BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBS5e09.xg.2.1
         (723 letters)

Database: Triticum_nucl_with_EST.fasta 
           636,343 sequences; 367,240,239 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ837969.1|BQ837969  WHE2905_A11_A21ZS Wheat aluminum-str...    58   9e-007
gb|BQ483975.1|BQ483975  WHE3515_A05_B09ZS Wheat unstressed r...    46   0.003
gb|BQ752889.1|BQ752889  WHE4120_D01_H02ZS Wheat salt-stresse...    46   0.003
gb|CA700350.1|CA700350  wkm1c.pk005.e20 wkm1c Triticum aesti...    46   0.003
gb|CA721277.1|CA721277  wdk9n.pk001.e20 wdk9n Triticum aesti...    46   0.003
gb|CD453688.1|CD453688  WHE0840_E04_J08ZT CS wheat vernalize...    46   0.003
gb|CD915387.1|CD915387  G550.125P10F010713 G550 Triticum aes...    46   0.003
gb|AL822298.1|AL822298  AL822298 p:234 Triticum aestivum cDN...    44   0.013
gb|AJ602345.1|AJ602345  AJ602345 T05 Triticum aestivum cDNA ...    44   0.013
gb|BE415485.1|BE415485  MWL031.D01000324 ITEC MWL Wheat Root...    42   0.052
gb|AJ614016.1|AJ614016  AJ614016 Triticum turgidum subsp. du...    42   0.052
gb|BE496865.1|BE496865  WHE0761_D01_H01ZS Wheat heat-stresse...    40   0.21 
gb|CA741400.1|CA741400  wia1c.pk002.l7 wia1c Triticum aestiv...    40   0.21 
gb|CD454260.1|CD454260  WHE1770_D02_H04ZT CS wheat pre-anthe...    40   0.21 
gb|CD876493.1|CD876493  AZO3.109P24R011127 AZO3 Triticum aes...    40   0.21 
gb|CK216261.1|CK216261  FGAS028248 Triticum aestivum FGAS: L...    40   0.21 
>gb|BQ837969.1|BQ837969 WHE2905_A11_A21ZS Wheat aluminum-stressed root tip cDNA library
           Triticum aestivum cDNA clone WHE2905_A11_A21, mRNA
           sequence
          Length = 798

 Score = 58.0 bits (29), Expect = 9e-007
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 228 ctgcatggagtggctagacgcacgggcccctggatccgtgctgtacgtgagcttcgg 284
           |||||| |||||||| ||||| | |||| | || |||||||||||||||||||||||
Sbjct: 194 ctgcatcgagtggctggacgcgcaggccgcggggtccgtgctgtacgtgagcttcgg 250

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                            
Query: 432 ggagggcaggggcaagg-tgatcgagtgggcgccgcagcaggaggtgct 479
           ||||||||||||||||| || |   ||||||||||||||||||||||||
Sbjct: 404 ggagggcaggggcaagggtggtgaggtgggcgccgcagcaggaggtgct 452
>gb|BQ483975.1|BQ483975 WHE3515_A05_B09ZS Wheat unstressed root cDNA library Triticum
           aestivum cDNA clone WHE3515_A05_B09, mRNA sequence
          Length = 545

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
           |||||||||||| |||||||||| || ||||||||
Sbjct: 383 tgggcgccgcaggaggaggtgctggcgcacccggc 417

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cgtgctgtacgtgagcttcgg 284
           |||||||||||||||||||||
Sbjct: 190 cgtgctgtacgtgagcttcgg 210
>gb|BQ752889.1|BQ752889 WHE4120_D01_H02ZS Wheat salt-stressed root cDNA library Triticum
           aestivum cDNA clone WHE4120_D01_H02, mRNA sequence
          Length = 754

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
           |||||||||||| |||||||||| || ||||||||
Sbjct: 379 tgggcgccgcaggaggaggtgctggcgcacccggc 413
>gb|CA700350.1|CA700350 wkm1c.pk005.e20 wkm1c Triticum aestivum cDNA clone wkm1c.pk005.e20
           5' end, mRNA sequence
          Length = 504

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
           |||||||||||| |||||||||| || ||||||||
Sbjct: 320 tgggcgccgcaggaggaggtgctggcgcacccggc 354

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cgtgctgtacgtgagcttcgg 284
           |||||||||||||||||||||
Sbjct: 127 cgtgctgtacgtgagcttcgg 147
>gb|CA721277.1|CA721277 wdk9n.pk001.e20 wdk9n Triticum aestivum cDNA clone wdk9n.pk001.e20
           5' end, mRNA sequence
          Length = 516

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
           |||||||||||| |||||||||| || ||||||||
Sbjct: 487 tgggcgccgcaggaggaggtgctggcgcacccggc 453
>gb|CD453688.1|CD453688 WHE0840_E04_J08ZT CS wheat vernalized crown cDNA library Triticum
           aestivum cDNA clone WHE0840_E04_J08, mRNA sequence
          Length = 537

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
           |||||||||||| |||||||||| || ||||||||
Sbjct: 487 tgggcgccgcaggaggaggtgctggcgcacccggc 453
>gb|CD915387.1|CD915387 G550.125P10F010713 G550 Triticum aestivum cDNA clone G550125P10,
           mRNA sequence
          Length = 463

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 457 tgggcgccgcagcaggaggtgctagctcacccggc 491
           |||||||||||| |||||||||| || ||||||||
Sbjct: 89  tgggcgccgcaggaggaggtgctggcgcacccggc 123
>gb|AL822298.1|AL822298 AL822298 p:234 Triticum aestivum cDNA clone D05_p234_plate_22, mRNA
           sequence
          Length = 628

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 262 tccgtgctgtacgtgagcttcggcag 287
           |||||| |||||||||||||||||||
Sbjct: 256 tccgtggtgtacgtgagcttcggcag 281
>gb|AJ602345.1|AJ602345 AJ602345 T05 Triticum aestivum cDNA clone H03_T05_plate_5, mRNA
           sequence
          Length = 365

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 262 tccgtgctgtacgtgagcttcggcag 287
           |||||||||||||| |||||||||||
Sbjct: 243 tccgtgctgtacgtcagcttcggcag 268
>gb|BE415485.1|BE415485 MWL031.D01000324 ITEC MWL Wheat Root Library Triticum aestivum cDNA
           clone MWL031.D01, mRNA sequence
          Length = 319

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cgtgctgtacgtgagcttcgg 284
           |||||||||||||||||||||
Sbjct: 147 cgtgctgtacgtgagcttcgg 167
>gb|AJ614016.1|AJ614016 AJ614016 Triticum turgidum subsp. durum etiolated seedling 20 day
           Triticum turgidum subsp. durum cDNA clone 09638R, mRNA
           sequence
          Length = 390

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cgtgctgtacgtgagcttcgg 284
           |||||||||||||||||||||
Sbjct: 233 cgtgctgtacgtgagcttcgg 253
>gb|BE496865.1|BE496865 WHE0761_D01_H01ZS Wheat heat-stressed seedling cDNA library
           Triticum aestivum cDNA clone WHE0761_D01_H01, mRNA
           sequence
          Length = 614

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 516 cggatggaactcnacgctggaga 538
           |||||||||||| ||||||||||
Sbjct: 169 cggatggaactccacgctggaga 191
>gb|CA741400.1|CA741400 wia1c.pk002.l7 wia1c Triticum aestivum cDNA clone wia1c.pk002.l7 5'
           end, mRNA sequence
          Length = 498

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 516 cggatggaactcnacgctggaga 538
           |||||||||||| ||||||||||
Sbjct: 8   cggatggaactccacgctggaga 30
>gb|CD454260.1|CD454260 WHE1770_D02_H04ZT CS wheat pre-anthesis spike cDNA library Triticum
           aestivum cDNA clone WHE1770_D02_H04, mRNA sequence
          Length = 592

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 516 cggatggaactcnacgctggaga 538
           |||||||||||| ||||||||||
Sbjct: 496 cggatggaactccacgctggaga 474
>gb|CD876493.1|CD876493 AZO3.109P24R011127 AZO3 Triticum aestivum cDNA clone AZO3109P24,
           mRNA sequence
          Length = 666

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 317 tggagatcgcgtggggcttggcgaacagcggc 348
           ||||| ||||||||||  ||||||||||||||
Sbjct: 623 tggagttcgcgtgggggctggcgaacagcggc 592
>gb|CK216261.1|CK216261 FGAS028248 Triticum aestivum FGAS: Library 6 CAP GATE 1 Triticum
           aestivum cDNA, mRNA sequence
          Length = 1093

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 260 gatccgtgctgtacgtgagcttcggcag 287
           |||||||||| ||||| |||||||||||
Sbjct: 714 gatccgtgctttacgtcagcttcggcag 687
  Database: Triticum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  3:01 PM
  Number of letters in database: 367,240,239
  Number of sequences in database:  636,343
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,320
Number of Sequences: 636343
Number of extensions: 139320
Number of successful extensions: 37450
Number of sequences better than  0.5: 16
Number of HSP's better than  0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37423
Number of HSP's gapped (non-prelim): 26
length of query: 723
length of database: 367,240,239
effective HSP length: 19
effective length of query: 704
effective length of database: 355,149,722
effective search space: 250025404288
effective search space used: 250025404288
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)