BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE500722.1|BE500722 WHE0991-0994_G03_G03ZS Wheat pre-ant... 84 8e-015
gb|BQ902219.1|BQ902219 Ta02_06b04_R Ta02_AAFC_ECORC_Fusariu... 84 8e-015
gb|BJ245498.1|BJ245498 BJ245498 Y. Ogihara unpublished cDNA... 82 3e-014
gb|BJ251381.1|BJ251381 BJ251381 Y. Ogihara unpublished cDNA... 82 3e-014
gb|BG263743.1|BG263743 WHE2348_E03_J06ZS Wheat pre-anthesis... 74 8e-012
gb|BJ247645.1|BJ247645 BJ247645 Y. Ogihara unpublished cDNA... 74 8e-012
gb|BJ253477.1|BJ253477 BJ253477 Y. Ogihara unpublished cDNA... 74 8e-012
gb|BJ253745.1|BJ253745 BJ253745 Y. Ogihara unpublished cDNA... 74 8e-012
gb|BQ901426.1|BQ901426 Ta02_19d11_R Ta02_AAFC_ECORC_Fusariu... 64 8e-009
gb|BE500862.1|BE500862 WHE0991-0994_L10_L10ZS Wheat pre-ant... 60 1e-007
gb|CD454196.1|CD454196 WHE0991-0994_L10_L10ZT CS wheat pre-... 54 7e-006
gb|BJ243839.1|BJ243839 BJ243839 Y. Ogihara unpublished cDNA... 52 3e-005
gb|BJ247418.1|BJ247418 BJ247418 Y. Ogihara unpublished cDNA... 52 3e-005
gb|BJ248972.1|BJ248972 BJ248972 Y. Ogihara unpublished cDNA... 52 3e-005
gb|BJ258356.1|BJ258356 BJ258356 Y. Ogihara unpublished cDNA... 52 3e-005
gb|CA593420.1|CA593420 wpa1c.pk003.j13 wpa1c Triticum aesti... 52 3e-005
gb|CA741431.1|CA741431 wia1c.pk002.f17 wia1c Triticum aesti... 52 3e-005
gb|BJ263949.1|BJ263949 BJ263949 Y. Ogihara unpublished cDNA... 48 4e-004
gb|BJ285828.1|BJ285828 BJ285828 Y. Ogihara unpublished cDNA... 48 4e-004
gb|BI750799.1|BI750799 Ta01_02d02_R Ta01_AAFC_ECORC_Fusariu... 44 0.007
gb|BJ255222.1|BJ255222 BJ255222 Y. Ogihara unpublished cDNA... 42 0.028
gb|BE499235.1|BE499235 WHE0972_G04_M08ZS Wheat pre-anthesis... 40 0.11
gb|BF482309.1|BF482309 WHE1797_B12_D23ZS Wheat pre-anthesis... 40 0.11
gb|BF482590.1|BF482590 WHE2301-2304_G20_G20ZS Wheat pre-ant... 40 0.11
gb|BJ243425.1|BJ243425 BJ243425 Y. Ogihara unpublished cDNA... 40 0.11
gb|BQ904979.1|BQ904979 Ta04_13i05_R Ta04_AAFC_ECORC_Fusariu... 40 0.11
gb|CA594449.1|CA594449 wpa1c.pk007.k12 wpa1c Triticum aesti... 40 0.11
gb|CA595523.1|CA595523 wpa1c.pk010.g10 wpa1c Triticum aesti... 40 0.11
gb|CN013186.1|CN013186 WHE3957_G05_N09ZS Wheat Fusarium gra... 40 0.11
>gb|BE500722.1|BE500722 WHE0991-0994_G03_G03ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_G03_G03, mRNA
sequence
Length = 495
Score = 83.8 bits (42), Expect = 8e-015
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 183 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggcgtcctctactg 242
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
|||||| |||||| ||||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct: 243 caagacgcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcacacc 302
Query: 302 ag 303
||
Sbjct: 303 ag 304
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 68 catgtctttcaccggcncgcngnacaagtgc 98
|||||||||||||||| ||| | ||||||||
Sbjct: 69 catgtctttcaccggcacgcaggacaagtgc 99
>gb|BQ902219.1|BQ902219 Ta02_06b04_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_06b04, mRNA
sequence
Length = 201
Score = 83.8 bits (42), Expect = 8e-015
Identities = 98/122 (80%)
Strand = Plus / Minus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 190 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggcgtcctctactg 131
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
|||||| |||||| ||||||||||||| || ||||||||||| ||||| ||||| ||
Sbjct: 130 caagacgcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcacacc 71
Query: 302 ag 303
||
Sbjct: 70 ag 69
>gb|BJ245498.1|BJ245498 BJ245498 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19o10 5', mRNA sequence
Length = 622
Score = 81.8 bits (41), Expect = 3e-014
Identities = 94/117 (80%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 180 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggtgtcctctactg 239
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| ||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 240 caagacgcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcac 296
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 68 catgtctttcaccggcncgcngnacaagtgc 98
|||||||||||||||| ||| | ||||||||
Sbjct: 66 catgtctttcaccggcacgcaggacaagtgc 96
>gb|BJ251381.1|BJ251381 BJ251381 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf19o10 3', mRNA sequence
Length = 656
Score = 81.8 bits (41), Expect = 3e-014
Identities = 94/117 (80%)
Strand = Plus / Minus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 477 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggtgtcctctactg 418
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| ||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 417 caagacgcacttcgagcagctcttcaaggagacagggagcttctcaaagaagttcac 361
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 68 catgtctttcaccggcncgcngnacaagtgc 98
|||||||||||||||| ||| | ||||||||
Sbjct: 591 catgtctttcaccggcacgcaggacaagtgc 561
>gb|BG263743.1|BG263743 WHE2348_E03_J06ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE2348_E03_J06, mRNA sequence
Length = 542
Score = 73.8 bits (37), Expect = 8e-012
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 184 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggcgtcctctactg 243
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| |||||||||||| || ||||||||||| ||||| |||||
Sbjct: 244 caagacgcacttcgagcagctcttcaaagagacagggagcttctcaaagaagttcac 300
Score = 44.1 bits (22), Expect = 0.007
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 68 catgtctttcaccggcncgcngnacaagtgc 98
|||||||||||||||| ||| | ||||||||
Sbjct: 70 catgtctttcaccggcacgcaggacaagtgc 100
>gb|BJ247645.1|BJ247645 BJ247645 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3c02 5', mRNA sequence
Length = 610
Score = 73.8 bits (37), Expect = 8e-012
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 163 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggcgtcctctactg 222
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| |||||||||||| || ||||||||||| ||||| |||||
Sbjct: 223 caagacgcacttcgagcagctcttcaaagagacagggagcttctcaaagaagttcac 279
>gb|BJ253477.1|BJ253477 BJ253477 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2c02 3', mRNA sequence
Length = 696
Score = 73.8 bits (37), Expect = 8e-012
Identities = 93/117 (79%)
Strand = Plus / Minus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 666 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggcgtcctctactg 607
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| |||||||||||| || ||||||||||| ||||| |||||
Sbjct: 606 caagacgcacttcgagcagctcttcaaagagacagggagcttctcaaagaagttcac 550
>gb|BJ253745.1|BJ253745 BJ253745 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf3c02 3', mRNA sequence
Length = 693
Score = 73.8 bits (37), Expect = 8e-012
Identities = 93/117 (79%)
Strand = Plus / Minus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 665 ccactgcaaagggatcctctcgatgtgcagctattcttccatggacggcgtcctctactg 606
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
|||||| |||||| |||||||||||| || ||||||||||| ||||| |||||
Sbjct: 605 caagacgcacttcgagcagctcttcaaagagacagggagcttctcaaagaagttcac 549
>gb|BQ901426.1|BQ901426 Ta02_19d11_R
Ta02_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta02_19d11, mRNA
sequence
Length = 200
Score = 63.9 bits (32), Expect = 8e-009
Identities = 93/122 (76%)
Strand = Plus / Minus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||||||| ||||||||| | |||| || |||||||||| || |||||
Sbjct: 190 ccactgcaaagggaycctctcgatgtgcagctattcttccatggacggcgtcctctactg 131
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
|||||| |||| | ||||||| |||| || ||||||| | | ||||| ||||| ||
Sbjct: 130 caagacgcactycgagcagctcyycaaggagacagggagctycycaaagaagttcacacc 71
Query: 302 ag 303
||
Sbjct: 70 ag 69
>gb|BE500862.1|BE500862 WHE0991-0994_L10_L10ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_L10_L10, mRNA
sequence
Length = 457
Score = 60.0 bits (30), Expect = 1e-007
Identities = 95/122 (77%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 212 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgtcctctactg 271
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| ||||||||||||| || |||| |||||| ||||| || |||||
Sbjct: 272 caagacccatttcgagcagctcttcaaggagacggggaacttctcaaagaattttacgcc 331
Query: 302 ag 303
||
Sbjct: 332 ag 333
Score = 44.1 bits (22), Expect = 0.007
Identities = 57/73 (78%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| | | | ||||||||| ||||||||| || ||||
Sbjct: 96 ccatgtctttcaccggcacacaggacaagtgcaagacgtgcgacaagaccgtccatttca 155
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 156 tcgacctcctcac 168
>gb|CD454196.1|CD454196 WHE0991-0994_L10_L10ZT CS wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE0991-0994_L10_L10, mRNA
sequence
Length = 726
Score = 54.0 bits (27), Expect = 7e-006
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 238 actgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttca 297
||||||||||||| ||| ||||||||||||| || |||| |||||| ||||| || |
Sbjct: 726 actgcaagacccatttcgagcagctcttcaaggagacggggaacttctcaaagaatttta 667
Query: 298 cgccag 303
||||||
Sbjct: 666 cgccag 661
>gb|BJ243839.1|BJ243839 BJ243839 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf13b10 5', mRNA sequence
Length = 655
Score = 52.0 bits (26), Expect = 3e-005
Identities = 94/122 (77%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 160 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgttctctactg 219
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| |||||||||||| || |||| |||||| ||||| || |||||
Sbjct: 220 caagacccatttcgaacagctcttcaaggagacggggaacttctcaaagaattttacgcc 279
Query: 302 ag 303
||
Sbjct: 280 ag 281
Score = 52.0 bits (26), Expect = 3e-005
Identities = 58/73 (79%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 45 ccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccatttca 104
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 105 tcgacctcctcac 117
>gb|BJ247418.1|BJ247418 BJ247418 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf2c02 5', mRNA sequence
Length = 198
Score = 52.0 bits (26), Expect = 3e-005
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 183 cactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactgc 242
|||||||||||| | || |||| | |||| || |||||||||| |||| ||||||
Sbjct: 50 cactgcaaagggatcctgtcnatgtgcagctattcttccatggacggcgnnctctactgc 109
Query: 243 aagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcac 298
||||| ||||||| |||| ||||||| || ||||||||||| ||||| |||||
Sbjct: 110 aagacgcacttcnagcagntcttcaaagagacagggagcttctcaaagaagttcac 165
>gb|BJ248972.1|BJ248972 BJ248972 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8n13 5', mRNA sequence
Length = 663
Score = 52.0 bits (26), Expect = 3e-005
Identities = 58/73 (79%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 66 ccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccatttca 125
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 126 tcgacctcctcac 138
Score = 44.1 bits (22), Expect = 0.007
Identities = 93/122 (76%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 181 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgttctctactg 240
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| |||||||||||| || || | |||||| ||||| || |||||
Sbjct: 241 caagacccatttcgaacagctcttcaaggagacgggcaacttctcaaagaattttacgcc 300
Query: 302 ag 303
||
Sbjct: 301 ag 302
>gb|BJ258356.1|BJ258356 BJ258356 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7c24 5', mRNA sequence
Length = 622
Score = 52.0 bits (26), Expect = 3e-005
Identities = 58/73 (79%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 121 ccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccatttca 180
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 181 tcgacctcctcac 193
Score = 50.1 bits (25), Expect = 1e-004
Identities = 82/105 (78%)
Strand = Plus / Plus
Query: 199 tctcgatgtncngctactcctccatggacgnnnnnctgtactgcaagacccacttcnngc 258
||||||||| | |||||| |||||||| | || |||||||||||||| ||| |
Sbjct: 253 tctcgatgtgcaactactcttccatggatggtgttctctactgcaagacccatttcgaac 312
Query: 259 agctcttcaagnnnaccgggagcttctccaagaacttcacgccag 303
||||||||||| || |||| |||||| ||||| || |||||||
Sbjct: 313 agctcttcaaggagacggggaacttctcaaagaattttacgccag 357
>gb|CA593420.1|CA593420 wpa1c.pk003.j13 wpa1c Triticum aestivum cDNA clone wpa1c.pk003.j13
5' end, mRNA sequence
Length = 511
Score = 52.0 bits (26), Expect = 3e-005
Identities = 58/73 (79%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 127 ccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccatttca 186
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 187 tcgacctcctcac 199
>gb|CA741431.1|CA741431 wia1c.pk002.f17 wia1c Triticum aestivum cDNA clone wia1c.pk002.f17
5' end, mRNA sequence
Length = 629
Score = 52.0 bits (26), Expect = 3e-005
Identities = 58/73 (79%)
Strand = Plus / Plus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
||||||||||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 59 ccatgtctttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccatttca 118
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 119 tcgacctcctcac 131
Score = 44.1 bits (22), Expect = 0.007
Identities = 93/122 (76%)
Strand = Plus / Plus
Query: 182 ccactgcaaagggnnnntctcgatgtncngctactcctccatggacgnnnnnctgtactg 241
||||||||| ||| ||||||||| | |||||| |||||||| | || |||||
Sbjct: 174 ccactgcaaggggaccctctcgatgtgcaactactcttccatggatggtgttctctactg 233
Query: 242 caagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttcacgcc 301
||||||||| ||| |||||||||||| || || | |||||| ||||| || |||||
Sbjct: 234 caagacccatttcgaacagctcttcaaggagacgggcaacttctcaaagaattttacgcc 293
Query: 302 ag 303
||
Sbjct: 294 ag 295
>gb|BJ263949.1|BJ263949 BJ263949 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7c24 3', mRNA sequence
Length = 655
Score = 48.1 bits (24), Expect = 4e-004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 237 tactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttc 296
|||||||||||||| ||| |||||||||||| || |||| |||||| ||||| ||
Sbjct: 652 tactgcaagacccatttcgaacagctcttcaaggagacggggaacttctcaaagaatttt 593
Query: 297 acgccag 303
|||||||
Sbjct: 592 acgccag 586
>gb|BJ285828.1|BJ285828 BJ285828 Y. Ogihara unpublished cDNA library, Wh_r Triticum
aestivum cDNA clone whr13b10 3', mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 4e-004
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 237 tactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttc 296
|||||||||||||| ||| |||||||||||| || |||| |||||| ||||| ||
Sbjct: 652 tactgcaagacccatttcgaacagctcttcaaggagacggggaacttctcaaagaatttt 593
Query: 297 acgccag 303
|||||||
Sbjct: 592 acgccag 586
>gb|BI750799.1|BI750799 Ta01_02d02_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_02d02, mRNA
sequence
Length = 434
Score = 44.1 bits (22), Expect = 0.007
Identities = 57/73 (78%)
Strand = Plus / Minus
Query: 67 ccatgtctttcaccggcncgcngnacaagtgcacnnnntgcgacaagnnnnnncacttca 126
|||||| |||||||||| ||| | ||||||||| ||||||||| || ||||
Sbjct: 337 ccatgtttttcaccggcacgcaggacaagtgcaagacgtgcgacaagaccgtccatttca 278
Query: 127 tcgacctcctcac 139
|||||||||||||
Sbjct: 277 tcgacctcctcac 265
Score = 38.2 bits (19), Expect = 0.43
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 237 tactgcaagacccacttcnngcagctcttcaag 269
|||||||||||||| ||| ||||||||||||
Sbjct: 168 tactgcaagacccatttcgaacagctcttcaag 136
>gb|BJ255222.1|BJ255222 BJ255222 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf8n13 3', mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.028
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 237 tactgcaagacccacttcnngcagctcttcaagnnnaccgggagcttctccaagaacttc 296
|||||||||||||| ||| ||||||||||||| || || | |||||| ||||| ||
Sbjct: 650 tactgcaagacccatttcgancagctcttcaagnagacgggcaacttctcaaagaatttt 591
Query: 297 acgccag 303
|||||||
Sbjct: 590 acgccag 584
>gb|BE499235.1|BE499235 WHE0972_G04_M08ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0972_G04_M08, mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 227 tcgatgtgcagctactcctccatgga 252
>gb|BF482309.1|BF482309 WHE1797_B12_D23ZS Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE1797_B12_D23, mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 226 tcgatgtgcagctactcctccatgga 251
>gb|BF482590.1|BF482590 WHE2301-2304_G20_G20ZS Wheat pre-anthesis spike cDNA library
Triticum aestivum cDNA clone WHE2301-2304_G20_G20, mRNA
sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 251 tcgatgtgcagctactcctccatgga 276
>gb|BJ243425.1|BJ243425 BJ243425 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf11b19 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 237 tcgatgtgcagctactcctccatgga 262
>gb|BQ904979.1|BQ904979 Ta04_13i05_R
Ta04_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta04_13i05, mRNA
sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 202 tcgatgtgcagctactcctccatgga 177
>gb|CA594449.1|CA594449 wpa1c.pk007.k12 wpa1c Triticum aestivum cDNA clone wpa1c.pk007.k12
5' end, mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 266 tcgatgtgcagctactcctccatgga 291
>gb|CA595523.1|CA595523 wpa1c.pk010.g10 wpa1c Triticum aestivum cDNA clone wpa1c.pk010.g10
5' end, mRNA sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 271 tcgatgtgcagctactcctccatgga 296
>gb|CN013186.1|CN013186 WHE3957_G05_N09ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3957_G05_N09,
mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.11
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 201 tcgatgtncngctactcctccatgga 226
||||||| | ||||||||||||||||
Sbjct: 244 tcgatgtgcagctactcctccatgga 269
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,001
Number of Sequences: 636343
Number of extensions: 31001
Number of successful extensions: 7943
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7886
Number of HSP's gapped (non-prelim): 51
length of query: 393
length of database: 367,240,239
effective HSP length: 19
effective length of query: 374
effective length of database: 355,149,722
effective search space: 132825996028
effective search space used: 132825996028
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)