BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063F13F020916.3.1
(668 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG606613.1|BG606613 WHE2958_G07_N14ZS Wheat dormant embr... 76 3e-012
gb|CD879306.1|CD879306 AZO4.104N23F010929 AZO4 Triticum aes... 60 2e-007
gb|DR734125.1|DR734125 FGAS079881 Triticum aestivum FGAS: L... 60 2e-007
gb|CD876596.1|CD876596 AZO3.110E16F011010 AZO3 Triticum aes... 50 2e-004
gb|CA723669.1|CA723669 wdr1f.pk003.f23 wdr1f Triticum aesti... 40 0.19
gb|CV779527.1|CV779527 FGAS073936 Triticum aestivum FGAS: L... 40 0.19
gb|DQ013358.1| Triticum aestivum wall-associated kinase 4 (... 40 0.19
>gb|BG606613.1|BG606613 WHE2958_G07_N14ZS Wheat dormant embryo cDNA library Triticum
aestivum cDNA clone WHE2958_G07_N14, mRNA sequence
Length = 627
Score = 75.8 bits (38), Expect = 3e-012
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 145 gacactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||||||| || ||||| ||||||||||||||| | |||||||| ||||| ||||||||
Sbjct: 347 gacactcccgggctgcccggacaagtgcggcaacgtgagcatcccataccccttcggcac 406
Query: 205 caaggagggatgcttcaaacccgacttcgaggtcctctgcaacgacagcttccatccgcc 264
| |||| || |||||| || | |||| | || |||||||| ||| ||||||||| ||
Sbjct: 407 ccaggatggctgcttcctcccaggcttccaaatcatctgcaaccacaccttccatccacc 466
Query: 265 tcgcgccttc 274
|||||||||
Sbjct: 467 ccgcgccttc 476
>gb|CD879306.1|CD879306 AZO4.104N23F010929 AZO4 Triticum aestivum cDNA clone AZO4104N23,
mRNA sequence
Length = 551
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| |||||||||| ||| |||||||
Sbjct: 164 tgccccgacatgtgcggcaacatcagcatccccttcccattcggca 209
>gb|DR734125.1|DR734125 FGAS079881 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 867
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| |||||||||||||| |||||||| |||||||| |||||||
Sbjct: 180 tgccctgacaagtgcggcaatataagcattccctacccattcggca 225
>gb|CD876596.1|CD876596 AZO3.110E16F011010 AZO3 Triticum aestivum cDNA clone AZO3110E16,
mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggc 202
||||| ||||||||||||||||| |||||||| | ||| ||||||
Sbjct: 166 tgccctgacaagtgcggcaacatgagcatcccgttccccttcggc 210
>gb|CA723669.1|CA723669 wdr1f.pk003.f23 wdr1f Triticum aestivum cDNA clone wdr1f.pk003.f23
5' end, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.19
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 164 gacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||||| |||| |||||||| | ||| |||||||
Sbjct: 149 gacaagtgcggcgacatgagcatcccgttccccttcggca 188
>gb|CV779527.1|CV779527 FGAS073936 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 825
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatccc 189
||||| ||||||||||||||| | ||||||||
Sbjct: 250 tgccctgacaagtgcggcaacctgagcatccc 281
>gb|DQ013358.1| Triticum aestivum wall-associated kinase 4 (WAK4) mRNA, complete
cds
Length = 2308
Score = 40.1 bits (20), Expect = 0.19
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 164 gacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||||| |||| |||||||| | ||| |||||||
Sbjct: 187 gacaagtgcggcgacatgagcatcccgttccccttcggca 226
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 218,352
Number of Sequences: 636343
Number of extensions: 218352
Number of successful extensions: 77023
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77013
Number of HSP's gapped (non-prelim): 10
length of query: 668
length of database: 367,240,239
effective HSP length: 19
effective length of query: 649
effective length of database: 355,149,722
effective search space: 230492169578
effective search space used: 230492169578
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)