BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ23f06.xg.2.1
(683 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ258453.1|BJ258453 BJ258453 Y. Ogihara unpublished cDNA... 412 e-113
gb|CK193343.1|CK193343 FGAS001757 Triticum aestivum FGAS: L... 226 2e-057
gb|CV761162.1|CV761162 FGAS055550 Triticum aestivum FGAS: L... 208 4e-052
gb|CA618329.1|CA618329 wl1n.pk0032.b8 wl1n Triticum aestivu... 141 7e-032
gb|CA649516.1|CA649516 wre1n.pk0140.f1 wre1n Triticum aesti... 119 3e-025
gb|BE516162.1|BE516162 WHE612_G07_N14ZA Wheat ABA-treated e... 105 4e-021
gb|CD935094.1|CD935094 OV.002P18F010109 OV Triticum aestivu... 103 2e-020
gb|BE406539.1|BE406539 WHE0418_a08_a16zB Wheat etiolated se... 62 5e-008
gb|CV766772.1|CV766772 FGAS061159 Triticum aestivum FGAS: L... 62 5e-008
gb|CV776224.1|CV776224 FGAS070628 Triticum aestivum FGAS: L... 60 2e-007
gb|CV767735.1|CV767735 FGAS062126 Triticum aestivum FGAS: L... 54 1e-005
gb|AY462115.1| Triticum aestivum annexin mRNA, complete cds 54 1e-005
gb|DR735537.1|DR735537 FGAS081207 Triticum aestivum FGAS: L... 50 2e-004
gb|CV763663.1|CV763663 FGAS058046 Triticum aestivum FGAS: L... 48 8e-004
gb|BE518038.1|BE518038 WHE0806_E09_I18ZS Wheat vernalized c... 46 0.003
gb|BF474383.1|BF474383 WHE0843_D07_H13ZS Wheat vernalized c... 46 0.003
gb|BE415152.1|BE415152 MWL023.B06F991217 ITEC MWL Wheat Roo... 44 0.012
>gb|BJ258453.1|BJ258453 BJ258453 Y. Ogihara unpublished cDNA library, Wh_h Triticum
aestivum cDNA clone whh7o07 5', mRNA sequence
Length = 550
Score = 412 bits (208), Expect = e-113
Identities = 414/484 (85%)
Strand = Plus / Plus
Query: 38 cggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcg 97
|||| ||||||||||||||| ||||||||||| | ||||| || |||||||||||||
Sbjct: 67 cggcaatggcgagcctcaccttgccgccggcgccccctaacccccgccaggacgccatcg 126
Query: 98 acctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatactta 157
||||||| |||||||||||||||||||||||||| | ||||||||| ||| ||||||
Sbjct: 127 acctccacaaggccttcaaagggtttggctgtgatactacaacagtttcaaatatacttg 186
Query: 158 ctcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatg 217
|||| || || ||| |||| |||||| ||||||||||||||||| |||||||| ||
Sbjct: 187 ctcaccgtgactcaatgcaacgtggatacattcaacaggaatacaaaactatgtattctg 246
Query: 218 aggaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgc 277
||||||| || | ||| || || |||||||||| |||||||||||||||||| ||| ||
Sbjct: 247 aggaactttcacgtcgtatatcgtctgaactcagtggaaaccacaagaaagcactgtcgc 306
Query: 278 tgtggattcttgatcctgctggacgtgatncnactgttttgagagaagctctaagtggtg 337
| ||||||||||||||||||||||||||| | |||||| ||| |||||||||||||| ||
Sbjct: 307 tctggattcttgatcctgctggacgtgatgcgactgttctgaaagaagctctaagtgctg 366
Query: 338 acactatggatctgagagcagccactgatattatatgttccaggacaccatcacagttgn 397
| | | | ||||||| |||||| |||||||| || ||||||||||||||||||||| ||
Sbjct: 367 aaagtcttgatctgaaagcagctactgatataatttgttccaggacaccatcacagctgc 426
Query: 398 aaataatgaaacagacttattatgctagatttggtacttatcttgagcatgacattggtc 457
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||
Sbjct: 427 aaataatgaaacagacatattatgcaaagtttggtacttatcttgagcatgacattagtc 486
Query: 458 accacacatctggcgatcaccagnagcttttacttgcctatgtggggattccacgctacg 517
| || ||||| |||||||| ||| || | ||||| |||||||| || |||||||||||||
Sbjct: 487 agcaaacatccggcgatcatcagaagatcttactagcctatgttggcattccacgctacg 546
Query: 518 aagg 521
||||
Sbjct: 547 aagg 550
>gb|CK193343.1|CK193343 FGAS001757 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 789
Score = 226 bits (114), Expect = 2e-057
Identities = 265/323 (82%)
Strand = Plus / Plus
Query: 361 actgatattatatgttccaggacaccatcacagttgnaaataatgaaacagacttattat 420
|||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct: 114 actgatataatatgttccaggacaccatcacagctgcaaataatgaaacagacatattat 173
Query: 421 gctagatttggtacttatcttgagcatgacattggtcaccacacatctggcgatcaccag 480
|| | ||||||||||||||||||||||||||| |||| || |||| |||||||| |||
Sbjct: 174 gcaaagtttggtacttatcttgagcatgacattagtcagcaagcatccggcgatcatcag 233
Query: 481 nagcttttacttgcctatgtggggattccacgctacgaaggtcctgaggttgatcctacc 540
|| | ||||| |||||||| || ||||||||||||||||| || ||||||||||| ||
Sbjct: 234 aagatcttactagcctatgttggcattccacgctacgaaggcccggaggttgatcccact 293
Query: 541 attgngacacatgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggat 600
|| | |||||||||||| ||||| | ||||||||||||||| ||| ||| || || |||
Sbjct: 294 atagtgacacatgatgcgaaggacctctacaaagctggtgagaaaaagctgggcacagat 353
Query: 601 gagnnnnnntnnatnngcgnnttcactgnacgcngctgggcacacntggcatctgnntcg 660
||| | || || ||||||| |||| ||||||||||| ||||| ||| |
Sbjct: 354 gagaaaaccttcatccgcatcttcactgaacgcagctgggcacacatggcagctgttgct 413
Query: 661 tctgcnnaccatcatatgtatga 683
||||| ||||||| ||||||||
Sbjct: 414 tctgcttaccatcacatgtatga 436
>gb|CV761162.1|CV761162 FGAS055550 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 840
Score = 208 bits (105), Expect = 4e-052
Identities = 200/233 (85%)
Strand = Plus / Plus
Query: 354 agcagccactgatattatatgttccaggacaccatcacagttgnaaataatgaaacagac 413
|||||| |||||||| || ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 127 agcagctactgatataatttgttccaggacaccatcacagctgcaaataatgaaacagac 186
Query: 414 ttattatgctagatttggtacttatcttgagcatgacattggtcaccacacatctggcga 473
|||||||| | ||||||||||||||||||||||||||| |||| || |||| |||||
Sbjct: 187 atattatgcaaagtttggtacttatcttgagcatgacattagtcagcaagcatccggcga 246
Query: 474 tcaccagnagcttttacttgcctatgtggggattccacgctacgaaggtcctgaggttga 533
||| ||| || | ||||| |||||||| || ||||||||||||||||| || ||||||||
Sbjct: 247 tcatcagaagatcttactagcctatgttggcattccacgctacgaaggcccggaggttga 306
Query: 534 tcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgagnaaa 586
||| || || | ||||| |||||| ||||| | ||||||||||||||| |||
Sbjct: 307 tcccactatagtgacacttgatgcgaaggacctctacaaagctggtgagaaaa 359
>gb|CA618329.1|CA618329 wl1n.pk0032.b8 wl1n Triticum aestivum cDNA clone wl1n.pk0032.b8 5'
end, mRNA sequence
Length = 554
Score = 141 bits (71), Expect = 7e-032
Identities = 158/187 (84%)
Strand = Plus / Plus
Query: 38 cggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcg 97
|||| ||||||||||||||| ||||||||||| | ||||| || |||||||||||||
Sbjct: 104 cggcaatggcgagcctcaccttgccgccggcgccccctaacccccgccaggacgccatcg 163
Query: 98 acctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatactta 157
||||||| |||||||||||||||||||||||||| | ||||||||| ||| ||||||
Sbjct: 164 acctccacaaggccttcaaagggtttggctgtgatactacaacagtttcaaatatacttg 223
Query: 158 ctcatcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatg 217
|||| || || ||| |||| |||||| ||||||||||||||||| |||||||| ||
Sbjct: 224 ctcaccgtgactcaatgcaacgtggatacattcaacaggaatacaaaactatgtattctg 283
Query: 218 aggaact 224
|||||||
Sbjct: 284 aggaact 290
>gb|CA649516.1|CA649516 wre1n.pk0140.f1 wre1n Triticum aestivum cDNA clone wre1n.pk0140.f1
5' end, mRNA sequence
Length = 642
Score = 119 bits (60), Expect = 3e-025
Identities = 93/104 (89%)
Strand = Plus / Plus
Query: 38 cggcgatggcgagcctcaccctgccgccggcgatggcgaacccacggcaggacgccatcg 97
|||| ||||||||||||||| ||||||||||| ||||||| || |||||||||||||
Sbjct: 110 cggcaatggcgagcctcaccttgccgccggcgcccccgaacccgcgccaggacgccatcg 169
Query: 98 acctccaaaaggccttcaaagggtttggctgtgacagtacaaca 141
||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 170 acctccacaaggccttcaaagggttgggctgtgatagtacaaca 213
>gb|BE516162.1|BE516162 WHE612_G07_N14ZA Wheat ABA-treated embryo cDNA library Triticum
aestivum cDNA clone WHE612_G07_N14, mRNA sequence
Length = 642
Score = 105 bits (53), Expect = 4e-021
Identities = 169/215 (78%)
Strand = Plus / Plus
Query: 469 ggcgatcaccagnagcttttacttgcctatgtggggattccacgctacgaaggtcctgag 528
|||||||| ||| || | ||||| |||||||| || ||||||||||||||||| || |||
Sbjct: 18 ggcgatcatcagaagatcttactagcctatgttggcattccacgctacgaaggcccggag 77
Query: 529 gttgatcctaccattgngacacatgatgcaaaggatttgtacaaagctggtgagnaaagg 588
|||||||| || || | |||||||||||| ||||| | ||||||||||||||| ||| |
Sbjct: 78 gttgatcccactatagtgacacatgatgcgaaggacctctacaaagctggtgagaaaaag 137
Query: 589 ctcggtacggatgagnnnnnntnnatnngcgnnttcactgnacgcngctgggcacacntg 648
|| || || |||||| | || || ||||||| |||| ||||||||||| ||
Sbjct: 138 ctgggcacagatgagaaaaccttcatccgcatcttcactgaacgcagctgggcacacatg 197
Query: 649 gcatctgnntcgtctgcnnaccatcatatgtatga 683
||| ||| | ||||| ||||||| ||||||||
Sbjct: 198 gcagctgttgcttctgcttaccatcacatgtatga 232
>gb|CD935094.1|CD935094 OV.002P18F010109 OV Triticum aestivum cDNA clone OV002P18, mRNA
sequence
Length = 696
Score = 103 bits (52), Expect = 2e-020
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 447 tgacattggtcaccacacatctggcgatcaccagnagcttttacttgcctatgtggggat 506
||||||| |||| || |||| |||||||| ||| || | ||||| |||||||| || ||
Sbjct: 214 tgacattagtcagcaagcatccggcgatcatcagaagatcttactagcctatgttggcat 155
Query: 507 tccacgctacgaaggtcctgaggttgatcctaccattgngacacatgatgcaaaggattt 566
||||||||||||||| || ||||||||||| || || | |||||||||||| ||||| |
Sbjct: 154 tccacgctacgaaggcccggaggttgatcccactatagtgacacatgatgcgaaggacct 95
Query: 567 gtacaaagctggtgagnaaaggctcggtacggatgag 603
||||||||||||||| ||| ||| || || ||||||
Sbjct: 94 ctacaaagctggtgagaaaaagctgggcacagatgag 58
>gb|BE406539.1|BE406539 WHE0418_a08_a16zB Wheat etiolated seedling root cDNA library
Triticum aestivum cDNA clone WHE0418_a08_a16, mRNA
sequence
Length = 309
Score = 61.9 bits (31), Expect = 5e-008
Identities = 142/179 (79%)
Strand = Plus / Plus
Query: 100 ctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttact 159
||||| ||||||||||||||||| ||||| ||||| || || |||| ||||||||| ||
Sbjct: 90 ctccacaaggccttcaaagggttcggctgcgacagcacgacggtgactaacatacttgct 149
Query: 160 catcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgag 219
|| ||||| || | |||||| | ||||| | || || |||| || || || ||| ||
Sbjct: 150 caccgcgactcggcgcagcgcgcgctcatcctgcacgagtacaaagccatataccatcag 209
Query: 220 gaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgct 278
|| |||| ||||||| | || ||||||| | ||||||||||||||| |||||| ||||
Sbjct: 210 gatctctaccatcgcctagcaactgaactgagtggaaaccacaagaatgctatgctgct 268
>gb|CV766772.1|CV766772 FGAS061159 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 841
Score = 61.9 bits (31), Expect = 5e-008
Identities = 142/179 (79%)
Strand = Plus / Plus
Query: 100 ctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttact 159
||||| ||||||||||||||||| ||||| ||||| || || |||| ||||||||| ||
Sbjct: 206 ctccacaaggccttcaaagggttcggctgcgacagcacgacggtgactaacatacttgct 265
Query: 160 catcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgag 219
|| ||||| || | |||||| | ||||| | || || |||| || || || ||| ||
Sbjct: 266 caccgcgactcggcgcagcgcgcgctcatcctgcacgagtacaaagccatataccatcag 325
Query: 220 gaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgct 278
|| |||| ||||||| | || ||||||| | ||||||||||||||| |||||| ||||
Sbjct: 326 gatctctaccatcgcctagcaactgaactgagtggaaaccacaagaatgctatgctgct 384
>gb|CV776224.1|CV776224 FGAS070628 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 820
Score = 60.0 bits (30), Expect = 2e-007
Identities = 138/174 (79%)
Strand = Plus / Plus
Query: 100 ctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttact 159
||||| ||||||||||||||||| ||||| ||||| || || |||| ||||||||| ||
Sbjct: 189 ctccacaaggccttcaaagggttcggctgcgacagcacgacggtgactaacatacttgct 248
Query: 160 catcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgag 219
|| ||||| || | |||||| | ||||| | || || |||| || || || ||| ||
Sbjct: 249 caccgcgactcggcgcagcgcgcgctcatcctgcacgagtacaaagccatataccatcag 308
Query: 220 gaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatg 273
|| |||| ||||||| | || ||||||| | ||||||||||||||| ||||||
Sbjct: 309 gatctctaccatcgcctagcaactgaactgagtggaaaccacaagaatgctatg 362
>gb|CV767735.1|CV767735 FGAS062126 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 885
Score = 54.0 bits (27), Expect = 1e-005
Identities = 162/207 (78%)
Strand = Plus / Plus
Query: 100 ctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttact 159
||||| |||||||||||||| || ||||| ||||| || || |||| ||||||||| ||
Sbjct: 192 ctccacaaggccttcaaaggtttcggctgcgacagcacgacggtgaccaacatacttgct 251
Query: 160 catcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgag 219
|| ||||| || | |||||| | ||||| | || || |||| || ||||| ||| ||
Sbjct: 252 caccgcgactcggcgcagcgcgcgctcatcctgcacgagtacaaagccatgtaccatcag 311
Query: 220 gaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctg 279
|| |||| ||||||| | || | || || | ||||||||||||||| |||||| ||||
Sbjct: 312 gatctctaccatcgcctagcaaccgagctgagtggaaaccacaagaatgctatgctgctt 371
Query: 280 tggattcttgatcctgctggacgtgat 306
||| | || || |||||||| ||||||
Sbjct: 372 tgggtcctcgaccctgctgggcgtgat 398
>gb|AY462115.1| Triticum aestivum annexin mRNA, complete cds
Length = 951
Score = 54.0 bits (27), Expect = 1e-005
Identities = 162/207 (78%)
Strand = Plus / Plus
Query: 100 ctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttact 159
||||| |||||||||||||| || ||||| ||||| || || |||| ||||||||| ||
Sbjct: 58 ctccacaaggccttcaaaggtttcggctgcgacagcacgacggtgaccaacatacttgct 117
Query: 160 catcgcgattcagtgcagcgtggactcattcaacaggaatacagggctatgtatcatgag 219
|| ||||| || | |||||| | ||||| | || || |||| || ||||| ||| ||
Sbjct: 118 caccgcgactcggcgcagcgcgcgctcatcctgcacgagtacaaagccatgtaccatcag 177
Query: 220 gaactctcccatcgcatttcatctgaactcaatggaaaccacaagaaagctatgttgctg 279
|| |||| ||||||| | || | || || | ||||||||||||||| |||||| ||||
Sbjct: 178 gatctctaccatcgcctagcaaccgagctgagtggaaaccacaagaatgctatgctgctt 237
Query: 280 tggattcttgatcctgctggacgtgat 306
||| | || || |||||||| ||||||
Sbjct: 238 tgggtcctcgaccctgctgggcgtgat 264
>gb|DR735537.1|DR735537 FGAS081207 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 1121
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 88 gacgccatcgacctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgata 147
|||||||||| |||||| | ||||||||||||||| || || ||||| || || |||||
Sbjct: 128 gacgccatcgccctccacagggccttcaaagggttcgggtgcgacagcacgacggtgatc 187
Query: 148 aacat 152
|||||
Sbjct: 188 aacat 192
>gb|CV763663.1|CV763663 FGAS058046 Triticum aestivum FGAS: Library 2 Gate 3 Triticum
aestivum cDNA, mRNA sequence
Length = 834
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 100 ctccaaaaggccttcaaagggtttggctgtgacagtacaacagtgataaacatacttact 159
||||| |||||||||||||| || ||||| ||||| || || |||| ||||||||| ||
Sbjct: 179 ctccacaaggccttcaaaggtttcggctgcgacagcacgacggtgaccaacatacttgct 238
Query: 160 catcgcga 167
|| |||||
Sbjct: 239 caccgcga 246
>gb|BE518038.1|BE518038 WHE0806_E09_I18ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0806_E09_I18, mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.003
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 252 tggaaaccacaagaaagctatgttgctgtggattcttgatcctgctggacgtgat 306
||||||||||||||| |||||| |||| ||| | || || |||||||| ||||||
Sbjct: 231 tggaaaccacaagaatgctatgctgctttgggtcctcgaccctgctgggcgtgat 285
>gb|BF474383.1|BF474383 WHE0843_D07_H13ZS Wheat vernalized crown cDNA library Triticum
aestivum cDNA clone WHE0843_D07_H13, mRNA sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.003
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 546 gacacatgatgcaaaggatttgtacaaagctggtgagnaaaggctcggtacggatgag 603
|||||||||||| ||||| | ||||||||||||||| ||| ||| || || ||||||
Sbjct: 3 gacacatgatgcgaaggacctctacaaagctggtgagaaaaagctgggcacagatgag 60
>gb|BE415152.1|BE415152 MWL023.B06F991217 ITEC MWL Wheat Root Library Triticum aestivum
cDNA clone MWL023.B06, mRNA sequence
Length = 305
Score = 44.1 bits (22), Expect = 0.012
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 87 ggacgccatcgacctccaaaaggccttcaaagggtttggctg 128
||||||| ||| ||||| ||||||||||||||||| |||||
Sbjct: 85 ggacgccgtcgctctccacaaggccttcaaagggttcggctg 126
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,165
Number of Sequences: 636343
Number of extensions: 134165
Number of successful extensions: 31367
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31323
Number of HSP's gapped (non-prelim): 41
length of query: 683
length of database: 367,240,239
effective HSP length: 19
effective length of query: 664
effective length of database: 355,149,722
effective search space: 235819415408
effective search space used: 235819415408
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)