cDNA library, Wh_yd Triticum
aestivum cDNA clone whyd28d04 5', mRNA sequence
Length = 535
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 57 gcagagtagtgatgggt 73
|||||||||||||||||
Sbjct: 353 gcagagtagtgatgggt 369
>gb|BQ236203.1|BQ236203 TaE05036G12F TaE05 Triticum aestivum cDNA clone TaE05036G12F, mRNA
sequence
Length = 569
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 306 actaaagcaaatggtaa 322
|||||||||||||||||
Sbjct: 184 actaaagcaaatggtaa 200
>gb|CA620356.1|CA620356 wl1n.pk0053.d4 wl1n Triticum aestivum cDNA clone wl1n.pk0053.d4 5'
end, mRNA sequence
Length = 637
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 478 caagtttatggaaacaa 494
|||||||||||||||||
Sbjct: 238 caagtttatggaaacaa 254
>gb|CA697981.1|CA697981 wlk4.pk0021.a9 wlk4 Triticum aestivum cDNA clone wlk4.pk0021.a9 5'
end, mRNA sequence
Length = 561
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 487 ggaaacaaatggtgtaa 503
|||||||||||||||||
Sbjct: 522 ggaaacaaatggtgtaa 538
>gb|CA731077.1|CA731077 wip1c.pk007.g15 wip1c Triticum aestivum cDNA clone
wip1c.pk007.g15 5' end, mRNA sequence
Length = 608
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11 aagcttgtggtggaatc 27
|||||||||||||||||
Sbjct: 70 aagcttgtggtggaatc 86
>gb|CA736695.1|CA736695 wpi1s.pk008.h13 wpi1s Triticum aestivum cDNA clone wpi1s.pk008.h13
5' end, mRNA sequence
Length = 460
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 207 gatagagggacctcctc 223
|||||||||||||||||
Sbjct: 115 gatagagggacctcctc 99
>gb|CD863603.1|CD863603 AZO1.107F04F010131 AZO1 Triticum aestivum cDNA clone AZO1107F04,
mRNA sequence
Length = 255
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 226 aagaaaattgtccagaa 242
|||||||||||||||||
Sbjct: 19 aagaaaattgtccagaa 35
>gb|CD886188.1|CD886188 G118.101J11R010921 G118 Triticum aestivum cDNA clone G118101J11,
mRNA sequence
Length = 518
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 103 tcaacaaaacactcaag 119
|||||||||||||||||
Sbjct: 28 tcaacaaaacactcaag 44
>gb|CD933052.1|CD933052 GR45.119M01R010830 GR45 Triticum aestivum cDNA clone GR45119M01,
mRNA sequence
Length = 664
Score = 34.2 bits (17), Expect = 9.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11 aagcttgtggtggaatc 27
|||||||||||||||||
Sbjct: 376 aagcttgtggtggaatc 360
Database: Triticum_nucl_with_EST.fasta
Posted date: May 2, 2006 3:43 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 90,811
Number of Sequences: 636343
Number of extensions: 90811
Number of successful extensions: 24501
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24458
Number of HSP's gapped (non-prelim): 43
length of query: 559
length of database: 367,240,239
effective HSP length: 19
effective length of query: 540
effective length of database: 355,149,722
effective search space: 191780849880
effective search space used: 191780849880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)