BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006E19F020311.3.1
(789 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ888641.1|AJ888641 AJ888641 Triticum aestivum cv. Fidel... 100 3e-019
gb|CD932169.1|CD932169 GR45.117B15F010717 GR45 Triticum aes... 54 2e-005
>gb|AJ888641.1|AJ888641 AJ888641 Triticum aestivum cv. Fidel leaf Triticum aestivum cDNA
clone OA_a3D11, mRNA sequence
Length = 521
Score = 99.6 bits (50), Expect = 3e-019
Identities = 131/158 (82%)
Strand = Plus / Minus
Query: 488 acatatctggtgtatgagaagcagcagaagctaaggattatgatgaaaatgcacggtctg 547
|||||||| ||||||||||| || || ||||| | ||||||||||| ||||| ||| ||
Sbjct: 515 acatatctcgtgtatgagaaacaacaaaagctgaaaattatgatgaagatgcatggtttg 456
Query: 548 aaggatgggccttactggctgatatcttattcttatttccttgctctatcaatcgtctat 607
||||| || ||||||||| ||||| |||| |||| ||| ||||||||||| ||||||
Sbjct: 455 aaggacggcccttactggatgataacttacacttacttctttgctctatcagctgtctat 396
Query: 608 atgttattctttatgatttttggctccttgattggtct 645
||| || | ||||| |||||||||||| |||| |||||
Sbjct: 395 atgctactatttatcatttttggctccgtgataggtct 358
Score = 42.1 bits (21), Expect = 0.057
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 701 ataaatttgcagattgcacttgcattttt 729
|||||| ||||||||||||| ||||||||
Sbjct: 302 ataaatctgcagattgcactcgcattttt 274
>gb|CD932169.1|CD932169 GR45.117B15F010717 GR45 Triticum aestivum cDNA clone GR45117B15,
mRNA sequence
Length = 364
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 500 tatgagaagcagcagaagctaaggattatgatgaaaatgcacggtct 546
||||||||||| ||||||| |||||||||||||| ||||| |||||
Sbjct: 333 tatgagaagcaaaagaagcttaggattatgatgaagatgcatggtct 287
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,078
Number of Sequences: 636343
Number of extensions: 134078
Number of successful extensions: 34062
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34059
Number of HSP's gapped (non-prelim): 3
length of query: 789
length of database: 367,240,239
effective HSP length: 19
effective length of query: 770
effective length of database: 355,149,722
effective search space: 273465285940
effective search space used: 273465285940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)