BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL3a04.xg.2.1
(369 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA618261.1|CA618261 wl1n.pk0031.e9 wl1n Triticum aestivu... 315 1e-084
gb|CA605590.1|CA605590 wr1.pk0055.h7 wr1 Triticum aestivum ... 42 0.026
gb|BQ743225.1|BQ743225 WHE4101_E11_I21ZS Wheat salt-stresse... 40 0.10
gb|CA659240.1|CA659240 wlm1.pk0001.c11 wlm1 Triticum aestiv... 40 0.10
gb|CD867159.1|CD867159 AZO2.105I06F001123 AZO2 Triticum aes... 40 0.10
gb|CD872783.1|CD872783 AZO2.121I12R010405 AZO2 Triticum aes... 40 0.10
gb|CD889117.1|CD889117 G118.111A06F010720 G118 Triticum aes... 40 0.10
gb|CF134208.1|CF134208 WHE4369_B08_D15ZT Wheat meiotic flor... 40 0.10
gb|AL811207.1|AL811207 AL811207 d:37 Triticum aestivum cDNA... 40 0.10
gb|DR741182.1|DR741182 FGAS001114 Triticum aestivum FGAS: L... 40 0.10
gb|BQ295351.1|BQ295351 WHE2869_A07_B13ZS Wheat unstressed r... 38 0.41
>gb|CA618261.1|CA618261 wl1n.pk0031.e9 wl1n Triticum aestivum cDNA clone wl1n.pk0031.e9 5'
end, mRNA sequence
Length = 534
Score = 315 bits (159), Expect = 1e-084
Identities = 229/245 (93%), Gaps = 10/245 (4%)
Strand = Plus / Plus
Query: 4 gaagaccaggagcaatttcagttccgtgttcacgtactgtgattatatatacgggacaaa 63
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 251 gaagaccaggagcaatttcagttccgtgttcacgttctgtgattatatatatgggacaaa 310
Query: 64 caaaggctacatgtaccacaagagaagcctagccgagctgaagnnnaaggaggccgaaca 123
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 311 caaaggctacatgtaccacaagagaagccta-ccgagctgaagacgaaggaggccgaaca 369
Query: 124 cagcgggaaagaagactgagataacgtactctcaacattttatgcacgaataagttggat 183
|||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct: 370 cagcgggaaagaagactgagattac-tactctcaacattttatgcacgaataa-ttggat 427
Query: 184 actgcata----aagcgtccatcatatacagtagttgctcgctccgttctgttccgttgc 239
|||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 428 actgcataaattaagcgtccatcatataca-ta-ttgctcgctccgttctgtt-cgttgc 484
Query: 240 ctaga 244
|||||
Sbjct: 485 ctaga 489
>gb|CA605590.1|CA605590 wr1.pk0055.h7 wr1 Triticum aestivum cDNA clone wr1.pk0055.h7 5'
end, mRNA sequence
Length = 595
Score = 42.1 bits (21), Expect = 0.026
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 24 gttccgtgttcacgtactgtgatta 48
||||||| |||||||||||||||||
Sbjct: 431 gttccgttttcacgtactgtgatta 407
>gb|BQ743225.1|BQ743225 WHE4101_E11_I21ZS Wheat salt-stressed root cDNA library Triticum
aestivum cDNA clone WHE4101_E11_I21, mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 495 ttccgttttcacgtactgtgatta 518
>gb|CA659240.1|CA659240 wlm1.pk0001.c11 wlm1 Triticum aestivum cDNA clone wlm1.pk0001.c11
5' end, mRNA sequence
Length = 245
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 25 ttccgttttcacgtactgtgatta 48
>gb|CD867159.1|CD867159 AZO2.105I06F001123 AZO2 Triticum aestivum cDNA clone AZO2105I06,
mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 149 ttccgttttcacgtactgtgatta 172
>gb|CD872783.1|CD872783 AZO2.121I12R010405 AZO2 Triticum aestivum cDNA clone AZO2121I12,
mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 333 ttccgttttcacgtactgtgatta 310
>gb|CD889117.1|CD889117 G118.111A06F010720 G118 Triticum aestivum cDNA clone G118111A06,
mRNA sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 29 ttccgttttcacgtactgtgatta 52
>gb|CF134208.1|CF134208 WHE4369_B08_D15ZT Wheat meiotic floret cDNA library Triticum
aestivum cDNA clone WHE4369_B08_D15, mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 649 ttccgttttcacgtactgtgatta 672
>gb|AL811207.1|AL811207 AL811207 d:37 Triticum aestivum cDNA clone D10_d37_plate_2_run_2,
mRNA sequence
Length = 517
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 208 ttccgttttcacgtactgtgatta 231
>gb|DR741182.1|DR741182 FGAS001114 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 1091
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ttccgtgttcacgtactgtgatta 48
|||||| |||||||||||||||||
Sbjct: 789 ttccgttttcacgtactgtgatta 812
>gb|BQ295351.1|BQ295351 WHE2869_A07_B13ZS Wheat unstressed root tip cDNA library Triticum
aestivum cDNA clone WHE2869_A07_B13, mRNA sequence
Length = 722
Score = 38.2 bits (19), Expect = 0.41
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 29 gtgttcacgtactgtgattatatatacgggacaaa 63
||||||||||| || |||||| | |||||||||||
Sbjct: 336 gtgttcacgtattgcgattatctgtacgggacaaa 370
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,709
Number of Sequences: 636343
Number of extensions: 43709
Number of successful extensions: 11319
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11303
Number of HSP's gapped (non-prelim): 11
length of query: 369
length of database: 367,240,239
effective HSP length: 19
effective length of query: 350
effective length of database: 355,149,722
effective search space: 124302402700
effective search space used: 124302402700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)