BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS5e09.xg.2.1
(723 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ837969.1|BQ837969 WHE2905_A11_A21ZS Wheat aluminum-str... 58 9e-007
gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed r... 46 0.003
gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stresse... 46 0.003
gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aesti... 46 0.003
gb|CA721277.1|CA721277 wdk9n.pk001.e20 wdk9n Triticum aesti... 46 0.003
gb|CD453688.1|CD453688 WHE0840_E04_J08ZT CS wheat vernalize... 46 0.003
gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aes... 46 0.003
gb|AL822298.1|AL822298 AL822298 p:234 Triticum aestivum cDN... 44 0.013
gb|AJ602345.1|AJ602345 AJ602345 T05 Triticum aestivum cDNA ... 44 0.013
gb|BE415485.1|BE415485 MWL031.D01000324 ITEC MWL Wheat Root... 42 0.052
gb|AJ614016.1|AJ614016 AJ614016 Triticum turgidum subsp. du... 42 0.052
gb|BE496865.1|BE496865 WHE0761_D01_H01ZS Wheat heat-stresse... 40 0.21
gb|CA741400.1|CA741400 wia1c.pk002.l7 wia1c Triticum aestiv... 40 0.21
gb|CD454260.1|CD454260 WHE1770_D02_H04ZT CS wheat pre-anthe... 40 0.21
gb|CD876493.1|CD876493 AZO3.109P24R011127 AZO3 Triticum aes... 40 0.21
gb|CK216261.1|CK216261 FGAS028248 Triticum aestivum FGAS: L... 40 0.21
>gb|BQ837969.1|BQ837969 WHE2905_A11_A21ZS Wheat aluminum-stressed root tip cDNA library
Triticum aestivum cDNA clone WHE2905_A11_A21, mRNA
sequence
Length = 798
Score = 58.0 bits (29), Expect = 9e-007
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 228 ctgcatggagtggctagacgcacgggcccctggatccgtgctgtacgtgagcttcgg 284
|||||| |||||||| ||||| | |||| | || |||||||||||||||||||||||
Sbjct: 194 ctgcatcgagtggctggacgcgcaggccgcggggtccgtgctgtacgtgagcttcgg 250
Score = 50.1 bits (25), Expect = 2e-004
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 432 ggagggcaggggcaagg-tgatcgagtgggcgccgcagcaggaggtgct 479
||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 404 ggagggcaggggcaagggtggtgaggtgggcgccgcagcaggaggtgct 452
>gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed root cDNA library Triticum
aestivum cDNA clone WHE3515_A05_B09, mRNA sequence
Length = 545
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||| |||||||||| || ||||||||
Sbjct: 383 tgggcgccgcaggaggaggtgctggcgcacccggc 417
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 cgtgctgtacgtgagcttcgg 284
|||||||||||||||||||||
Sbjct: 190 cgtgctgtacgtgagcttcgg 210
>gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4120_D01_H02, mRNA sequence
Length = 754
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||| |||||||||| || ||||||||
Sbjct: 379 tgggcgccgcaggaggaggtgctggcgcacccggc 413
>gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aestivum cDNA clone wkm1c.pk005.e20
5' end, mRNA sequence
Length = 504
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||| |||||||||| || ||||||||
Sbjct: 320 tgggcgccgcaggaggaggtgctggcgcacccggc 354
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 cgtgctgtacgtgagcttcgg 284
|||||||||||||||||||||
Sbjct: 127 cgtgctgtacgtgagcttcgg 147
>gb|CA721277.1|CA721277 wdk9n.pk001.e20 wdk9n Triticum aestivum cDNA clone wdk9n.pk001.e20
5' end, mRNA sequence
Length = 516
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||| |||||||||| || ||||||||
Sbjct: 487 tgggcgccgcaggaggaggtgctggcgcacccggc 453
>gb|CD453688.1|CD453688 WHE0840_E04_J08ZT CS wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0840_E04_J08, mRNA sequence
Length = 537
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||| |||||||||| || ||||||||
Sbjct: 487 tgggcgccgcaggaggaggtgctggcgcacccggc 453
>gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aestivum cDNA clone G550125P10,
mRNA sequence
Length = 463
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
|||||||||||| |||||||||| || ||||||||
Sbjct: 89 tgggcgccgcaggaggaggtgctggcgcacccggc 123
>gb|AL822298.1|AL822298 AL822298 p:234 Triticum aestivum cDNA clone D05_p234_plate_22, mRNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||| |||||||||||||||||||
Sbjct: 256 tccgtggtgtacgtgagcttcggcag 281
>gb|AJ602345.1|AJ602345 AJ602345 T05 Triticum aestivum cDNA clone H03_T05_plate_5, mRNA
sequence
Length = 365
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 262 tccgtgctgtacgtgagcttcggcag 287
|||||||||||||| |||||||||||
Sbjct: 243 tccgtgctgtacgtcagcttcggcag 268
>gb|BE415485.1|BE415485 MWL031.D01000324 ITEC MWL Wheat Root Library Triticum aestivum cDNA
clone MWL031.D01, mRNA sequence
Length = 319
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 cgtgctgtacgtgagcttcgg 284
|||||||||||||||||||||
Sbjct: 147 cgtgctgtacgtgagcttcgg 167
>gb|AJ614016.1|AJ614016 AJ614016 Triticum turgidum subsp. durum etiolated seedling 20 day
Triticum turgidum subsp. durum cDNA clone 09638R, mRNA
sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 264 cgtgctgtacgtgagcttcgg 284
|||||||||||||||||||||
Sbjct: 233 cgtgctgtacgtgagcttcgg 253
>gb|BE496865.1|BE496865 WHE0761_D01_H01ZS Wheat heat-stressed seedling cDNA library
Triticum aestivum cDNA clone WHE0761_D01_H01, mRNA
sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.21
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 516 cggatggaactcnacgctggaga 538
|||||||||||| ||||||||||
Sbjct: 169 cggatggaactccacgctggaga 191
>gb|CA741400.1|CA741400 wia1c.pk002.l7 wia1c Triticum aestivum cDNA clone wia1c.pk002.l7 5'
end, mRNA sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.21
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 516 cggatggaactcnacgctggaga 538
|||||||||||| ||||||||||
Sbjct: 8 cggatggaactccacgctggaga 30
>gb|CD454260.1|CD454260 WHE1770_D02_H04ZT CS wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1770_D02_H04, mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.21
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 516 cggatggaactcnacgctggaga 538
|||||||||||| ||||||||||
Sbjct: 496 cggatggaactccacgctggaga 474
>gb|CD876493.1|CD876493 AZO3.109P24R011127 AZO3 Triticum aestivum cDNA clone AZO3109P24,
mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 317 tggagatcgcgtggggcttggcgaacagcggc 348
||||| |||||||||| ||||||||||||||
Sbjct: 623 tggagttcgcgtgggggctggcgaacagcggc 592
>gb|CK216261.1|CK216261 FGAS028248 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
aestivum cDNA, mRNA sequence
Length = 1093
Score = 40.1 bits (20), Expect = 0.21
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 260 gatccgtgctgtacgtgagcttcggcag 287
|||||||||| ||||| |||||||||||
Sbjct: 714 gatccgtgctttacgtcagcttcggcag 687
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,320
Number of Sequences: 636343
Number of extensions: 139320
Number of successful extensions: 37450
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37423
Number of HSP's gapped (non-prelim): 26
length of query: 723
length of database: 367,240,239
effective HSP length: 19
effective length of query: 704
effective length of database: 355,149,722
effective search space: 250025404288
effective search space used: 250025404288
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)